Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38752 * 119.28355 * 2 1 4 4 C 1.37940 * 119.60789 * 180.02562 * 3 2 1 5 5 C 1.41081 * 118.26487 * 359.97438 * 4 3 2 6 6 C 1.41016 * 120.70258 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00141 * 149.86549 * 6 5 4 8 8 C 1.39967 * 119.99731 * 329.85683 * 6 5 4 9 9 N 1.30840 * 120.00206 * 335.22229 * 8 6 5 10 10 Si 1.86804 * 119.99651 * 155.22282 * 8 6 5 11 11 H 1.48493 * 109.47103 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.47041 * 300.00136 * 10 8 6 13 13 H 1.48500 * 109.47446 * 59.99776 * 10 8 6 14 14 C 1.41576 * 118.58992 * 0.27320 * 5 4 3 15 15 N 1.38692 * 119.88995 * 179.70820 * 14 5 4 16 16 C 1.36957 * 120.09729 * 308.26719 * 15 14 5 17 17 C 1.35315 * 119.26298 * 179.72742 * 16 15 14 18 18 F 1.35102 * 120.26486 * 180.26756 * 17 16 15 19 19 C 1.41170 * 119.46311 * 0.54734 * 17 16 15 20 20 O 1.35235 * 119.90936 * 179.70264 * 19 17 16 21 21 N 1.32001 * 120.17766 * 359.72021 * 19 17 16 22 22 C 1.34122 * 120.75762 * 0.02562 * 21 19 17 23 23 N 1.31466 * 119.73342 * 179.97438 * 22 21 19 24 24 N 1.31899 * 119.28270 * 180.02562 * 2 1 3 25 25 H 1.08990 * 109.47004 * 90.00516 * 1 2 3 26 26 H 1.09004 * 109.46773 * 210.00354 * 1 2 3 27 27 H 1.09000 * 109.46650 * 330.00229 * 1 2 3 28 28 H 1.08007 * 120.19486 * 0.03677 * 3 2 1 29 29 H 1.07996 * 120.86956 * 179.97438 * 4 3 2 30 30 H 0.96996 * 119.99947 * 354.19332 * 9 8 6 31 31 H 1.08000 * 120.36699 * 0.02562 * 16 15 14 32 32 H 0.96701 * 113.99826 * 270.01621 * 20 19 17 33 33 H 0.97001 * 120.00117 * 5.08654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.2102 0.0000 4 6 3.5651 1.2180 -0.0005 5 6 4.2402 -0.0208 -0.0005 6 6 5.6494 -0.0728 -0.0005 7 1 6.1592 -0.9010 0.4691 8 6 6.3873 0.9490 -0.6092 9 7 5.8495 1.6656 -1.5627 10 14 8.1401 1.2894 -0.0603 11 1 8.6988 2.4120 -0.8558 12 1 8.1463 1.6514 1.3799 13 1 8.9690 0.0750 -0.2689 14 6 3.4728 -1.2105 -0.0059 15 7 4.1087 -2.4431 -0.0121 16 6 5.0753 -2.7125 -0.9442 17 6 5.6888 -3.9185 -0.9314 18 9 6.6489 -4.2038 -1.8380 19 6 5.3132 -4.8783 0.0333 20 8 5.9161 -6.0887 0.0506 21 7 4.3749 -4.5976 0.9183 22 6 3.7653 -3.4030 0.9161 23 7 2.8331 -3.1450 1.8065 24 7 2.1522 -1.1504 -0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 1.6372 2.1406 0.0006 29 1 4.1139 2.1481 -0.0010 30 1 4.9719 1.4358 -1.9059 31 1 5.3484 -1.9688 -1.6783 32 1 5.4771 -6.7546 -0.4962 33 1 2.6400 -3.7879 2.5068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155422732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = 19.742776 kcal Electronic energy + Delta-G solvation = -22965.350376 eV Core-core repulsion = 19327.935445 eV Total energy + Delta-G solvation = -3637.414931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.44783 -40.92611 -38.93217 -37.62794 -35.01062 -34.32460 -33.25677 -31.09289 -30.61601 -28.82791 -27.88330 -25.04721 -24.09471 -23.18292 -21.60408 -21.06872 -18.77377 -18.58464 -18.33831 -17.84692 -16.49537 -16.16790 -15.51479 -15.09165 -14.78744 -14.56676 -14.18845 -14.08996 -13.81031 -13.40499 -13.09057 -12.91706 -12.81023 -12.12658 -11.97816 -11.69354 -11.64043 -11.35155 -11.11630 -10.83018 -10.59879 -10.13043 -9.89490 -9.78522 -9.50255 -9.15109 -8.69090 -8.46175 -8.07524 -7.63725 -7.05451 -4.92762 0.76863 1.81646 2.16829 2.47826 2.79283 2.99269 3.04532 3.18926 3.43530 3.74039 3.91894 4.19332 4.32802 4.80628 4.95701 5.07735 5.41897 5.62510 5.75969 5.82111 5.97809 6.21056 6.23162 6.28425 6.31165 6.48371 6.64374 6.70517 6.95553 7.20863 7.28881 7.31654 7.46565 7.50634 7.71397 8.00744 8.17346 8.29425 8.86096 9.20085 9.62708 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.008761 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.884977 B = 3195.293268 C = 5130.765508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 C -0.120 4.120 4 C -0.167 4.167 5 C 0.067 3.933 6 C -0.514 4.514 7 H 0.082 0.918 8 C 0.045 3.955 9 N -0.776 5.776 10 Si 1.060 2.940 11 H -0.269 1.269 12 H -0.271 1.271 13 H -0.270 1.270 14 C 0.179 3.821 15 N -0.393 5.393 16 C 0.224 3.776 17 C -0.126 4.126 18 F -0.125 7.125 19 C 0.428 3.572 20 O -0.475 6.475 21 N -0.561 5.561 22 C 0.538 3.462 23 N -0.715 5.715 24 N -0.416 5.416 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.299 0.701 31 H 0.189 0.811 32 H 0.410 0.590 33 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -4.669 -2.160 5.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.134 4.134 3 C -0.140 4.140 4 C -0.193 4.193 5 C 0.060 3.940 6 C -0.541 4.541 7 H 0.100 0.900 8 C -0.180 4.180 9 N -0.397 5.397 10 Si 0.882 3.118 11 H -0.194 1.194 12 H -0.196 1.196 13 H -0.195 1.195 14 C -0.050 4.050 15 N -0.084 5.084 16 C 0.083 3.917 17 C -0.160 4.160 18 F -0.105 7.105 19 C 0.216 3.784 20 O -0.283 6.283 21 N -0.294 5.294 22 C 0.169 3.831 23 N -0.350 5.350 24 N -0.125 5.125 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.206 0.794 32 H 0.270 0.730 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.165 -3.699 -1.139 3.874 hybrid contribution -0.309 -1.015 -0.400 1.134 sum -0.144 -4.714 -1.539 4.961 Atomic orbital electron populations 1.20298 0.90699 1.01465 1.00748 1.20112 0.95060 0.87163 1.11091 1.21538 0.94868 0.97692 0.99940 1.21374 0.93271 0.97163 1.07481 1.18149 0.94101 0.90164 0.91547 1.20487 0.90927 1.09767 1.32941 0.90005 1.27112 1.07149 0.91095 0.92621 1.70520 1.18557 1.34227 1.16436 0.83671 0.72384 0.78151 0.77557 1.19350 1.19645 1.19466 1.17686 0.88066 0.81876 1.17354 1.41063 1.30512 1.12509 1.24356 1.22310 0.85018 0.94596 0.89783 1.17171 1.02540 0.96807 0.99443 1.91478 1.60858 1.93499 1.64639 1.20015 0.85566 0.86149 0.86689 1.84582 1.51999 1.19101 1.72590 1.69604 1.13286 1.20025 1.26471 1.19759 0.91554 0.81360 0.90385 1.70174 1.17655 1.37952 1.09230 1.66093 1.08543 1.30128 1.07725 0.92898 0.92086 0.92497 0.87205 0.86098 0.88767 0.79390 0.72981 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.15 36.01 0.37 -0.90 16 2 C 0.01 0.16 6.79 -82.37 -0.56 -0.40 16 3 C -0.12 -2.47 9.70 -39.50 -0.38 -2.85 16 4 C -0.17 -3.74 8.11 -38.61 -0.31 -4.05 16 5 C 0.07 1.58 5.13 -106.49 -0.55 1.04 16 6 C -0.51 -11.82 6.88 -37.88 -0.26 -12.08 16 7 H 0.08 1.92 7.10 -52.49 -0.37 1.55 16 8 C 0.04 0.98 4.95 -17.33 -0.09 0.89 16 9 N -0.78 -17.67 12.51 55.55 0.69 -16.98 16 10 Si 1.06 19.35 30.00 -169.99 -5.10 14.25 16 11 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 12 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 13 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 14 C 0.18 4.21 6.15 -154.55 -0.95 3.26 16 15 N -0.39 -8.54 2.63 -63.28 -0.17 -8.70 16 16 C 0.22 4.23 8.37 -16.30 -0.14 4.09 16 17 C -0.13 -2.17 7.30 -39.51 -0.29 -2.46 16 18 F -0.13 -2.03 17.14 2.25 0.04 -1.99 16 19 C 0.43 7.28 7.81 -16.37 -0.13 7.15 16 20 O -0.48 -6.44 13.44 -17.40 -0.23 -6.68 16 21 N -0.56 -10.93 10.49 -13.74 -0.14 -11.07 16 22 C 0.54 11.75 8.34 -322.75 -2.69 9.05 16 23 N -0.71 -16.19 12.68 29.77 0.38 -15.81 16 24 N -0.42 -9.79 9.32 -8.01 -0.07 -9.87 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 29 H 0.12 2.71 6.95 -52.49 -0.36 2.35 16 30 H 0.30 6.93 6.87 -40.82 -0.28 6.65 16 31 H 0.19 3.41 7.27 -52.49 -0.38 3.03 16 32 H 0.41 3.16 9.06 45.56 0.41 3.58 16 33 H 0.34 7.08 8.90 -40.82 -0.36 6.71 16 LS Contribution 297.77 15.07 4.49 4.49 Total: -1.00 -28.21 297.77 -7.93 -36.14 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -1.83 Total: 13.46 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -5.98 Total: 2.76 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.69 Total: -62.43 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.23 Total: -6.68 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.10 Total: 14.25 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.21 -7.93 -36.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155422732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.883 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds