Wall clock time and date at job start Tue Mar 31 2020 07:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38675 * 119.27587 * 2 1 4 4 C 1.38015 * 119.62462 * 179.77401 * 3 2 1 5 5 C 1.40997 * 118.28188 * 0.49134 * 4 3 2 6 6 C 1.41019 * 120.70790 * 179.73211 * 5 4 3 7 7 H 1.07999 * 120.00136 * 204.90394 * 6 5 4 8 8 C 1.39950 * 119.99719 * 24.91304 * 6 5 4 9 9 N 1.30860 * 120.00249 * 14.48990 * 8 6 5 10 10 Si 1.86805 * 119.99612 * 194.49686 * 8 6 5 11 11 H 1.48498 * 109.47260 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47144 * 119.99488 * 10 8 6 13 13 H 1.48502 * 109.46779 * 239.99495 * 10 8 6 14 14 C 1.41711 * 118.58800 * 359.75142 * 5 4 3 15 15 N 1.38088 * 119.90622 * 180.02562 * 14 5 4 16 16 C 1.46502 * 119.99970 * 179.97438 * 15 14 5 17 17 C 1.52996 * 109.46975 * 179.97438 * 16 15 14 18 18 O 1.42909 * 109.47078 * 65.00323 * 17 16 15 19 19 C 1.42901 * 113.99891 * 179.97438 * 18 17 16 20 20 F 1.39896 * 109.47275 * 60.00165 * 19 18 17 21 21 F 1.39900 * 109.46832 * 179.97438 * 19 18 17 22 22 F 1.39901 * 109.47039 * 299.99988 * 19 18 17 23 23 N 1.31963 * 119.27199 * 180.27497 * 2 1 3 24 24 H 1.09007 * 109.46511 * 269.72773 * 1 2 3 25 25 H 1.08997 * 109.47223 * 149.72730 * 1 2 3 26 26 H 1.08998 * 109.46892 * 29.72164 * 1 2 3 27 27 H 1.07999 * 120.19126 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.85513 * 180.22631 * 4 3 2 29 29 H 0.97008 * 120.00261 * 180.02562 * 9 8 6 30 30 H 0.96995 * 119.99920 * 359.97438 * 15 14 5 31 31 H 1.09003 * 109.47203 * 300.00300 * 16 15 14 32 32 H 1.09004 * 109.46975 * 60.00400 * 16 15 14 33 33 H 1.09002 * 109.47329 * 184.99683 * 17 16 15 34 34 H 1.08995 * 109.47671 * 305.00004 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2180 0.0047 5 6 4.2409 -0.0195 -0.0012 6 6 5.6502 -0.0706 -0.0024 7 1 6.1588 -0.9362 -0.4005 8 6 6.3896 1.0003 0.5123 9 7 5.7998 1.9111 1.2437 10 14 8.2186 1.1297 0.1551 11 1 8.6406 -0.0175 -0.6882 12 1 8.4941 2.4000 -0.5628 13 1 8.9751 1.1090 1.4328 14 6 3.4737 -1.2109 -0.0063 15 7 4.1073 -2.4378 -0.0117 16 6 3.3161 -3.6709 -0.0164 17 6 4.2548 -4.8790 -0.0224 18 8 4.9976 -4.9112 1.1980 19 6 5.9089 -6.0077 1.2950 20 9 6.8357 -5.9377 0.2494 21 9 6.5827 -5.9471 2.5195 22 9 5.2009 -7.2114 1.2108 23 7 2.1523 -1.1511 -0.0055 24 1 -0.3632 -0.0049 1.0278 25 1 -0.3633 -0.8875 -0.5180 26 1 -0.3633 0.8925 -0.5095 27 1 1.6365 2.1399 0.0004 28 1 4.1135 2.1485 0.0085 29 1 6.3122 2.6537 1.6002 30 1 5.0762 -2.4833 -0.0123 31 1 2.6878 -3.7028 0.8737 32 1 2.6871 -3.6955 -0.9063 33 1 3.6692 -5.7937 -0.1154 34 1 4.9425 -4.8007 -0.8644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157392479.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:25 Heat of formation + Delta-G solvation = -185.481700 kcal Electronic energy + Delta-G solvation = -22996.567077 eV Core-core repulsion = 18899.563759 eV Total energy + Delta-G solvation = -4097.003318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.20871 -47.94803 -47.90453 -38.78458 -38.17310 -34.90664 -34.10637 -31.17716 -30.37912 -28.54158 -27.39390 -25.21648 -23.98022 -22.64199 -20.78969 -20.53683 -19.47439 -19.00466 -18.71775 -17.24533 -16.29398 -15.89907 -15.34218 -15.07839 -14.76606 -14.67111 -14.35351 -14.27376 -14.08063 -14.05601 -13.85708 -13.64136 -13.51296 -13.01028 -12.72394 -12.53872 -12.01867 -11.65699 -11.54495 -11.44927 -11.32746 -11.15190 -10.84134 -10.80230 -10.48085 -9.76655 -9.28857 -8.91437 -8.10175 -7.87719 -6.79481 -6.51678 -4.22456 1.89184 2.70596 3.05688 3.07142 3.09923 3.11343 3.22103 3.92610 4.00942 4.08310 4.26769 4.67214 4.83166 5.05025 5.15219 5.61315 5.76651 5.82937 6.11276 6.13745 6.30710 6.43852 6.44899 6.56775 6.79785 6.92478 7.13066 7.21532 7.64688 7.78563 8.00612 8.26630 8.47850 8.64842 8.79026 8.97444 9.76002 10.21082 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.005686 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.945455 B = 4923.501732 C = 6915.340756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.025 3.975 3 C -0.185 4.185 4 C -0.122 4.122 5 C 0.030 3.970 6 C -0.453 4.453 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.799 5.799 10 Si 0.907 3.093 11 H -0.261 1.261 12 H -0.273 1.273 13 H -0.275 1.275 14 C 0.306 3.694 15 N -0.729 5.729 16 C 0.153 3.847 17 C 0.042 3.958 18 O -0.362 6.362 19 C 0.592 3.408 20 F -0.177 7.177 21 F -0.144 7.144 22 F -0.181 7.181 23 N -0.530 5.530 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.279 0.721 30 H 0.405 0.595 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -11.145 -1.763 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.149 4.149 5 C 0.023 3.977 6 C -0.484 4.484 7 H 0.092 0.908 8 C -0.143 4.143 9 N -0.426 5.426 10 Si 0.732 3.268 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.201 1.201 14 C 0.068 3.932 15 N -0.371 5.371 16 C 0.027 3.973 17 C -0.033 4.033 18 O -0.285 6.285 19 C 0.500 3.500 20 F -0.160 7.160 21 F -0.125 7.125 22 F -0.163 7.163 23 N -0.248 5.248 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.242 0.758 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.890 -11.673 -1.489 11.802 hybrid contribution 1.927 0.651 -0.044 2.034 sum 1.037 -11.023 -1.533 11.177 Atomic orbital electron populations 1.20285 0.91796 1.00647 1.00389 1.19946 0.94268 0.88004 1.08718 1.21239 0.95385 0.96637 1.07458 1.21410 0.92095 0.98329 1.03035 1.17919 0.93910 0.90069 0.95826 1.19172 0.90767 1.02770 1.35711 0.90770 1.25806 1.00836 0.94865 0.92747 1.69803 1.38220 1.10581 1.23958 0.86279 0.82228 0.79264 0.79067 1.18507 1.19819 1.20062 1.18354 0.87927 0.85365 1.01507 1.43613 1.07491 1.01001 1.84962 1.20935 0.92110 0.81750 1.02510 1.23387 0.94836 1.01293 0.83754 1.88483 1.53730 1.43692 1.42607 1.19612 0.77972 0.77815 0.74578 1.93256 1.67727 1.95973 1.59015 1.93264 1.79618 1.96095 1.43557 1.93237 1.78877 1.48130 1.96062 1.66312 1.08289 1.29959 1.20229 0.93229 0.92804 0.92927 0.88755 0.85401 0.91016 0.75753 0.91714 0.90449 0.90006 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.15 36.01 0.37 -0.96 16 2 C 0.03 0.57 6.79 -82.37 -0.56 0.01 16 3 C -0.18 -4.36 9.69 -39.50 -0.38 -4.74 16 4 C -0.12 -3.17 8.79 -38.62 -0.34 -3.51 16 5 C 0.03 0.78 5.60 -106.47 -0.60 0.18 16 6 C -0.45 -11.53 8.54 -37.89 -0.32 -11.85 16 7 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 8 C 0.07 1.82 5.23 -17.32 -0.09 1.73 16 9 N -0.80 -20.46 10.83 55.55 0.60 -19.86 16 10 Si 0.91 18.49 29.58 -169.99 -5.03 13.46 16 11 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 14 C 0.31 7.41 7.52 -155.02 -1.17 6.24 16 15 N -0.73 -14.78 5.56 -59.97 -0.33 -15.11 16 16 C 0.15 2.43 6.06 -4.04 -0.02 2.40 16 17 C 0.04 0.53 5.79 37.16 0.22 0.74 16 18 O -0.36 -5.22 10.52 -35.23 -0.37 -5.59 16 19 C 0.59 7.51 3.75 101.05 0.38 7.89 16 20 F -0.18 -2.22 16.86 2.25 0.04 -2.19 16 21 F -0.14 -1.92 17.53 2.25 0.04 -1.88 16 22 F -0.18 -2.09 16.86 2.25 0.04 -2.05 16 23 N -0.53 -12.58 9.44 -8.11 -0.08 -12.66 16 24 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.13 3.40 6.17 -52.49 -0.32 3.07 16 29 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 30 H 0.41 8.10 6.67 -40.82 -0.27 7.83 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 0.79 7.73 -51.93 -0.40 0.39 16 34 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -28.11 308.39 -6.38 -34.49 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -3.42 Total: 8.59 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.52 Total: -1.85 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.19 Total: -47.63 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.37 Total: -5.59 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.12 Total: -6.12 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.11 -6.38 -34.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157392479.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.987 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds