Wall clock time and date at job start Tue Mar 31 2020 06:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86798 * 120.00322 * 2 1 4 4 H 1.48499 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47171 * 299.99663 * 3 2 1 6 6 H 1.48497 * 109.46983 * 60.00066 * 3 2 1 7 7 C 1.40029 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99871 * 163.16283 * 7 2 1 9 9 C 1.41554 * 119.99706 * 343.15852 * 7 2 1 10 10 C 1.41181 * 120.99725 * 336.10621 * 9 7 2 11 11 C 1.36562 * 119.14974 * 180.02562 * 10 9 7 12 12 N 1.32099 * 121.26253 * 0.02562 * 11 10 9 13 13 C 1.32526 * 122.21881 * 359.70437 * 12 11 10 14 14 N 1.39077 * 119.65762 * 180.31729 * 13 12 11 15 15 C 1.46508 * 120.00022 * 185.26616 * 14 13 12 16 16 C 1.52994 * 109.46780 * 90.00147 * 15 14 13 17 17 O 1.42899 * 109.47523 * 65.00158 * 16 15 14 18 18 C 1.46501 * 120.00061 * 5.26666 * 14 13 12 19 19 C 1.53008 * 109.46939 * 89.99989 * 18 14 13 20 20 F 1.39899 * 109.46952 * 60.00406 * 19 18 14 21 21 F 1.39900 * 109.46855 * 179.97438 * 19 18 14 22 22 F 1.39893 * 109.47015 * 300.00139 * 19 18 14 23 23 C 1.38746 * 120.68540 * 0.58840 * 13 12 11 24 24 H 0.97009 * 119.99685 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.42707 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.37161 * 179.97438 * 11 10 9 27 27 H 1.09003 * 109.46781 * 209.99691 * 15 14 13 28 28 H 1.09002 * 109.46993 * 330.00116 * 15 14 13 29 29 H 1.09008 * 109.47000 * 185.00301 * 16 15 14 30 30 H 1.08999 * 109.47239 * 304.99899 * 16 15 14 31 31 H 0.96701 * 114.00201 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47142 * 209.99458 * 18 14 13 33 33 H 1.08991 * 109.47126 * 330.00286 * 18 14 13 34 34 H 1.08003 * 120.66856 * 179.70925 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3461 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8828 2.3963 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0528 -1.2329 -0.2704 9 6 1.3451 -2.4121 0.3563 10 6 0.1903 -2.3916 1.1681 11 6 -0.4185 -3.5713 1.4887 12 7 0.0531 -4.7263 1.0543 13 6 1.1297 -4.8057 0.2856 14 7 1.5761 -6.0499 -0.1470 15 6 2.8285 -6.1577 -0.8996 16 6 3.9917 -6.3634 0.0728 17 8 3.8407 -7.6194 0.7373 18 6 0.7941 -7.2526 0.1500 19 6 -0.2054 -7.5031 -0.9811 20 9 0.4865 -7.6819 -2.1838 21 9 -0.9518 -8.6519 -0.6978 22 9 -1.0644 -6.4049 -1.0960 23 6 1.8193 -3.6611 -0.0876 24 1 -0.4850 0.8402 -0.0004 25 1 -0.2067 -1.4551 1.5310 26 1 -1.3019 -3.5599 2.1098 27 1 2.7706 -7.0061 -1.5815 28 1 2.9893 -5.2430 -1.4702 29 1 4.9320 -6.3548 -0.4786 30 1 3.9953 -5.5605 0.8099 31 1 4.5447 -7.8168 1.3702 32 1 1.4634 -8.1083 0.2394 33 1 0.2551 -7.1133 1.0870 34 1 2.6994 -3.7266 -0.7102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155777495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:17 Heat of formation + Delta-G solvation = -168.677889 kcal Electronic energy + Delta-G solvation = -23816.612319 eV Core-core repulsion = 19720.337669 eV Total energy + Delta-G solvation = -4096.274650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 4.05 seconds Orbital eigenvalues (eV) -49.56634 -47.16899 -46.96131 -38.87868 -37.11265 -35.45403 -33.90751 -31.06241 -30.08967 -29.41014 -26.49742 -25.85949 -23.09384 -22.59202 -21.12870 -20.17478 -18.24799 -18.00768 -17.74255 -17.18933 -16.81313 -15.74794 -15.63797 -15.00557 -14.50023 -14.16875 -14.01907 -13.96366 -13.64098 -13.53490 -13.42861 -13.20445 -13.17529 -13.02264 -12.79175 -12.40307 -12.01824 -11.75010 -11.52284 -11.38744 -11.26205 -11.15283 -10.82916 -10.30459 -9.96733 -9.83312 -9.45385 -8.96092 -8.02007 -7.96745 -6.89864 -6.57939 -4.61193 2.74150 2.91136 3.01292 3.06086 3.19739 3.31387 3.49080 3.84341 4.29571 4.42976 4.58883 4.66575 4.79003 5.28090 5.32258 5.43613 5.58906 5.70952 5.76571 5.87942 6.03554 6.08947 6.60077 6.80493 6.86918 6.95465 7.19910 7.44869 7.54468 7.66515 7.80785 7.99611 8.27926 8.54112 8.76747 8.81696 9.66273 10.06308 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020416 B = 0.005041 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.162784 B = 5553.352433 C = 6272.655346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.079 3.921 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.155 3.845 10 C -0.239 4.239 11 C 0.117 3.883 12 N -0.612 5.612 13 C 0.393 3.607 14 N -0.608 5.608 15 C 0.132 3.868 16 C 0.056 3.944 17 O -0.572 6.572 18 C 0.107 3.893 19 C 0.424 3.576 20 F -0.194 7.194 21 F -0.196 7.196 22 F -0.171 7.171 23 C -0.328 4.328 24 H 0.282 0.718 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.374 0.626 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -9.378 0.105 10.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.147 3.853 10 C -0.263 4.263 11 C -0.032 4.032 12 N -0.334 5.334 13 C 0.165 3.835 14 N -0.324 5.324 15 C 0.008 3.992 16 C -0.023 4.023 17 O -0.377 6.377 18 C -0.021 4.021 19 C 0.367 3.633 20 F -0.176 7.176 21 F -0.177 7.177 22 F -0.153 7.153 23 C -0.354 4.354 24 H 0.093 0.907 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.220 0.780 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.958 -10.069 -0.090 10.820 hybrid contribution 1.013 1.627 -0.225 1.930 sum 4.971 -8.442 -0.316 9.802 Atomic orbital electron populations 1.69811 1.07723 1.29417 1.33716 1.25971 0.94733 1.01507 0.91917 0.86230 0.80956 0.80696 0.78685 1.18321 1.19870 1.19572 1.19602 0.97800 0.90806 1.40416 0.90190 1.17589 0.89910 0.91524 0.86284 1.21808 1.01234 0.98157 1.05079 1.21353 0.97219 0.87761 0.96855 1.66670 1.16469 1.29843 1.20427 1.17868 0.90938 0.83393 0.91335 1.45738 1.22711 1.02790 1.61158 1.21483 0.82083 1.03061 0.92600 1.22794 0.97775 0.85757 0.95956 1.86447 1.52812 1.38369 1.60059 1.22221 0.93354 0.91283 0.95220 1.22022 0.82725 0.73571 0.84967 1.93106 1.79260 1.95217 1.50014 1.93119 1.79039 1.52029 1.93559 1.93234 1.71998 1.53689 1.96361 1.21118 1.07702 0.91914 1.14659 0.90672 0.85890 0.86311 0.90442 0.88416 0.93294 0.92723 0.78006 0.87275 0.86077 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.62 10.92 55.55 0.61 -19.01 16 2 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 3 Si 0.91 17.89 29.59 -169.99 -5.03 12.85 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.62 9.12 -37.65 -0.34 -11.96 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 9 C 0.16 4.03 5.60 -106.56 -0.60 3.44 16 10 C -0.24 -6.10 8.74 -39.07 -0.34 -6.44 16 11 C 0.12 2.79 11.10 -18.04 -0.20 2.59 16 12 N -0.61 -14.36 8.73 -12.82 -0.11 -14.47 16 13 C 0.39 8.82 6.92 -154.99 -1.07 7.74 16 14 N -0.61 -11.13 2.46 -173.89 -0.43 -11.56 16 15 C 0.13 1.99 5.45 -4.04 -0.02 1.97 16 16 C 0.06 0.73 7.39 37.15 0.27 1.00 16 17 O -0.57 -7.00 12.48 -35.23 -0.44 -7.44 16 18 C 0.11 1.77 5.31 -4.04 -0.02 1.75 16 19 C 0.42 7.29 3.29 37.16 0.12 7.41 16 20 F -0.19 -3.29 16.22 2.25 0.04 -3.25 16 21 F -0.20 -3.14 17.32 2.25 0.04 -3.10 16 22 F -0.17 -3.53 16.49 2.25 0.04 -3.49 16 23 C -0.33 -7.77 9.07 -38.43 -0.35 -8.12 16 24 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 25 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 26 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 27 H 0.08 1.08 7.25 -51.93 -0.38 0.70 16 28 H 0.10 1.51 5.98 -51.93 -0.31 1.20 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.37 2.93 9.12 45.56 0.42 3.35 16 32 H 0.11 1.56 7.12 -51.93 -0.37 1.19 16 33 H 0.12 2.10 7.29 -51.93 -0.38 1.72 16 34 H 0.10 2.16 6.03 -52.48 -0.32 1.85 16 LS Contribution 302.25 15.07 4.55 4.55 Total: -1.00 -29.20 302.25 -5.85 -35.05 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -2.48 Total: 8.66 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.64 Total: 1.20 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.07 Total: -45.04 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.44 Total: -7.44 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 0.11 Total: -9.84 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.20 -5.85 -35.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155777495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.626 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.05 seconds