Wall clock time and date at job start Tue Mar 31 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 109.50839 * 300.28341 * 9 7 2 11 11 C 1.53124 * 109.50158 * 60.36214 * 9 7 2 12 12 C 1.53118 * 109.15722 * 177.55520 * 11 9 7 13 13 C 1.53038 * 109.31387 * 302.40103 * 12 11 9 14 14 N 1.46844 * 109.52248 * 59.15718 * 13 12 11 15 15 C 1.38391 * 111.00014 * 174.16259 * 14 13 12 16 16 N 1.32426 * 120.47795 * 123.93571 * 15 14 13 17 17 C 1.32045 * 121.40282 * 179.75608 * 16 15 14 18 18 N 1.31438 * 121.93965 * 0.53497 * 17 16 15 19 19 C 1.33416 * 120.91343 * 359.73652 * 18 17 16 20 20 S 1.76036 * 132.09385 * 179.97438 * 19 18 17 21 21 C 1.75876 * 90.37152 * 180.02562 * 20 19 18 22 22 N 1.28105 * 110.41645 * 0.02562 * 21 20 19 23 23 C 1.34367 * 118.01726 * 359.97438 * 22 21 20 24 24 C 1.46851 * 111.20164 * 298.26550 * 14 13 12 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.51694 * 297.49548 * 11 9 7 27 27 H 1.08995 * 109.52497 * 57.68515 * 11 9 7 28 28 H 1.09010 * 109.50345 * 182.43977 * 12 11 9 29 29 H 1.09003 * 109.47758 * 62.34595 * 12 11 9 30 30 H 1.09000 * 109.45950 * 299.14852 * 13 12 11 31 31 H 1.08994 * 109.46554 * 179.18007 * 13 12 11 32 32 H 1.07994 * 119.02937 * 180.26838 * 17 16 15 33 33 H 1.07994 * 124.79191 * 180.02562 * 21 20 19 34 34 H 1.09002 * 109.45673 * 301.72089 * 24 14 13 35 35 H 1.08997 * 109.45484 * 181.75389 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6243 -2.5534 0.8954 11 6 0.3720 -2.5875 -1.2452 12 6 -0.3428 -3.9414 -1.2623 13 6 0.6972 -5.0634 -1.2224 14 7 1.5114 -4.9348 -0.0071 15 6 2.3756 -6.0074 0.1267 16 7 3.6798 -5.8090 0.2415 17 6 4.5203 -6.8186 0.3748 18 7 4.1103 -8.0673 0.3902 19 6 2.8148 -8.3648 0.2756 20 16 1.9536 -9.9000 0.2587 21 6 0.4239 -9.0529 0.0695 22 7 0.6159 -7.7868 0.0316 23 6 1.8775 -7.3363 0.1365 24 6 2.2450 -3.6628 0.0085 25 1 -0.4850 0.8400 0.0004 26 1 -0.3660 -1.7854 -1.2290 27 1 0.9941 -2.4933 -2.1352 28 1 -0.9368 -4.0280 -2.1722 29 1 -0.9952 -4.0190 -0.3925 30 1 1.3405 -4.9936 -2.0995 31 1 0.1906 -6.0284 -1.2197 32 1 5.5762 -6.6125 0.4698 33 1 -0.5410 -9.5323 -0.0044 34 1 2.8811 -3.5996 -0.8744 35 1 2.8624 -3.6107 0.9053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148820424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:13 Heat of formation + Delta-G solvation = 90.200502 kcal Electronic energy + Delta-G solvation = -20704.712742 eV Core-core repulsion = 17636.566264 eV Total energy + Delta-G solvation = -3068.146478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -41.51691 -38.57858 -37.99425 -34.54122 -32.86457 -31.54227 -30.23560 -29.66321 -26.00523 -24.91829 -24.84064 -22.70877 -22.15167 -21.51059 -18.95164 -18.78485 -17.72619 -17.33667 -16.28462 -15.69725 -15.52810 -14.96983 -14.51506 -14.29218 -14.08830 -13.79872 -13.20884 -13.04268 -12.68881 -12.57549 -12.25621 -11.94985 -11.45333 -11.25604 -10.96711 -10.82952 -10.73487 -10.27643 -9.98722 -9.90016 -9.69708 -9.48844 -9.27864 -9.10177 -9.05596 -8.76576 -8.35911 -8.01464 -6.02589 -4.08854 0.10950 0.79931 0.90207 1.43015 2.18586 3.29478 3.36305 3.38752 3.44066 3.61947 3.89139 4.06674 4.38342 4.44541 4.71148 4.83379 5.27843 5.46838 5.50960 5.54264 5.82998 5.92564 6.11457 6.29599 6.34571 6.52832 6.57780 6.62299 6.80647 6.99039 7.15641 7.22861 7.37061 7.51219 7.70255 7.95081 8.02712 8.10135 8.38604 8.94342 9.55944 11.03819 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031140 B = 0.004210 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.960897 B = 6649.283208 C = 7381.502670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.051 3.949 10 H 0.035 0.965 11 C -0.115 4.115 12 C -0.118 4.118 13 C 0.066 3.934 14 N -0.454 5.454 15 C 0.444 3.556 16 N -0.555 5.555 17 C 0.350 3.650 18 N -0.523 5.523 19 C 0.086 3.914 20 S 0.093 5.907 21 C 0.077 3.923 22 N -0.419 5.419 23 C -0.051 4.051 24 C 0.072 3.928 25 H 0.260 0.740 26 H 0.096 0.904 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.207 0.793 33 H 0.215 0.785 34 H 0.046 0.954 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 -17.849 -1.739 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.032 3.968 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.059 4.059 14 N -0.167 5.167 15 C 0.193 3.807 16 N -0.279 5.279 17 C 0.057 3.943 18 N -0.243 5.243 19 C -0.169 4.169 20 S 0.341 5.659 21 C -0.230 4.230 22 N -0.130 5.130 23 C -0.180 4.180 24 C -0.052 4.052 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.224 0.776 33 H 0.231 0.769 34 H 0.065 0.935 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.706 -18.170 -1.274 18.294 hybrid contribution 0.364 1.534 -0.425 1.633 sum 2.070 -16.635 -1.700 16.850 Atomic orbital electron populations 1.69878 1.05876 1.26493 1.50462 1.24921 0.94842 0.99033 0.94949 0.86584 0.79908 0.83380 0.78076 1.20717 1.21243 1.19864 1.21064 0.92983 0.90200 1.51021 0.92477 1.18777 0.92547 0.90389 0.95054 0.94660 1.21746 1.00262 0.94684 0.98629 1.21738 0.96864 0.95729 1.01216 1.22395 0.95261 1.01857 0.86346 1.58503 1.20336 1.02575 1.35295 1.20178 0.87651 0.87858 0.85025 1.68448 1.01417 1.36472 1.21548 1.24934 1.00270 0.81713 0.87385 1.67906 1.13042 1.23227 1.20147 1.24646 0.94929 0.97129 1.00171 1.85011 1.01885 1.05013 1.74030 1.29127 1.01314 0.90430 1.02147 1.65967 1.20170 1.13942 1.12878 1.20143 0.88577 0.95590 1.13681 1.22518 0.96251 0.84834 1.01644 0.92960 0.88550 0.94673 0.92343 0.91512 0.94116 0.89204 0.77637 0.76905 0.93536 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 11.36 55.43 0.63 -24.18 16 2 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.82 8.56 -34.44 -0.29 -14.12 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.05 1.26 2.26 -91.69 -0.21 1.05 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.12 -2.62 5.03 -26.61 -0.13 -2.76 16 12 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 13 C 0.07 1.18 5.24 -3.83 -0.02 1.16 16 14 N -0.45 -8.85 4.68 -172.50 -0.81 -9.66 16 15 C 0.44 8.05 6.46 -154.52 -1.00 7.05 16 16 N -0.56 -9.54 8.78 -13.39 -0.12 -9.65 16 17 C 0.35 4.97 12.28 -92.24 -1.13 3.84 16 18 N -0.52 -7.80 10.46 -13.30 -0.14 -7.94 16 19 C 0.09 1.27 7.75 -16.26 -0.13 1.15 16 20 S 0.09 0.98 23.39 -107.50 -2.51 -1.53 16 21 C 0.08 0.77 12.41 51.21 0.64 1.41 16 22 N -0.42 -6.02 8.70 -11.43 -0.10 -6.12 16 23 C -0.05 -0.83 6.43 -84.75 -0.55 -1.37 16 24 C 0.07 1.55 3.89 -3.83 -0.01 1.54 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.10 2.45 6.17 -51.93 -0.32 2.13 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.49 5.86 -51.93 -0.30 1.19 16 32 H 0.21 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.08 1.71 7.73 -51.93 -0.40 1.30 16 LS Contribution 300.70 15.07 4.53 4.53 Total: -1.00 -30.35 300.70 -10.58 -40.93 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.95 Total: -0.54 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -3.09 Total: -1.79 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.53 Total: -57.55 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.35 -10.58 -40.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148820424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.131 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds