Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 109.50839 * 300.28341 * 9 7 2 11 11 C 1.53124 * 109.50158 * 60.36214 * 9 7 2 12 12 C 1.53118 * 109.15722 * 177.55520 * 11 9 7 13 13 C 1.53038 * 109.31387 * 302.40103 * 12 11 9 14 14 N 1.46844 * 109.52248 * 59.15718 * 13 12 11 15 15 C 1.38391 * 111.00014 * 174.16259 * 14 13 12 16 16 N 1.32426 * 120.47795 * 123.93571 * 15 14 13 17 17 C 1.32045 * 121.40282 * 179.75608 * 16 15 14 18 18 N 1.31438 * 121.93965 * 0.53497 * 17 16 15 19 19 C 1.33416 * 120.91343 * 359.73652 * 18 17 16 20 20 S 1.76036 * 132.09385 * 179.97438 * 19 18 17 21 21 C 1.75876 * 90.37152 * 180.02562 * 20 19 18 22 22 N 1.28105 * 110.41645 * 0.02562 * 21 20 19 23 23 C 1.34367 * 118.01726 * 359.97438 * 22 21 20 24 24 C 1.46851 * 111.20164 * 298.26550 * 14 13 12 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.51694 * 297.49548 * 11 9 7 27 27 H 1.08995 * 109.52497 * 57.68515 * 11 9 7 28 28 H 1.09010 * 109.50345 * 182.43977 * 12 11 9 29 29 H 1.09003 * 109.47758 * 62.34595 * 12 11 9 30 30 H 1.09000 * 109.45950 * 299.14852 * 13 12 11 31 31 H 1.08994 * 109.46554 * 179.18007 * 13 12 11 32 32 H 1.07994 * 119.02937 * 180.26838 * 17 16 15 33 33 H 1.07994 * 124.79191 * 180.02562 * 21 20 19 34 34 H 1.09002 * 109.45673 * 301.72089 * 24 14 13 35 35 H 1.08997 * 109.45484 * 181.75389 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6243 -2.5534 0.8954 11 6 0.3720 -2.5875 -1.2452 12 6 -0.3428 -3.9414 -1.2623 13 6 0.6972 -5.0634 -1.2224 14 7 1.5114 -4.9348 -0.0071 15 6 2.3756 -6.0074 0.1267 16 7 3.6798 -5.8090 0.2415 17 6 4.5203 -6.8186 0.3748 18 7 4.1103 -8.0673 0.3902 19 6 2.8148 -8.3648 0.2756 20 16 1.9536 -9.9000 0.2587 21 6 0.4239 -9.0529 0.0695 22 7 0.6159 -7.7868 0.0316 23 6 1.8775 -7.3363 0.1365 24 6 2.2450 -3.6628 0.0085 25 1 -0.4850 0.8400 0.0004 26 1 -0.3660 -1.7854 -1.2290 27 1 0.9941 -2.4933 -2.1352 28 1 -0.9368 -4.0280 -2.1722 29 1 -0.9952 -4.0190 -0.3925 30 1 1.3405 -4.9936 -2.0995 31 1 0.1906 -6.0284 -1.2197 32 1 5.5762 -6.6125 0.4698 33 1 -0.5410 -9.5323 -0.0044 34 1 2.8811 -3.5996 -0.8744 35 1 2.8624 -3.6107 0.9053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148820424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = 71.407030 kcal Electronic energy + Delta-G solvation = -20705.527688 eV Core-core repulsion = 17636.566264 eV Total energy + Delta-G solvation = -3068.961424 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.67937 -40.04173 -39.07133 -36.18296 -34.47422 -33.00231 -31.92714 -30.96925 -27.40058 -26.50896 -26.24085 -24.00477 -23.48936 -23.01127 -20.65784 -19.92998 -19.10939 -18.42248 -18.08831 -16.98995 -16.82243 -16.33723 -16.03360 -15.59141 -15.55430 -14.94573 -14.85638 -14.45456 -14.28195 -14.17888 -13.57126 -13.39314 -12.87200 -12.79070 -12.61938 -12.54009 -12.41313 -11.95246 -11.84475 -11.48185 -11.13441 -10.91504 -10.87529 -10.62472 -10.40812 -10.23230 -10.00465 -9.31061 -8.10041 -6.23894 -0.90919 -0.31205 -0.14391 0.51428 1.21436 1.42291 1.43213 1.53478 2.16311 2.44399 2.50309 2.83938 2.99289 3.17775 3.29044 3.53217 3.87712 4.02854 4.05779 4.27138 4.45174 4.52914 4.69578 4.73471 4.79610 4.96013 5.00155 5.05685 5.16136 5.36100 5.50958 5.61625 5.74440 5.91729 5.96763 6.10900 6.35096 6.39887 6.85038 6.90696 7.44034 8.95193 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031140 B = 0.004210 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.960897 B = 6649.283208 C = 7381.502670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.052 0.948 9 C 0.051 3.949 10 H -0.002 1.002 11 C -0.107 4.107 12 C -0.107 4.107 13 C 0.073 3.927 14 N -0.469 5.469 15 C 0.417 3.583 16 N -0.577 5.577 17 C 0.341 3.659 18 N -0.522 5.522 19 C 0.053 3.947 20 S 0.156 5.844 21 C 0.107 3.893 22 N -0.461 5.461 23 C -0.056 4.056 24 C 0.096 3.904 25 H 0.262 0.738 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.108 0.892 32 H 0.242 0.758 33 H 0.265 0.735 34 H 0.038 0.962 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -20.320 -2.209 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.032 3.968 10 H 0.016 0.984 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.051 4.051 14 N -0.183 5.183 15 C 0.167 3.833 16 N -0.300 5.300 17 C 0.049 3.951 18 N -0.243 5.243 19 C -0.202 4.202 20 S 0.405 5.595 21 C -0.199 4.199 22 N -0.173 5.173 23 C -0.185 4.185 24 C -0.030 4.030 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.258 0.742 33 H 0.281 0.719 34 H 0.057 0.943 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.663 -20.689 -1.741 20.829 hybrid contribution 0.350 2.053 -0.255 2.099 sum 2.013 -18.636 -1.995 18.850 Atomic orbital electron populations 1.70011 1.07094 1.27235 1.50903 1.25671 0.95666 1.02206 0.94556 0.85602 0.78694 0.79336 0.78296 1.19965 1.20850 1.19471 1.21400 0.93027 0.91724 1.51286 0.92953 1.18669 0.92801 0.91067 0.94239 0.98371 1.21530 0.99326 0.96284 0.97349 1.21617 0.96927 0.93730 1.02208 1.22349 0.94747 1.01993 0.86013 1.58519 1.21034 1.01964 1.36747 1.20230 0.88053 0.88327 0.86698 1.68400 1.01688 1.38068 1.21885 1.25605 1.01297 0.81200 0.86974 1.68013 1.13299 1.23350 1.19593 1.25283 0.94880 0.99399 1.00592 1.84874 1.00431 1.01760 1.72467 1.30127 1.03160 0.89311 0.97347 1.66009 1.19288 1.15934 1.16036 1.20146 0.89882 0.95020 1.13451 1.22001 0.95084 0.85464 1.00448 0.92909 0.91440 0.95172 0.89475 0.92434 0.94241 0.87372 0.74221 0.71933 0.94343 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.55 11.36 21.45 0.24 -52.30 16 2 C 0.02 1.01 5.31 84.65 0.45 1.46 16 3 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.54 -29.93 8.56 25.60 0.22 -29.71 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.05 2.64 2.26 -11.49 -0.03 2.61 16 10 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 11 C -0.11 -5.04 5.03 30.68 0.15 -4.89 16 12 C -0.11 -4.04 6.09 30.65 0.19 -3.86 16 13 C 0.07 2.61 5.24 86.33 0.45 3.06 16 14 N -0.47 -18.69 4.68 -699.66 -3.27 -21.97 16 15 C 0.42 15.24 6.46 133.96 0.87 16.11 16 16 N -0.58 -20.06 8.78 -196.27 -1.72 -21.78 16 17 C 0.34 9.49 12.28 180.92 2.22 11.72 16 18 N -0.52 -14.88 10.46 -196.00 -2.05 -16.93 16 19 C 0.05 1.48 7.75 84.84 0.66 2.13 16 20 S 0.16 2.72 23.39 -56.49 -1.32 1.40 16 21 C 0.11 1.69 12.41 130.79 1.62 3.31 16 22 N -0.46 -12.15 8.70 -190.03 -1.65 -13.80 16 23 C -0.06 -1.77 6.43 40.06 0.26 -1.52 16 24 C 0.10 4.32 3.89 86.33 0.34 4.65 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.07 3.58 6.17 -2.38 -0.01 3.56 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 3.46 5.86 -2.39 -0.01 3.44 16 32 H 0.24 4.48 8.06 -2.91 -0.02 4.45 16 33 H 0.27 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.04 1.75 8.12 -2.39 -0.02 1.73 16 35 H 0.06 2.92 7.73 -2.39 -0.02 2.90 16 Total: -1.00 -68.91 300.70 0.76 -68.15 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.12 Total: 6.41 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 7.40 Total: 5.08 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -8.46 Total: -126.79 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.32 Total: 1.40 kcal Total: -68.91 0.76 -68.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148820424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.556 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds