Wall clock time and date at job start Tue Mar 31 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99800 * 2 1 4 4 H 1.48505 * 109.47410 * 174.63717 * 3 2 1 5 5 H 1.48505 * 109.47317 * 294.63372 * 3 2 1 6 6 H 1.48501 * 109.47638 * 54.63129 * 3 2 1 7 7 C 1.37877 * 120.00054 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84880 * 164.55603 * 7 2 1 9 9 C 1.53231 * 108.53630 * 231.32617 * 8 7 2 10 10 C 1.52952 * 109.40638 * 305.37284 * 9 8 7 11 11 H 1.09006 * 109.40876 * 303.56492 * 10 9 8 12 12 N 1.46496 * 109.41468 * 183.70452 * 10 9 8 13 13 C 1.38566 * 119.99783 * 154.99711 * 12 10 9 14 14 N 1.32734 * 119.17019 * 0.02562 * 13 12 10 15 15 C 1.31665 * 121.46704 * 179.97438 * 14 13 12 16 16 C 1.41022 * 119.31994 * 0.02562 * 15 14 13 17 17 N 1.34533 * 129.97650 * 180.02562 * 16 15 14 18 18 C 1.28034 * 118.03416 * 179.97438 * 17 16 15 19 19 S 1.75863 * 110.51068 * 0.02562 * 18 17 16 20 20 C 1.40210 * 117.16733 * 359.97438 * 16 15 14 21 21 N 1.32109 * 119.16623 * 179.97438 * 13 12 10 22 22 C 1.52953 * 109.81820 * 63.59504 * 10 9 8 23 23 C 1.51263 * 120.85299 * 344.53166 * 7 2 1 24 24 H 0.96995 * 120.00252 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.63167 * 111.60759 * 8 7 2 26 26 H 1.09001 * 109.78494 * 351.13424 * 8 7 2 27 27 H 1.09005 * 109.48002 * 185.39071 * 9 8 7 28 28 H 1.09005 * 109.49309 * 65.36046 * 9 8 7 29 29 H 0.96994 * 119.99989 * 334.99578 * 12 10 9 30 30 H 1.07997 * 120.34055 * 179.97438 * 15 14 13 31 31 H 1.08000 * 124.74641 * 180.02562 * 18 17 16 32 32 H 1.09003 * 109.48515 * 56.38447 * 22 10 9 33 33 H 1.09005 * 109.48674 * 176.42733 * 22 10 9 34 34 H 1.08995 * 109.63003 * 248.39072 * 23 7 2 35 35 H 1.09003 * 109.62401 * 8.76750 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3496 0.1309 5 1 1.9912 2.3383 -1.2727 6 1 1.7948 2.4517 1.1417 7 6 2.0046 -1.1940 0.0005 8 6 3.4765 -1.2400 -0.3453 9 6 3.6900 -2.3056 -1.4255 10 6 3.1134 -3.6385 -0.9455 11 1 3.5736 -3.9112 0.0043 12 7 3.3955 -4.6772 -1.9393 13 6 3.4579 -6.0066 -1.5534 14 7 3.2591 -6.3204 -0.2791 15 6 3.3076 -7.5686 0.1370 16 6 3.5771 -8.5958 -0.7908 17 7 3.6747 -9.9247 -0.6049 18 6 3.9311 -10.6575 -1.6230 19 16 4.0954 -9.6689 -3.0681 20 6 3.7803 -8.2162 -2.1251 21 7 3.7129 -6.9298 -2.4633 22 6 1.6008 -3.5117 -0.7579 23 6 1.3086 -2.4915 0.3475 24 1 -0.4850 0.8400 -0.0004 25 1 4.0534 -1.4982 0.5428 26 1 3.7978 -0.2685 -0.7208 27 1 4.7569 -2.4193 -1.6181 28 1 3.1856 -2.0004 -2.3423 29 1 3.5385 -4.4344 -2.8674 30 1 3.1434 -7.8033 1.1783 31 1 4.0322 -11.7325 -1.5979 32 1 1.1455 -3.1778 -1.6903 33 1 1.1867 -4.4802 -0.4773 34 1 1.6847 -2.8655 1.2996 35 1 0.2341 -2.3227 0.4192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:33 Heat of formation + Delta-G solvation = 78.853751 kcal Electronic energy + Delta-G solvation = -20124.544811 eV Core-core repulsion = 17055.906301 eV Total energy + Delta-G solvation = -3068.638510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 8.61 seconds Orbital eigenvalues (eV) -41.30286 -38.55835 -37.21167 -34.29021 -33.69502 -31.84848 -29.71419 -29.58143 -27.20199 -25.32776 -24.51967 -22.45187 -21.77853 -21.31689 -19.66648 -18.78349 -18.15903 -17.33149 -16.22923 -15.68702 -15.64405 -15.01184 -14.42842 -14.28661 -14.17634 -13.81128 -13.25533 -12.93460 -12.55397 -12.30003 -12.13199 -11.72536 -11.53382 -11.45398 -11.09931 -10.99395 -10.84981 -10.29329 -10.05128 -10.00586 -9.82697 -9.59775 -9.06308 -9.02010 -8.99702 -8.79417 -8.40811 -7.74897 -6.17973 -4.03966 0.27352 0.80148 0.88702 1.49095 2.24726 2.98988 3.22582 3.33428 3.35229 3.76095 3.76894 4.12412 4.33368 4.34274 4.75078 5.03814 5.10221 5.51272 5.55904 5.80367 5.85640 6.08903 6.42360 6.48292 6.60391 6.66812 6.71197 6.88417 6.99370 7.03893 7.19242 7.32460 7.35695 7.52596 7.60411 7.71877 7.79583 8.27316 8.34211 8.91743 9.49190 10.91609 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.044902 B = 0.003341 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.428810 B = 8379.429539 C = 8603.635033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.497 4.497 8 C -0.009 4.009 9 C -0.114 4.114 10 C 0.163 3.837 11 H 0.085 0.915 12 N -0.673 5.673 13 C 0.593 3.407 14 N -0.538 5.538 15 C 0.279 3.721 16 C -0.110 4.110 17 N -0.423 5.423 18 C 0.068 3.932 19 S 0.082 5.918 20 C 0.128 3.872 21 N -0.553 5.553 22 C -0.112 4.112 23 C 0.014 3.986 24 H 0.264 0.736 25 H 0.017 0.983 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.411 0.589 30 H 0.183 0.817 31 H 0.211 0.789 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.006 0.994 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 -17.345 -4.004 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.515 4.515 8 C -0.047 4.047 9 C -0.152 4.152 10 C 0.061 3.939 11 H 0.103 0.897 12 N -0.304 5.304 13 C 0.233 3.767 14 N -0.258 5.258 15 C 0.098 3.902 16 C -0.238 4.238 17 N -0.133 5.133 18 C -0.241 4.241 19 S 0.328 5.672 20 C -0.132 4.132 21 N -0.282 5.282 22 C -0.151 4.151 23 C -0.024 4.024 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.248 0.752 30 H 0.200 0.800 31 H 0.228 0.772 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.025 0.975 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.740 -16.439 -4.702 18.768 hybrid contribution 0.257 0.689 0.269 0.783 sum 7.997 -15.750 -4.433 18.212 Atomic orbital electron populations 1.69913 1.06328 1.26983 1.48486 1.24822 0.94539 0.98621 0.94327 0.86781 0.80998 0.83779 0.77774 1.18582 1.20966 1.21123 1.19987 0.92292 0.92470 1.46779 1.19690 0.97300 0.94154 0.93605 1.21891 0.97393 0.94842 1.01119 1.21264 0.97679 0.84728 0.90267 0.89656 1.45128 1.71699 1.00597 1.12976 1.19367 0.86205 0.87074 0.84099 1.67949 1.21315 1.19961 1.16560 1.22928 0.84036 0.84080 0.99161 1.20518 1.16902 0.91442 0.94894 1.65913 1.12421 1.03288 1.31713 1.28873 1.03162 1.03546 0.88491 1.85098 1.73031 0.96073 1.13045 1.24438 0.97610 0.96823 0.94319 1.67290 1.25927 0.98437 1.36504 1.21975 0.92862 0.98639 1.01593 1.19344 0.99266 0.91862 0.91928 0.92587 0.96442 0.94467 0.94273 0.92316 0.75230 0.80004 0.77246 0.93156 0.94790 0.97543 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 12.81 55.43 0.71 -24.06 16 2 C 0.08 2.14 5.43 -17.82 -0.10 2.04 16 3 Si 0.88 20.27 27.63 -169.99 -4.70 15.57 16 4 H -0.26 -5.77 6.14 56.52 0.35 -5.43 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -12.60 5.44 -98.93 -0.54 -13.14 16 8 C -0.01 -0.21 5.46 -27.49 -0.15 -0.36 16 9 C -0.11 -2.16 5.40 -26.64 -0.14 -2.30 16 10 C 0.16 3.06 2.34 -67.98 -0.16 2.90 16 11 H 0.09 1.69 7.51 -51.93 -0.39 1.30 16 12 N -0.67 -11.23 5.22 -55.83 -0.29 -11.53 16 13 C 0.59 10.07 8.41 -322.76 -2.71 7.36 16 14 N -0.54 -8.86 9.14 -13.43 -0.12 -8.99 16 15 C 0.28 3.86 11.38 -16.57 -0.19 3.67 16 16 C -0.11 -1.53 7.01 -84.89 -0.60 -2.13 16 17 N -0.42 -5.09 10.55 -11.56 -0.12 -5.21 16 18 C 0.07 0.60 12.40 51.18 0.63 1.23 16 19 S 0.08 0.86 23.39 -107.50 -2.51 -1.65 16 20 C 0.13 1.88 7.75 -16.23 -0.13 1.75 16 21 N -0.55 -9.12 10.48 -12.57 -0.13 -9.25 16 22 C -0.11 -2.37 5.52 -26.63 -0.15 -2.51 16 23 C 0.01 0.34 5.99 -27.49 -0.16 0.18 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.82 5.03 -51.93 -0.26 0.55 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.41 6.19 8.71 -40.82 -0.36 5.83 16 30 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.06 1.54 7.11 -51.93 -0.37 1.18 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -29.64 303.76 -10.93 -40.57 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.95 Total: 1.27 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -4.39 Total: -1.31 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.04 Total: -59.02 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.70 Total: 15.57 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.64 -10.93 -40.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.421 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.61 seconds