Wall clock time and date at job start Tue Mar 31 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48498 * 109.47349 * 270.00588 * 3 2 1 5 5 H 1.48501 * 109.46799 * 30.00627 * 3 2 1 6 6 H 1.48503 * 109.47101 * 150.00254 * 3 2 1 7 7 C 1.37878 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46783 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46864 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46813 * 180.02562 * 11 10 9 13 13 C 1.38705 * 119.99401 * 180.02562 * 12 11 10 14 14 C 1.40245 * 119.23440 * 359.97438 * 13 12 11 15 15 C 1.36216 * 119.87598 * 180.02562 * 14 13 12 16 16 C 1.41007 * 118.29150 * 359.97438 * 15 14 13 17 17 C 1.40364 * 121.25677 * 180.02562 * 16 15 14 18 18 C 1.36209 * 119.66607 * 179.97438 * 17 16 15 19 19 C 1.39278 * 120.86396 * 0.02562 * 18 17 16 20 20 C 1.36244 * 121.01313 * 359.97135 * 19 18 17 21 21 Cl 1.73597 * 120.12812 * 180.02562 * 20 19 18 22 22 C 1.40645 * 119.73580 * 0.06406 * 20 19 18 23 23 N 1.31704 * 119.22696 * 180.02562 * 13 12 11 24 24 H 0.97001 * 119.99957 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46748 * 60.00935 * 9 7 2 26 26 H 1.08999 * 109.47083 * 300.00340 * 9 7 2 27 27 H 1.09001 * 109.46912 * 60.00256 * 10 9 7 28 28 H 1.08999 * 109.47305 * 299.99857 * 10 9 7 29 29 H 1.08997 * 109.46821 * 60.00494 * 11 10 9 30 30 H 1.08999 * 109.46928 * 299.99948 * 11 10 9 31 31 H 0.97001 * 120.00131 * 359.97438 * 12 11 10 32 32 H 1.07999 * 120.06448 * 359.97438 * 14 13 12 33 33 H 1.08000 * 120.85265 * 180.02562 * 15 14 13 34 34 H 1.07996 * 120.17139 * 359.97438 * 17 16 15 35 35 H 1.07995 * 119.56655 * 180.02562 * 18 17 16 36 36 H 1.07999 * 119.49482 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9699 -7.4083 -0.0015 14 6 0.5878 -7.6460 -0.0025 15 6 0.1193 -8.9251 -0.0030 16 6 1.0553 -9.9797 -0.0029 17 6 0.6414 -11.3209 -0.0039 18 6 1.5736 -12.3141 -0.0043 19 6 2.9343 -12.0169 -0.0033 20 6 3.3709 -10.7264 -0.0024 21 17 5.0725 -10.3822 -0.0018 22 6 2.4377 -9.6741 -0.0012 23 7 2.8392 -8.3978 -0.0004 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5570 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 3.3860 -5.9233 -0.0002 32 1 -0.1039 -6.8166 -0.0021 33 1 -0.9418 -9.1263 -0.0042 34 1 -0.4108 -11.5642 -0.0042 35 1 1.2533 -13.3455 -0.0055 36 1 3.6543 -12.8219 -0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:06 Heat of formation + Delta-G solvation = 15.888734 kcal Electronic energy + Delta-G solvation = -19072.184066 eV Core-core repulsion = 15966.478730 eV Total energy + Delta-G solvation = -3105.705336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.75108 -39.03092 -37.41738 -36.85016 -35.27614 -34.24077 -33.15346 -30.88270 -30.38010 -28.14442 -25.33659 -24.90568 -23.46476 -23.00257 -22.08709 -19.11687 -18.73371 -18.34315 -18.09837 -16.56897 -16.47818 -16.23011 -16.07908 -15.57890 -15.54719 -15.05121 -14.37707 -14.28175 -14.12913 -14.08068 -13.69286 -13.29055 -12.80135 -12.79679 -12.66206 -12.47464 -12.44928 -12.34785 -11.73885 -11.69327 -11.48737 -11.23059 -11.21345 -10.63474 -10.55395 -10.44121 -9.30270 -8.54083 -8.21340 -6.31352 -0.51783 -0.02486 1.01061 1.28285 1.40564 1.40806 1.51873 2.03205 2.11595 2.41254 3.12760 3.14206 3.46962 3.76720 3.87029 3.95379 4.12994 4.14448 4.21039 4.31448 4.44663 4.56003 4.59990 4.88688 4.94163 4.96308 5.00978 5.04304 5.14650 5.28969 5.40183 5.48951 5.50915 5.71670 5.83676 5.85495 5.96641 6.23892 6.54635 6.85138 7.17261 7.37816 8.90338 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031170 B = 0.002661 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.089526 B =10517.996470 C =11390.336727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.106 4.106 11 C 0.137 3.863 12 N -0.714 5.714 13 C 0.418 3.582 14 C -0.228 4.228 15 C -0.010 4.010 16 C -0.164 4.164 17 C -0.060 4.060 18 C -0.139 4.139 19 C -0.071 4.071 20 C -0.068 4.068 21 Cl -0.072 7.072 22 C 0.161 3.839 23 N -0.580 5.580 24 H 0.264 0.736 25 H 0.000 1.000 26 H 0.000 1.000 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.404 0.596 32 H 0.150 0.850 33 H 0.182 0.818 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -26.856 -0.018 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.144 4.144 11 C 0.013 3.987 12 N -0.345 5.345 13 C 0.170 3.830 14 C -0.251 4.251 15 C -0.035 4.035 16 C -0.169 4.169 17 C -0.079 4.079 18 C -0.157 4.157 19 C -0.091 4.091 20 C -0.096 4.096 21 Cl -0.043 7.043 22 C 0.037 3.963 23 N -0.301 5.301 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.240 0.760 32 H 0.167 0.833 33 H 0.199 0.801 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.819 -26.412 -0.013 26.424 hybrid contribution 0.274 1.400 -0.009 1.426 sum 1.093 -25.012 -0.021 25.036 Atomic orbital electron populations 1.70069 1.07600 1.27790 1.51594 1.25908 0.95760 1.03140 0.94791 0.85508 0.78681 0.78787 0.78448 1.19861 1.20712 1.19006 1.21678 0.93531 0.92456 1.50601 0.92380 1.18905 0.94217 0.92186 0.95621 1.21591 0.98705 0.92740 1.01368 1.21458 0.91518 0.84064 1.01622 1.44806 1.09993 1.01457 1.78212 1.18856 0.89755 0.85854 0.88538 1.21645 0.94132 1.00018 1.09293 1.21702 1.01223 0.90147 0.90388 1.18902 0.92394 0.96668 1.08919 1.21438 1.02029 0.89689 0.94704 1.21122 0.90903 1.01580 1.02145 1.21167 0.98169 0.93822 0.95936 1.20643 0.84421 0.93980 1.10605 1.98340 1.12975 1.96019 1.96998 1.18500 0.91613 0.89617 0.96584 1.67525 1.37526 0.99012 1.26074 0.92715 0.98161 0.98159 0.92427 0.92416 0.91453 0.91464 0.76019 0.83266 0.80076 0.81445 0.81357 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.11 -4.05 5.27 30.60 0.16 -3.89 16 11 C 0.14 4.27 4.87 86.38 0.42 4.69 16 12 N -0.71 -21.41 5.72 -344.87 -1.97 -23.39 16 13 C 0.42 12.49 7.63 133.64 1.02 13.51 16 14 C -0.23 -5.50 9.23 22.29 0.21 -5.30 16 15 C -0.01 -0.18 9.88 22.48 0.22 0.04 16 16 C -0.16 -3.50 5.74 -21.26 -0.12 -3.62 16 17 C -0.06 -0.82 9.77 22.31 0.22 -0.60 16 18 C -0.14 -1.70 9.95 22.05 0.22 -1.48 16 19 C -0.07 -1.20 9.72 22.06 0.21 -0.98 16 20 C -0.07 -1.68 6.33 22.39 0.14 -1.54 16 21 Cl -0.07 -1.87 28.52 -2.72 -0.08 -1.95 16 22 C 0.16 4.47 6.60 40.25 0.27 4.74 16 23 N -0.58 -18.47 9.84 -186.15 -1.83 -20.30 16 24 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.07 2.04 7.90 -2.39 -0.02 2.02 16 30 H 0.07 2.04 7.90 -2.39 -0.02 2.02 16 31 H 0.40 12.12 8.59 -92.71 -0.80 11.33 16 32 H 0.15 3.23 6.62 -2.91 -0.02 3.21 16 33 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 35 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -68.52 324.59 2.54 -65.98 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.30 Total: 11.22 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 3.81 Total: -22.31 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -3.52 Total: -98.69 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -68.52 2.54 -65.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.864 kcal (2) G-P(sol) polarization free energy of solvation -68.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds