Wall clock time and date at job start Tue Mar 31 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48498 * 109.47349 * 270.00588 * 3 2 1 5 5 H 1.48501 * 109.46799 * 30.00627 * 3 2 1 6 6 H 1.48503 * 109.47101 * 150.00254 * 3 2 1 7 7 C 1.37878 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46783 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46864 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46813 * 180.02562 * 11 10 9 13 13 C 1.38705 * 119.99401 * 180.02562 * 12 11 10 14 14 C 1.40245 * 119.23440 * 359.97438 * 13 12 11 15 15 C 1.36216 * 119.87598 * 180.02562 * 14 13 12 16 16 C 1.41007 * 118.29150 * 359.97438 * 15 14 13 17 17 C 1.40364 * 121.25677 * 180.02562 * 16 15 14 18 18 C 1.36209 * 119.66607 * 179.97438 * 17 16 15 19 19 C 1.39278 * 120.86396 * 0.02562 * 18 17 16 20 20 C 1.36244 * 121.01313 * 359.97135 * 19 18 17 21 21 Cl 1.73597 * 120.12812 * 180.02562 * 20 19 18 22 22 C 1.40645 * 119.73580 * 0.06406 * 20 19 18 23 23 N 1.31704 * 119.22696 * 180.02562 * 13 12 11 24 24 H 0.97001 * 119.99957 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46748 * 60.00935 * 9 7 2 26 26 H 1.08999 * 109.47083 * 300.00340 * 9 7 2 27 27 H 1.09001 * 109.46912 * 60.00256 * 10 9 7 28 28 H 1.08999 * 109.47305 * 299.99857 * 10 9 7 29 29 H 1.08997 * 109.46821 * 60.00494 * 11 10 9 30 30 H 1.08999 * 109.46928 * 299.99948 * 11 10 9 31 31 H 0.97001 * 120.00131 * 359.97438 * 12 11 10 32 32 H 1.07999 * 120.06448 * 359.97438 * 14 13 12 33 33 H 1.08000 * 120.85265 * 180.02562 * 15 14 13 34 34 H 1.07996 * 120.17139 * 359.97438 * 17 16 15 35 35 H 1.07995 * 119.56655 * 180.02562 * 18 17 16 36 36 H 1.07999 * 119.49482 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9699 -7.4083 -0.0015 14 6 0.5878 -7.6460 -0.0025 15 6 0.1193 -8.9251 -0.0030 16 6 1.0553 -9.9797 -0.0029 17 6 0.6414 -11.3209 -0.0039 18 6 1.5736 -12.3141 -0.0043 19 6 2.9343 -12.0169 -0.0033 20 6 3.3709 -10.7264 -0.0024 21 17 5.0725 -10.3822 -0.0018 22 6 2.4377 -9.6741 -0.0012 23 7 2.8392 -8.3978 -0.0004 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5570 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 3.3860 -5.9233 -0.0002 32 1 -0.1039 -6.8166 -0.0021 33 1 -0.9418 -9.1263 -0.0042 34 1 -0.4108 -11.5642 -0.0042 35 1 1.2533 -13.3455 -0.0055 36 1 3.6543 -12.8219 -0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:07 Heat of formation + Delta-G solvation = 32.536274 kcal Electronic energy + Delta-G solvation = -19071.462174 eV Core-core repulsion = 15966.478730 eV Total energy + Delta-G solvation = -3104.983444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86944 -38.08264 -36.46656 -35.66471 -33.56509 -33.30457 -31.51250 -30.07241 -29.25829 -26.51708 -24.27593 -23.56516 -22.35126 -22.14568 -20.47676 -18.20121 -17.70814 -17.21180 -16.37465 -15.31582 -15.24643 -15.21928 -14.72450 -14.51688 -14.43078 -13.99294 -13.53959 -13.30957 -12.89449 -12.37285 -12.08188 -11.99519 -11.85874 -11.80540 -11.53037 -10.95040 -10.84464 -10.78835 -10.62152 -10.34910 -10.02076 -9.60196 -9.58299 -9.46613 -9.20114 -8.47233 -8.42901 -7.54534 -6.08114 -4.10888 0.29135 0.84341 1.85990 2.14928 2.84411 3.20422 3.27878 3.34489 3.37956 4.03857 4.33263 4.40230 4.50626 4.69824 4.80645 4.88437 4.97829 5.22663 5.28324 5.35598 5.45548 5.57261 5.74371 5.77243 5.81843 5.94971 6.03765 6.14506 6.25738 6.46945 6.50583 6.62783 6.87952 7.05531 7.54756 7.63639 7.66327 7.90130 8.16964 8.31892 8.95460 9.53913 11.03222 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031170 B = 0.002661 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.089526 B =10517.996470 C =11390.336727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.119 3.881 12 N -0.707 5.707 13 C 0.437 3.563 14 C -0.207 4.207 15 C -0.025 4.025 16 C -0.151 4.151 17 C -0.067 4.067 18 C -0.145 4.145 19 C -0.081 4.081 20 C -0.036 4.036 21 Cl -0.056 7.056 22 C 0.194 3.806 23 N -0.551 5.551 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.407 0.593 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -24.717 -0.008 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.337 5.337 13 C 0.187 3.813 14 C -0.230 4.230 15 C -0.050 4.050 16 C -0.156 4.156 17 C -0.085 4.085 18 C -0.165 4.165 19 C -0.102 4.102 20 C -0.065 4.065 21 Cl -0.027 7.027 22 C 0.069 3.931 23 N -0.272 5.272 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.649 -24.228 -0.002 24.284 hybrid contribution 0.051 0.947 -0.011 0.949 sum 1.700 -23.281 -0.013 23.343 Atomic orbital electron populations 1.69952 1.06066 1.26769 1.50609 1.25017 0.94869 0.99343 0.95167 0.86574 0.79848 0.83321 0.78161 1.20608 1.21169 1.19847 1.21199 0.93078 0.90891 1.50961 0.92594 1.19026 0.93776 0.90875 0.97556 1.21882 0.99877 0.92794 1.01361 1.21817 0.92022 0.85399 1.01226 1.45020 1.10456 1.01372 1.76892 1.18640 0.88687 0.86284 0.87643 1.21505 0.95065 0.98666 1.07786 1.21241 0.99467 0.91294 0.92986 1.18548 0.93228 0.94789 1.09015 1.20986 0.99866 0.91154 0.96544 1.20631 0.91938 0.99695 1.04187 1.20753 0.96621 0.94509 0.98300 1.20376 0.85137 0.92965 1.07987 1.98359 1.11765 1.95819 1.96744 1.18083 0.89892 0.89910 0.95246 1.67623 1.36386 0.98019 1.25190 0.92895 0.96277 0.96272 0.92449 0.92462 0.91821 0.91825 0.75701 0.84041 0.84038 0.85213 0.85219 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.82 4.87 -4.04 -0.02 1.80 16 12 N -0.71 -10.32 5.72 -60.36 -0.35 -10.67 16 13 C 0.44 6.41 7.63 -155.48 -1.19 5.22 16 14 C -0.21 -2.57 9.23 -39.56 -0.36 -2.93 16 15 C -0.02 -0.26 9.88 -39.26 -0.39 -0.65 16 16 C -0.15 -1.77 5.74 -106.78 -0.61 -2.39 16 17 C -0.07 -0.59 9.77 -39.51 -0.39 -0.98 16 18 C -0.15 -1.20 9.95 -39.93 -0.40 -1.60 16 19 C -0.08 -0.79 9.72 -39.91 -0.39 -1.18 16 20 C -0.04 -0.46 6.33 -39.39 -0.25 -0.70 16 21 Cl -0.06 -0.71 28.52 -51.86 -1.48 -2.19 16 22 C 0.19 2.73 6.60 -84.83 -0.56 2.17 16 23 N -0.55 -8.56 9.84 -10.19 -0.10 -8.66 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 30 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 31 H 0.41 5.84 8.59 -40.82 -0.35 5.49 16 32 H 0.14 1.58 6.62 -52.49 -0.35 1.23 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -30.68 324.59 -11.00 -41.68 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.44 Total: 0.44 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -5.24 Total: -16.29 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.29 Total: -44.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.68 -11.00 -41.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.215 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds