Wall clock time and date at job start Tue Mar 31 2020 07:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38752 * 119.28355 * 2 1 4 4 C 1.37940 * 119.60789 * 180.02562 * 3 2 1 5 5 C 1.41081 * 118.26487 * 359.97438 * 4 3 2 6 6 C 1.41016 * 120.70258 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00141 * 149.86549 * 6 5 4 8 8 C 1.39967 * 119.99731 * 329.85683 * 6 5 4 9 9 N 1.30840 * 120.00206 * 335.22229 * 8 6 5 10 10 Si 1.86804 * 119.99651 * 155.22282 * 8 6 5 11 11 H 1.48493 * 109.47103 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.47041 * 300.00136 * 10 8 6 13 13 H 1.48500 * 109.47446 * 59.99776 * 10 8 6 14 14 C 1.41576 * 118.58992 * 0.27320 * 5 4 3 15 15 N 1.38692 * 119.88995 * 179.70820 * 14 5 4 16 16 C 1.36957 * 120.09729 * 308.26719 * 15 14 5 17 17 C 1.35315 * 119.26298 * 179.72742 * 16 15 14 18 18 F 1.35102 * 120.26486 * 180.26756 * 17 16 15 19 19 C 1.41170 * 119.46311 * 0.54734 * 17 16 15 20 20 O 1.35235 * 119.90936 * 179.70264 * 19 17 16 21 21 N 1.32001 * 120.17766 * 359.72021 * 19 17 16 22 22 C 1.34122 * 120.75762 * 0.02562 * 21 19 17 23 23 N 1.31466 * 119.73342 * 179.97438 * 22 21 19 24 24 N 1.31899 * 119.28270 * 180.02562 * 2 1 3 25 25 H 1.08990 * 109.47004 * 90.00516 * 1 2 3 26 26 H 1.09004 * 109.46773 * 210.00354 * 1 2 3 27 27 H 1.09000 * 109.46650 * 330.00229 * 1 2 3 28 28 H 1.08007 * 120.19486 * 0.03677 * 3 2 1 29 29 H 1.07996 * 120.86956 * 179.97438 * 4 3 2 30 30 H 0.96996 * 119.99947 * 354.19332 * 9 8 6 31 31 H 1.08000 * 120.36699 * 0.02562 * 16 15 14 32 32 H 0.96701 * 113.99826 * 270.01621 * 20 19 17 33 33 H 0.97001 * 120.00117 * 5.08654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.2102 0.0000 4 6 3.5651 1.2180 -0.0005 5 6 4.2402 -0.0208 -0.0005 6 6 5.6494 -0.0728 -0.0005 7 1 6.1592 -0.9010 0.4691 8 6 6.3873 0.9490 -0.6092 9 7 5.8495 1.6656 -1.5627 10 14 8.1401 1.2894 -0.0603 11 1 8.6988 2.4120 -0.8558 12 1 8.1463 1.6514 1.3799 13 1 8.9690 0.0750 -0.2689 14 6 3.4728 -1.2105 -0.0059 15 7 4.1087 -2.4431 -0.0121 16 6 5.0753 -2.7125 -0.9442 17 6 5.6888 -3.9185 -0.9314 18 9 6.6489 -4.2038 -1.8380 19 6 5.3132 -4.8783 0.0333 20 8 5.9161 -6.0887 0.0506 21 7 4.3749 -4.5976 0.9183 22 6 3.7653 -3.4030 0.9161 23 7 2.8331 -3.1450 1.8065 24 7 2.1522 -1.1504 -0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 1.6372 2.1406 0.0006 29 1 4.1139 2.1481 -0.0010 30 1 4.9719 1.4358 -1.9059 31 1 5.3484 -1.9688 -1.6783 32 1 5.4771 -6.7546 -0.4962 33 1 2.6400 -3.7879 2.5068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155422732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:09 Heat of formation + Delta-G solvation = 1.967981 kcal Electronic energy + Delta-G solvation = -22966.121149 eV Core-core repulsion = 19327.935445 eV Total energy + Delta-G solvation = -3638.185703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.84883 -42.48331 -40.50404 -38.97523 -36.66609 -35.88393 -34.78235 -32.73149 -32.22703 -30.37551 -29.48891 -26.56750 -25.67272 -24.77755 -23.18671 -22.71248 -20.26886 -19.99420 -19.91417 -19.39838 -17.97624 -17.72225 -17.05215 -16.59674 -16.41776 -15.92658 -15.67460 -15.59811 -15.35537 -14.98357 -14.64002 -14.52532 -14.25296 -13.61769 -13.42107 -13.17977 -13.04281 -12.87405 -12.62944 -12.36744 -12.02408 -11.73365 -11.38748 -11.24659 -11.12791 -10.77588 -10.39869 -10.15669 -9.75213 -9.34713 -8.66469 -6.67087 -0.68675 0.33744 0.49696 0.76939 1.22779 1.50867 1.57804 1.77690 2.09800 2.23573 2.36542 2.55338 2.82729 3.27304 3.35606 3.64321 3.89176 4.15541 4.19873 4.27229 4.44372 4.69088 4.76257 4.83460 4.91620 4.95313 5.11534 5.17338 5.32316 5.56522 5.59062 5.70211 5.80966 6.00881 6.37135 6.46358 6.52584 6.58932 7.27432 7.52525 7.89054 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.008761 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.884977 B = 3195.293268 C = 5130.765508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.000 4.000 3 C -0.118 4.118 4 C -0.179 4.179 5 C 0.046 3.954 6 C -0.527 4.527 7 H 0.071 0.929 8 C 0.022 3.978 9 N -0.790 5.790 10 Si 1.101 2.899 11 H -0.265 1.265 12 H -0.270 1.270 13 H -0.257 1.257 14 C 0.166 3.834 15 N -0.404 5.404 16 C 0.210 3.790 17 C -0.105 4.105 18 F -0.115 7.115 19 C 0.446 3.554 20 O -0.468 6.468 21 N -0.573 5.573 22 C 0.534 3.466 23 N -0.747 5.747 24 N -0.441 5.441 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.116 0.884 30 H 0.289 0.711 31 H 0.189 0.811 32 H 0.438 0.562 33 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 -5.075 -2.479 5.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.142 4.142 3 C -0.138 4.138 4 C -0.205 4.205 5 C 0.039 3.961 6 C -0.555 4.555 7 H 0.089 0.911 8 C -0.198 4.198 9 N -0.411 5.411 10 Si 0.919 3.081 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.182 1.182 14 C -0.062 4.062 15 N -0.096 5.096 16 C 0.071 3.929 17 C -0.138 4.138 18 F -0.094 7.094 19 C 0.234 3.766 20 O -0.280 6.280 21 N -0.307 5.307 22 C 0.166 3.834 23 N -0.385 5.385 24 N -0.151 5.151 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.163 0.837 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.206 0.794 32 H 0.304 0.696 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.519 -4.163 -1.508 4.458 hybrid contribution -0.455 -1.014 -0.353 1.166 sum 0.064 -5.177 -1.861 5.502 Atomic orbital electron populations 1.20370 0.87640 1.02509 1.02190 1.20945 0.97211 0.86894 1.09178 1.21876 0.94290 0.99059 0.98570 1.21458 0.94307 0.96634 1.08114 1.18412 0.94671 0.90801 0.92214 1.20445 0.90928 1.10193 1.33918 0.91121 1.28106 1.09482 0.90407 0.91844 1.70601 1.18277 1.34904 1.17325 0.83156 0.69193 0.78560 0.77183 1.18950 1.19492 1.18159 1.17920 0.88336 0.82632 1.17305 1.41101 1.31192 1.12189 1.25131 1.22408 0.85100 0.95468 0.89916 1.17121 1.01636 0.96072 0.98987 1.91514 1.60307 1.93316 1.64247 1.20017 0.84096 0.87193 0.85269 1.84551 1.51757 1.18377 1.73324 1.69638 1.14513 1.18926 1.27641 1.19907 0.91489 0.81900 0.90101 1.70146 1.19118 1.38931 1.10281 1.66218 1.08737 1.31319 1.08776 0.91146 0.92814 0.89657 0.83749 0.86638 0.89885 0.79353 0.69623 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.21 10.15 71.24 0.72 -1.49 16 2 C 0.00 0.00 6.79 42.67 0.29 0.29 16 3 C -0.12 -4.73 9.70 22.32 0.22 -4.51 16 4 C -0.18 -8.07 8.11 22.90 0.19 -7.89 16 5 C 0.05 2.20 5.13 -21.08 -0.11 2.09 16 6 C -0.53 -24.67 6.88 23.37 0.16 -24.50 16 7 H 0.07 3.39 7.10 -2.91 -0.02 3.37 16 8 C 0.02 0.97 4.95 85.26 0.42 1.39 16 9 N -0.79 -36.25 12.51 21.83 0.27 -35.97 16 10 Si 1.10 38.51 30.00 68.60 2.06 40.57 16 11 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 12 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 13 H -0.26 -8.42 7.11 99.48 0.71 -7.72 16 14 C 0.17 7.96 6.15 133.83 0.82 8.78 16 15 N -0.40 -17.74 2.63 -354.11 -0.93 -18.67 16 16 C 0.21 7.93 8.37 83.22 0.70 8.63 16 17 C -0.11 -3.47 7.30 22.32 0.16 -3.30 16 18 F -0.11 -3.45 17.14 44.97 0.77 -2.68 16 19 C 0.45 14.32 7.81 85.39 0.67 14.98 16 20 O -0.47 -11.25 13.44 -85.18 -1.14 -12.39 16 21 N -0.57 -21.85 10.49 -310.62 -3.26 -25.11 16 22 C 0.53 23.46 8.34 261.47 2.18 25.64 16 23 N -0.75 -34.36 12.68 -59.74 -0.76 -35.12 16 24 N -0.44 -20.87 9.32 -179.25 -1.67 -22.54 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 28 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 29 H 0.12 5.25 6.95 -2.91 -0.02 5.23 16 30 H 0.29 13.66 6.87 -92.71 -0.64 13.02 16 31 H 0.19 6.98 7.27 -2.91 -0.02 6.95 16 32 H 0.44 5.16 9.06 -74.06 -0.67 4.49 16 33 H 0.35 14.60 8.90 -92.71 -0.82 13.77 16 Total: -1.00 -60.69 297.77 1.60 -59.08 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.16 Total: 32.72 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 6.42 Total: 20.11 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -6.35 Total: -137.41 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.14 Total: -12.39 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.77 Total: -2.68 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.06 Total: 40.57 kcal Total: -60.69 1.60 -59.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155422732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.051 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds