Wall clock time and date at job start Tue Mar 31 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38675 * 119.27587 * 2 1 4 4 C 1.38015 * 119.62462 * 179.77401 * 3 2 1 5 5 C 1.40997 * 118.28188 * 0.49134 * 4 3 2 6 6 C 1.41019 * 120.70790 * 179.73211 * 5 4 3 7 7 H 1.07999 * 120.00136 * 204.90394 * 6 5 4 8 8 C 1.39950 * 119.99719 * 24.91304 * 6 5 4 9 9 N 1.30860 * 120.00249 * 14.48990 * 8 6 5 10 10 Si 1.86805 * 119.99612 * 194.49686 * 8 6 5 11 11 H 1.48498 * 109.47260 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47144 * 119.99488 * 10 8 6 13 13 H 1.48502 * 109.46779 * 239.99495 * 10 8 6 14 14 C 1.41711 * 118.58800 * 359.75142 * 5 4 3 15 15 N 1.38088 * 119.90622 * 180.02562 * 14 5 4 16 16 C 1.46502 * 119.99970 * 179.97438 * 15 14 5 17 17 C 1.52996 * 109.46975 * 179.97438 * 16 15 14 18 18 O 1.42909 * 109.47078 * 65.00323 * 17 16 15 19 19 C 1.42901 * 113.99891 * 179.97438 * 18 17 16 20 20 F 1.39896 * 109.47275 * 60.00165 * 19 18 17 21 21 F 1.39900 * 109.46832 * 179.97438 * 19 18 17 22 22 F 1.39901 * 109.47039 * 299.99988 * 19 18 17 23 23 N 1.31963 * 119.27199 * 180.27497 * 2 1 3 24 24 H 1.09007 * 109.46511 * 269.72773 * 1 2 3 25 25 H 1.08997 * 109.47223 * 149.72730 * 1 2 3 26 26 H 1.08998 * 109.46892 * 29.72164 * 1 2 3 27 27 H 1.07999 * 120.19126 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.85513 * 180.22631 * 4 3 2 29 29 H 0.97008 * 120.00261 * 180.02562 * 9 8 6 30 30 H 0.96995 * 119.99920 * 359.97438 * 15 14 5 31 31 H 1.09003 * 109.47203 * 300.00300 * 16 15 14 32 32 H 1.09004 * 109.46975 * 60.00400 * 16 15 14 33 33 H 1.09002 * 109.47329 * 184.99683 * 17 16 15 34 34 H 1.08995 * 109.47671 * 305.00004 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2180 0.0047 5 6 4.2409 -0.0195 -0.0012 6 6 5.6502 -0.0706 -0.0024 7 1 6.1588 -0.9362 -0.4005 8 6 6.3896 1.0003 0.5123 9 7 5.7998 1.9111 1.2437 10 14 8.2186 1.1297 0.1551 11 1 8.6406 -0.0175 -0.6882 12 1 8.4941 2.4000 -0.5628 13 1 8.9751 1.1090 1.4328 14 6 3.4737 -1.2109 -0.0063 15 7 4.1073 -2.4378 -0.0117 16 6 3.3161 -3.6709 -0.0164 17 6 4.2548 -4.8790 -0.0224 18 8 4.9976 -4.9112 1.1980 19 6 5.9089 -6.0077 1.2950 20 9 6.8357 -5.9377 0.2494 21 9 6.5827 -5.9471 2.5195 22 9 5.2009 -7.2114 1.2108 23 7 2.1523 -1.1511 -0.0055 24 1 -0.3632 -0.0049 1.0278 25 1 -0.3633 -0.8875 -0.5180 26 1 -0.3633 0.8925 -0.5095 27 1 1.6365 2.1399 0.0004 28 1 4.1135 2.1485 0.0085 29 1 6.3122 2.6537 1.6002 30 1 5.0762 -2.4833 -0.0123 31 1 2.6878 -3.7028 0.8737 32 1 2.6871 -3.6955 -0.9063 33 1 3.6692 -5.7937 -0.1154 34 1 4.9425 -4.8007 -0.8644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157392479.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:24 Heat of formation + Delta-G solvation = -202.223495 kcal Electronic energy + Delta-G solvation = -22997.293056 eV Core-core repulsion = 18899.563759 eV Total energy + Delta-G solvation = -4097.729297 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.20074 -48.95645 -48.87713 -40.46612 -39.38657 -36.46044 -35.92888 -32.81930 -32.10328 -30.01631 -29.08834 -26.32123 -25.66083 -23.99533 -22.55586 -22.24973 -20.49530 -19.99593 -19.75556 -19.12272 -17.87376 -17.46071 -16.65699 -16.46715 -16.05488 -15.70388 -15.58881 -15.46559 -15.31809 -15.14299 -15.08737 -15.01686 -14.97092 -14.32678 -14.22491 -14.08768 -13.73716 -13.32513 -13.16964 -12.99166 -12.76265 -12.62739 -12.49703 -12.12336 -11.85491 -11.58785 -11.11083 -10.60698 -9.95711 -9.74964 -8.62141 -8.29494 -6.12076 0.87309 0.91894 1.23575 1.40004 1.50749 1.53643 2.06170 2.22334 2.72046 2.84184 2.99313 3.12958 3.74096 3.79312 4.01184 4.10973 4.29833 4.55084 4.56685 4.76021 4.78230 4.98892 5.03634 5.08700 5.17957 5.21763 5.28154 5.45184 5.82113 5.92069 6.15208 6.41885 6.77778 6.83215 6.92366 7.14404 7.93087 8.40547 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.005686 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.945455 B = 4923.501732 C = 6915.340756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.023 3.977 3 C -0.201 4.201 4 C -0.145 4.145 5 C -0.008 4.008 6 C -0.477 4.477 7 H 0.079 0.921 8 C 0.031 3.969 9 N -0.835 5.835 10 Si 0.978 3.022 11 H -0.255 1.255 12 H -0.268 1.268 13 H -0.272 1.272 14 C 0.301 3.699 15 N -0.727 5.727 16 C 0.151 3.849 17 C 0.047 3.953 18 O -0.385 6.385 19 C 0.600 3.400 20 F -0.176 7.176 21 F -0.150 7.150 22 F -0.171 7.171 23 N -0.538 5.538 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.284 0.716 30 H 0.404 0.596 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -12.453 -2.302 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C -0.223 4.223 4 C -0.171 4.171 5 C -0.015 4.015 6 C -0.509 4.509 7 H 0.097 0.903 8 C -0.182 4.182 9 N -0.462 5.462 10 Si 0.800 3.200 11 H -0.178 1.178 12 H -0.193 1.193 13 H -0.197 1.197 14 C 0.062 3.938 15 N -0.367 5.367 16 C 0.027 3.973 17 C -0.027 4.027 18 O -0.309 6.309 19 C 0.508 3.492 20 F -0.158 7.158 21 F -0.131 7.131 22 F -0.154 7.154 23 N -0.258 5.258 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.241 0.759 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.118 -13.020 -2.034 13.225 hybrid contribution 1.865 1.003 0.134 2.122 sum 0.747 -12.017 -1.901 12.189 Atomic orbital electron populations 1.20346 0.88115 1.02394 1.01739 1.20797 0.96783 0.87463 1.06133 1.21494 0.94750 0.98177 1.07870 1.21434 0.93298 0.97904 1.04492 1.18281 0.94814 0.91022 0.97364 1.19404 0.91001 1.03743 1.36736 0.90250 1.26641 1.05228 0.94214 0.92083 1.69876 1.40070 1.11337 1.24962 0.85210 0.76546 0.79405 0.78889 1.17805 1.19302 1.19710 1.18648 0.88309 0.86403 1.00432 1.43770 1.07787 1.01268 1.83827 1.21081 0.92581 0.81286 1.02333 1.23420 0.94876 1.00911 0.83504 1.88443 1.54316 1.44661 1.43507 1.19417 0.77717 0.77669 0.74386 1.93262 1.67664 1.95975 1.58875 1.93253 1.79741 1.96124 1.43999 1.93256 1.78649 1.47450 1.96004 1.66502 1.07921 1.30305 1.21023 0.91908 0.91707 0.90578 0.86601 0.87119 0.90533 0.75879 0.92957 0.89402 0.86496 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.28 10.15 71.24 0.72 -1.56 16 2 C 0.02 1.01 6.79 42.64 0.29 1.30 16 3 C -0.20 -9.49 9.69 22.32 0.22 -9.27 16 4 C -0.14 -7.72 8.79 22.89 0.20 -7.52 16 5 C -0.01 -0.42 5.60 -21.06 -0.12 -0.54 16 6 C -0.48 -24.87 8.54 23.37 0.20 -24.67 16 7 H 0.08 3.88 6.67 -2.91 -0.02 3.86 16 8 C 0.03 1.57 5.23 85.25 0.45 2.02 16 9 N -0.83 -44.00 10.83 21.83 0.24 -43.76 16 10 Si 0.98 38.22 29.58 68.60 2.03 40.25 16 11 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 12 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 13 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 14 C 0.30 14.66 7.52 134.05 1.01 15.67 16 15 N -0.73 -29.26 5.56 -343.64 -1.91 -31.17 16 16 C 0.15 4.62 6.06 86.38 0.52 5.15 16 17 C 0.05 1.06 5.79 71.98 0.42 1.48 16 18 O -0.38 -10.51 10.52 -148.98 -1.57 -12.07 16 19 C 0.60 14.14 3.75 113.37 0.43 14.57 16 20 F -0.18 -4.06 16.86 44.97 0.76 -3.31 16 21 F -0.15 -3.82 17.53 44.97 0.79 -3.03 16 22 F -0.17 -3.55 16.86 44.97 0.76 -2.80 16 23 N -0.54 -25.28 9.44 -179.57 -1.70 -26.98 16 24 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 27 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 28 H 0.11 6.16 6.17 -2.91 -0.02 6.15 16 29 H 0.28 13.64 8.30 -92.70 -0.77 12.87 16 30 H 0.40 16.15 6.67 -92.71 -0.62 15.54 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.12 1.85 7.73 -2.39 -0.02 1.83 16 34 H 0.09 1.83 7.73 -2.39 -0.02 1.81 16 Total: -1.00 -61.36 308.39 4.27 -57.09 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.54 Total: 29.15 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 4.33 Total: -3.38 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -3.37 Total: -101.91 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -1.57 Total: -12.07 kcal Atomic # 9 Polarization: -11.44 SS G_CDS: 2.30 Total: -9.13 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -61.36 4.27 -57.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157392479.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.132 kcal (2) G-P(sol) polarization free energy of solvation -61.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds