Wall clock time and date at job start Tue Mar 31 2020 06:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86798 * 120.00322 * 2 1 4 4 H 1.48499 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47171 * 299.99663 * 3 2 1 6 6 H 1.48497 * 109.46983 * 60.00066 * 3 2 1 7 7 C 1.40029 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99871 * 163.16283 * 7 2 1 9 9 C 1.41554 * 119.99706 * 343.15852 * 7 2 1 10 10 C 1.41181 * 120.99725 * 336.10621 * 9 7 2 11 11 C 1.36562 * 119.14974 * 180.02562 * 10 9 7 12 12 N 1.32099 * 121.26253 * 0.02562 * 11 10 9 13 13 C 1.32526 * 122.21881 * 359.70437 * 12 11 10 14 14 N 1.39077 * 119.65762 * 180.31729 * 13 12 11 15 15 C 1.46508 * 120.00022 * 185.26616 * 14 13 12 16 16 C 1.52994 * 109.46780 * 90.00147 * 15 14 13 17 17 O 1.42899 * 109.47523 * 65.00158 * 16 15 14 18 18 C 1.46501 * 120.00061 * 5.26666 * 14 13 12 19 19 C 1.53008 * 109.46939 * 89.99989 * 18 14 13 20 20 F 1.39899 * 109.46952 * 60.00406 * 19 18 14 21 21 F 1.39900 * 109.46855 * 179.97438 * 19 18 14 22 22 F 1.39893 * 109.47015 * 300.00139 * 19 18 14 23 23 C 1.38746 * 120.68540 * 0.58840 * 13 12 11 24 24 H 0.97009 * 119.99685 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.42707 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.37161 * 179.97438 * 11 10 9 27 27 H 1.09003 * 109.46781 * 209.99691 * 15 14 13 28 28 H 1.09002 * 109.46993 * 330.00116 * 15 14 13 29 29 H 1.09008 * 109.47000 * 185.00301 * 16 15 14 30 30 H 1.08999 * 109.47239 * 304.99899 * 16 15 14 31 31 H 0.96701 * 114.00201 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47142 * 209.99458 * 18 14 13 33 33 H 1.08991 * 109.47126 * 330.00286 * 18 14 13 34 34 H 1.08003 * 120.66856 * 179.70925 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3461 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8828 2.3963 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0528 -1.2329 -0.2704 9 6 1.3451 -2.4121 0.3563 10 6 0.1903 -2.3916 1.1681 11 6 -0.4185 -3.5713 1.4887 12 7 0.0531 -4.7263 1.0543 13 6 1.1297 -4.8057 0.2856 14 7 1.5761 -6.0499 -0.1470 15 6 2.8285 -6.1577 -0.8996 16 6 3.9917 -6.3634 0.0728 17 8 3.8407 -7.6194 0.7373 18 6 0.7941 -7.2526 0.1500 19 6 -0.2054 -7.5031 -0.9811 20 9 0.4865 -7.6819 -2.1838 21 9 -0.9518 -8.6519 -0.6978 22 9 -1.0644 -6.4049 -1.0960 23 6 1.8193 -3.6611 -0.0876 24 1 -0.4850 0.8402 -0.0004 25 1 -0.2067 -1.4551 1.5310 26 1 -1.3019 -3.5599 2.1098 27 1 2.7706 -7.0061 -1.5815 28 1 2.9893 -5.2430 -1.4702 29 1 4.9320 -6.3548 -0.4786 30 1 3.9953 -5.5605 0.8099 31 1 4.5447 -7.8168 1.3702 32 1 1.4634 -8.1083 0.2394 33 1 0.2551 -7.1133 1.0870 34 1 2.6994 -3.7266 -0.7102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155777495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:13 Heat of formation + Delta-G solvation = -186.919122 kcal Electronic energy + Delta-G solvation = -23817.403319 eV Core-core repulsion = 19720.337669 eV Total energy + Delta-G solvation = -4097.065649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -50.97029 -48.51963 -48.44781 -40.56046 -38.40112 -36.78161 -35.67903 -32.75622 -31.61297 -30.96953 -28.02990 -27.64805 -24.47116 -24.08644 -22.86481 -21.76733 -19.74965 -19.41394 -19.22014 -18.41444 -18.21280 -17.42304 -17.06419 -16.56880 -16.11626 -15.79566 -15.43413 -15.37446 -15.05788 -14.92567 -14.89061 -14.65272 -14.62463 -14.47262 -14.29792 -14.03702 -13.54635 -13.15030 -13.10151 -12.95652 -12.71403 -12.66335 -12.25942 -11.93679 -11.73056 -11.23603 -10.89620 -10.56494 -9.91013 -9.81627 -8.70285 -8.26695 -6.53421 0.97736 1.13115 1.40364 1.55276 1.58846 1.83535 2.06068 2.20254 2.80232 3.00739 3.18515 3.37281 3.47534 3.83417 4.00743 4.13991 4.26959 4.34595 4.52230 4.56843 4.74366 4.76099 5.00286 5.03016 5.09232 5.19145 5.32530 5.61549 5.82616 6.02683 6.23832 6.44876 6.71492 6.87203 6.93813 6.97939 7.82735 8.28006 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020416 B = 0.005041 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.162784 B = 5553.352433 C = 6272.655346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.127 3.873 10 C -0.264 4.264 11 C 0.116 3.884 12 N -0.618 5.618 13 C 0.395 3.605 14 N -0.606 5.606 15 C 0.122 3.878 16 C 0.067 3.933 17 O -0.583 6.583 18 C 0.112 3.888 19 C 0.426 3.574 20 F -0.191 7.191 21 F -0.187 7.187 22 F -0.194 7.194 23 C -0.342 4.342 24 H 0.291 0.709 25 H 0.110 0.890 26 H 0.141 0.859 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.394 0.606 32 H 0.138 0.862 33 H 0.113 0.887 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -10.085 -0.109 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.118 3.882 10 C -0.289 4.289 11 C -0.034 4.034 12 N -0.341 5.341 13 C 0.166 3.834 14 N -0.321 5.321 15 C 0.000 4.000 16 C -0.012 4.012 17 O -0.391 6.391 18 C -0.016 4.016 19 C 0.370 3.630 20 F -0.173 7.173 21 F -0.168 7.168 22 F -0.176 7.176 23 C -0.368 4.368 24 H 0.101 0.899 25 H 0.127 0.873 26 H 0.158 0.842 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.244 0.756 32 H 0.156 0.844 33 H 0.131 0.869 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.306 -10.832 -0.311 12.066 hybrid contribution 0.587 1.685 -0.180 1.793 sum 5.893 -9.148 -0.491 10.893 Atomic orbital electron populations 1.69864 1.09266 1.30869 1.33974 1.26859 0.95455 1.04770 0.90805 0.85094 0.79507 0.75788 0.78939 1.17808 1.19124 1.18861 1.19882 0.98142 0.91802 1.41773 0.89960 1.17993 0.90520 0.92817 0.86826 1.21767 1.02224 0.98235 1.06633 1.21694 0.97591 0.87508 0.96578 1.66804 1.16953 1.29397 1.20898 1.18091 0.90147 0.84879 0.90322 1.45922 1.23678 1.01866 1.60661 1.21749 0.81528 1.03486 0.93262 1.22575 0.97940 0.85464 0.95210 1.86375 1.54322 1.37613 1.60790 1.22328 0.93440 0.91357 0.94438 1.22075 0.82516 0.73206 0.85224 1.93111 1.79085 1.95149 1.49913 1.93136 1.78877 1.51332 1.93491 1.93194 1.72836 1.55069 1.96496 1.21275 1.08503 0.91817 1.15234 0.89850 0.87257 0.84159 0.88712 0.89130 0.90102 0.94932 0.75611 0.84406 0.86879 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.65 10.92 21.84 0.24 -41.41 16 2 C 0.04 1.86 5.20 85.29 0.44 2.31 16 3 Si 0.99 36.53 29.59 68.60 2.03 38.56 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.49 -25.29 9.12 23.52 0.21 -25.07 16 8 H 0.08 4.08 7.90 -2.91 -0.02 4.05 16 9 C 0.13 6.75 5.60 -21.12 -0.12 6.64 16 10 C -0.26 -13.91 8.74 22.60 0.20 -13.71 16 11 C 0.12 5.60 11.10 84.26 0.94 6.53 16 12 N -0.62 -29.00 8.73 -194.47 -1.70 -30.69 16 13 C 0.40 17.68 6.92 132.91 0.92 18.60 16 14 N -0.61 -21.39 2.46 -704.07 -1.73 -23.13 16 15 C 0.12 3.46 5.45 86.38 0.47 3.93 16 16 C 0.07 1.57 7.39 71.98 0.53 2.10 16 17 O -0.58 -12.46 12.48 -148.98 -1.86 -14.32 16 18 C 0.11 3.48 5.31 86.38 0.46 3.93 16 19 C 0.43 13.99 3.29 71.98 0.24 14.23 16 20 F -0.19 -6.08 16.22 44.97 0.73 -5.35 16 21 F -0.19 -5.63 17.32 44.97 0.78 -4.85 16 22 F -0.19 -7.89 16.49 44.97 0.74 -7.15 16 23 C -0.34 -16.43 9.07 23.01 0.21 -16.22 16 24 H 0.29 13.33 8.29 -92.70 -0.77 12.56 16 25 H 0.11 5.95 6.20 -2.91 -0.02 5.93 16 26 H 0.14 5.96 8.06 -2.91 -0.02 5.93 16 27 H 0.09 2.36 7.25 -2.39 -0.02 2.35 16 28 H 0.09 2.69 5.98 -2.39 -0.01 2.68 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.39 4.94 9.12 -74.06 -0.68 4.27 16 32 H 0.14 3.52 7.12 -2.38 -0.02 3.50 16 33 H 0.11 3.76 7.29 -2.39 -0.02 3.74 16 34 H 0.11 4.92 6.03 -2.91 -0.02 4.90 16 Total: -1.00 -63.04 302.25 4.22 -58.83 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.49 Total: 26.25 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 4.50 Total: 3.27 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -3.19 Total: -95.23 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -1.86 Total: -14.32 kcal Atomic # 9 Polarization: -19.60 SS G_CDS: 2.25 Total: -17.35 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -63.04 4.22 -58.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155777495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.091 kcal (2) G-P(sol) polarization free energy of solvation -63.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds