Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99800 * 2 1 4 4 H 1.48505 * 109.47410 * 174.63717 * 3 2 1 5 5 H 1.48505 * 109.47317 * 294.63372 * 3 2 1 6 6 H 1.48501 * 109.47638 * 54.63129 * 3 2 1 7 7 C 1.37877 * 120.00054 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84880 * 164.55603 * 7 2 1 9 9 C 1.53231 * 108.53630 * 231.32617 * 8 7 2 10 10 C 1.52952 * 109.40638 * 305.37284 * 9 8 7 11 11 H 1.09006 * 109.40876 * 303.56492 * 10 9 8 12 12 N 1.46496 * 109.41468 * 183.70452 * 10 9 8 13 13 C 1.38566 * 119.99783 * 154.99711 * 12 10 9 14 14 N 1.32734 * 119.17019 * 0.02562 * 13 12 10 15 15 C 1.31665 * 121.46704 * 179.97438 * 14 13 12 16 16 C 1.41022 * 119.31994 * 0.02562 * 15 14 13 17 17 N 1.34533 * 129.97650 * 180.02562 * 16 15 14 18 18 C 1.28034 * 118.03416 * 179.97438 * 17 16 15 19 19 S 1.75863 * 110.51068 * 0.02562 * 18 17 16 20 20 C 1.40210 * 117.16733 * 359.97438 * 16 15 14 21 21 N 1.32109 * 119.16623 * 179.97438 * 13 12 10 22 22 C 1.52953 * 109.81820 * 63.59504 * 10 9 8 23 23 C 1.51263 * 120.85299 * 344.53166 * 7 2 1 24 24 H 0.96995 * 120.00252 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.63167 * 111.60759 * 8 7 2 26 26 H 1.09001 * 109.78494 * 351.13424 * 8 7 2 27 27 H 1.09005 * 109.48002 * 185.39071 * 9 8 7 28 28 H 1.09005 * 109.49309 * 65.36046 * 9 8 7 29 29 H 0.96994 * 119.99989 * 334.99578 * 12 10 9 30 30 H 1.07997 * 120.34055 * 179.97438 * 15 14 13 31 31 H 1.08000 * 124.74641 * 180.02562 * 18 17 16 32 32 H 1.09003 * 109.48515 * 56.38447 * 22 10 9 33 33 H 1.09005 * 109.48674 * 176.42733 * 22 10 9 34 34 H 1.08995 * 109.63003 * 248.39072 * 23 7 2 35 35 H 1.09003 * 109.62401 * 8.76750 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3496 0.1309 5 1 1.9912 2.3383 -1.2727 6 1 1.7948 2.4517 1.1417 7 6 2.0046 -1.1940 0.0005 8 6 3.4765 -1.2400 -0.3453 9 6 3.6900 -2.3056 -1.4255 10 6 3.1134 -3.6385 -0.9455 11 1 3.5736 -3.9112 0.0043 12 7 3.3955 -4.6772 -1.9393 13 6 3.4579 -6.0066 -1.5534 14 7 3.2591 -6.3204 -0.2791 15 6 3.3076 -7.5686 0.1370 16 6 3.5771 -8.5958 -0.7908 17 7 3.6747 -9.9247 -0.6049 18 6 3.9311 -10.6575 -1.6230 19 16 4.0954 -9.6689 -3.0681 20 6 3.7803 -8.2162 -2.1251 21 7 3.7129 -6.9298 -2.4633 22 6 1.6008 -3.5117 -0.7579 23 6 1.3086 -2.4915 0.3475 24 1 -0.4850 0.8400 -0.0004 25 1 4.0534 -1.4982 0.5428 26 1 3.7978 -0.2685 -0.7208 27 1 4.7569 -2.4193 -1.6181 28 1 3.1856 -2.0004 -2.3423 29 1 3.5385 -4.4344 -2.8674 30 1 3.1434 -7.8033 1.1783 31 1 4.0322 -11.7325 -1.5979 32 1 1.1455 -3.1778 -1.6903 33 1 1.1867 -4.4802 -0.4773 34 1 1.6847 -2.8655 1.2996 35 1 0.2341 -2.3227 0.4192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = 60.936355 kcal Electronic energy + Delta-G solvation = -20125.321767 eV Core-core repulsion = 17055.906301 eV Total energy + Delta-G solvation = -3069.415467 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.37824 -39.75137 -38.60172 -35.80421 -34.84622 -33.58107 -31.46041 -30.83842 -28.76951 -26.44713 -25.56336 -23.96708 -23.39698 -22.69890 -21.28321 -19.82475 -19.39534 -18.35660 -18.01737 -16.79291 -16.73431 -16.39942 -16.27438 -15.23349 -15.16980 -15.12229 -14.91634 -14.51097 -14.07347 -13.89732 -13.59364 -13.39075 -12.81393 -12.74645 -12.65227 -12.60087 -12.53705 -11.89642 -11.80261 -11.39008 -11.25828 -10.89539 -10.84753 -10.59688 -10.36813 -10.14712 -9.90018 -8.96161 -8.18223 -6.07339 -0.70217 -0.20277 -0.12379 0.63528 1.30557 1.39372 1.45633 1.54773 1.78162 2.43024 2.64418 2.86764 3.07551 3.11400 3.27449 3.79104 3.99005 4.14869 4.22108 4.50136 4.57706 4.71454 4.87491 4.95508 4.99768 5.03095 5.20557 5.23210 5.27736 5.53586 5.57844 5.64156 5.73590 5.83252 5.93744 6.27761 6.37333 6.45194 6.96329 7.11342 7.48050 8.93355 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.044902 B = 0.003341 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.428810 B = 8379.429539 C = 8603.635033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.025 3.975 3 Si 0.936 3.064 4 H -0.241 1.241 5 H -0.283 1.283 6 H -0.290 1.290 7 C -0.505 4.505 8 C -0.012 4.012 9 C -0.107 4.107 10 C 0.183 3.817 11 H 0.078 0.922 12 N -0.676 5.676 13 C 0.575 3.425 14 N -0.562 5.562 15 C 0.270 3.730 16 C -0.106 4.106 17 N -0.450 5.450 18 C 0.101 3.899 19 S 0.120 5.880 20 C 0.086 3.914 21 N -0.565 5.565 22 C -0.098 4.098 23 C 0.012 3.988 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.417 0.583 30 H 0.210 0.790 31 H 0.264 0.736 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.004 0.996 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.079 -19.729 -4.714 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.165 1.165 5 H -0.209 1.209 6 H -0.217 1.217 7 C -0.524 4.524 8 C -0.050 4.050 9 C -0.145 4.145 10 C 0.079 3.921 11 H 0.096 0.904 12 N -0.310 5.310 13 C 0.215 3.785 14 N -0.283 5.283 15 C 0.091 3.909 16 C -0.233 4.233 17 N -0.161 5.161 18 C -0.206 4.206 19 S 0.366 5.634 20 C -0.173 4.173 21 N -0.294 5.294 22 C -0.137 4.137 23 C -0.026 4.026 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.255 0.745 30 H 0.227 0.773 31 H 0.279 0.721 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.022 0.978 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 9.992 -18.893 -5.424 22.050 hybrid contribution -0.429 1.057 0.478 1.236 sum 9.564 -17.837 -4.946 20.835 Atomic orbital electron populations 1.70054 1.07998 1.27514 1.50996 1.25627 0.95156 1.01978 0.94667 0.85863 0.80828 0.79785 0.77334 1.16451 1.20945 1.21652 1.20583 0.94197 0.92431 1.45167 1.19716 0.94901 0.95566 0.94860 1.21754 0.99291 0.93710 0.99753 1.20787 0.95147 0.85481 0.90683 0.90433 1.44704 1.73199 1.00346 1.12711 1.19435 0.87257 0.87156 0.84638 1.67941 1.22298 1.21437 1.16606 1.23396 0.83488 0.83502 1.00505 1.20729 1.15470 0.92456 0.94620 1.66013 1.14983 1.02340 1.32743 1.29932 0.98512 1.05281 0.86915 1.85035 1.71730 0.93703 1.12933 1.25070 0.98800 0.97261 0.96124 1.67291 1.26224 0.99238 1.36611 1.21752 0.95281 0.97284 0.99371 1.19283 0.97048 0.93168 0.93089 0.92852 0.95841 0.94039 0.91283 0.92488 0.74478 0.77336 0.72088 0.94703 0.94915 0.97756 0.96008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.15 12.81 21.45 0.27 -53.88 16 2 C 0.02 1.33 5.43 84.65 0.46 1.79 16 3 Si 0.94 41.85 27.63 68.60 1.90 43.75 16 4 H -0.24 -9.89 6.14 99.48 0.61 -9.28 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.50 -25.95 5.44 -16.17 -0.09 -26.03 16 8 C -0.01 -0.53 5.46 30.11 0.16 -0.36 16 9 C -0.11 -3.90 5.40 30.66 0.17 -3.73 16 10 C 0.18 6.82 2.34 44.96 0.11 6.92 16 11 H 0.08 3.04 7.51 -2.38 -0.02 3.02 16 12 N -0.68 -22.36 5.22 -330.55 -1.73 -24.09 16 13 C 0.58 19.46 8.41 261.47 2.20 21.65 16 14 N -0.56 -18.44 9.14 -196.41 -1.80 -20.23 16 15 C 0.27 7.25 11.38 85.40 0.97 8.22 16 16 C -0.11 -2.77 7.01 39.89 0.28 -2.49 16 17 N -0.45 -9.45 10.55 -190.41 -2.01 -11.45 16 18 C 0.10 1.35 12.40 130.80 1.62 2.97 16 19 S 0.12 2.14 23.39 -56.49 -1.32 0.82 16 20 C 0.09 2.39 7.75 84.97 0.66 3.04 16 21 N -0.56 -18.29 10.48 -193.68 -2.03 -20.32 16 22 C -0.10 -4.25 5.52 30.66 0.17 -4.08 16 23 C 0.01 0.62 5.99 30.10 0.18 0.80 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 1.73 5.03 -2.39 -0.01 1.72 16 27 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.42 12.37 8.71 -92.71 -0.81 11.56 16 30 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.26 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.02 1.22 7.11 -2.39 -0.02 1.20 16 Total: -1.00 -66.49 303.76 0.41 -66.08 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.24 Total: 10.64 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.89 Total: 8.69 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -7.29 Total: -129.98 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.90 Total: 43.75 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -66.49 0.41 -66.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.021 kcal (2) G-P(sol) polarization free energy of solvation -66.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds