Wall clock time and date at job start Tue Mar 31 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99652 * 2 1 4 4 H 1.48500 * 109.46710 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47158 * 299.99767 * 3 2 1 6 6 H 1.48502 * 109.46769 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.38445 * 119.99696 * 179.72345 * 12 11 10 14 14 N 1.31950 * 120.14872 * 0.27874 * 13 12 11 15 15 C 1.32651 * 122.64303 * 179.97438 * 14 13 12 16 16 C 1.36075 * 121.98748 * 0.02562 * 15 14 13 17 17 C 1.40835 * 118.85255 * 0.02562 * 16 15 14 18 18 C 1.40294 * 122.16994 * 179.97438 * 17 16 15 19 19 Cl 1.73598 * 120.27254 * 0.04280 * 18 17 16 20 20 C 1.36393 * 119.45224 * 180.02562 * 18 17 16 21 21 C 1.39264 * 120.95787 * 359.97438 * 20 18 17 22 22 C 1.36297 * 121.06162 * 0.02562 * 21 20 18 23 23 C 1.40106 * 119.56217 * 359.72449 * 22 21 20 24 24 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 26 26 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 27 27 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 28 28 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 31 31 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 32 32 H 1.08001 * 119.00871 * 179.97438 * 15 14 13 33 33 H 1.07995 * 120.57507 * 180.02562 * 16 15 14 34 34 H 1.07995 * 119.51836 * 179.97438 * 20 18 17 35 35 H 1.07999 * 119.46570 * 180.02562 * 21 20 18 36 36 H 1.07997 * 120.22054 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9712 -7.4058 0.0068 14 7 0.6745 -7.6503 0.0077 15 6 0.1784 -8.8805 0.0130 16 6 0.9792 -9.9807 0.0185 17 6 2.3764 -9.8042 0.0190 18 6 3.2663 -10.8888 0.0249 19 17 2.6623 -12.5163 0.0309 20 6 4.6098 -10.6540 0.0256 21 6 5.1099 -9.3543 0.0199 22 6 4.2728 -8.2787 0.0141 23 6 2.8865 -8.4818 0.0078 24 1 -0.4851 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8894 29 1 0.8536 -5.0451 -0.8886 30 1 0.8542 -5.0445 0.8913 31 1 3.3863 -5.9232 0.0002 32 1 -0.8935 -9.0130 0.0139 33 1 0.5507 -10.9720 0.0223 34 1 5.2958 -11.4881 0.0306 35 1 6.1782 -9.1961 0.0202 36 1 4.6753 -7.2766 0.0093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:18 Heat of formation + Delta-G solvation = 32.819352 kcal Electronic energy + Delta-G solvation = -19245.738580 eV Core-core repulsion = 16140.767411 eV Total energy + Delta-G solvation = -3104.971169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00125 -37.93071 -36.60195 -36.33958 -33.88172 -32.26015 -31.51994 -30.68391 -29.02370 -26.50821 -24.10046 -23.99104 -22.82917 -21.47542 -20.47148 -18.38295 -17.90400 -16.80172 -16.34003 -15.87443 -15.25638 -15.18739 -14.87143 -14.49969 -14.31233 -13.97222 -13.76591 -13.14049 -13.09967 -12.36057 -12.26216 -11.97666 -11.92410 -11.64497 -11.60977 -11.05706 -10.99006 -10.76074 -10.57259 -10.46474 -9.84306 -9.57321 -9.39897 -9.33310 -9.13902 -8.97864 -8.40040 -7.38857 -6.04478 -4.07584 0.30081 0.73402 1.81903 1.84234 2.88576 3.20247 3.28126 3.35843 3.39265 4.00715 4.33780 4.41640 4.45385 4.60569 4.69397 4.79423 4.98890 5.25565 5.31522 5.39123 5.54133 5.65938 5.70834 5.75922 5.79532 6.01229 6.12243 6.15872 6.31886 6.46745 6.56829 6.70312 6.91852 7.19025 7.39040 7.60804 7.72999 7.94254 8.28839 8.35283 8.99243 9.56857 11.06816 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038095 B = 0.002660 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.834567 B =10525.620108 C =11234.681764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.126 3.874 12 N -0.701 5.701 13 C 0.448 3.552 14 N -0.558 5.558 15 C 0.157 3.843 16 C -0.245 4.245 17 C 0.026 3.974 18 C -0.047 4.047 19 Cl -0.064 7.064 20 C -0.077 4.077 21 C -0.137 4.137 22 C -0.064 4.064 23 C -0.145 4.145 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.406 0.594 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.888 -23.597 0.049 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.161 4.161 11 C 0.003 3.997 12 N -0.330 5.330 13 C 0.198 3.802 14 N -0.279 5.279 15 C 0.010 3.990 16 C -0.269 4.269 17 C 0.020 3.980 18 C -0.074 4.074 19 Cl -0.035 7.035 20 C -0.097 4.097 21 C -0.156 4.156 22 C -0.084 4.084 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.243 0.757 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.886 -22.789 0.044 23.807 hybrid contribution 1.278 0.132 0.006 1.284 sum 8.163 -22.657 0.050 24.082 Atomic orbital electron populations 1.69970 1.06053 1.26612 1.50612 1.25029 0.94855 0.99313 0.95260 0.86534 0.80045 0.83770 0.77630 1.19771 1.20974 1.20978 1.21235 0.93013 0.90937 1.50869 0.92630 1.19015 0.93793 0.90745 0.97697 1.21920 0.99892 0.93501 1.00811 1.21686 0.91499 0.84244 1.02263 1.44983 1.09844 1.02061 1.76154 1.18531 0.88658 0.85240 0.87759 1.67169 1.12439 1.24649 1.23688 1.21899 1.00053 0.86164 0.90835 1.21458 0.92048 1.00767 1.12588 1.17609 0.93863 0.90649 0.95844 1.20465 0.93449 0.85281 1.08195 1.98354 1.88544 1.19663 1.96968 1.20856 0.93373 0.98046 0.97434 1.20675 1.00324 0.91336 1.03248 1.20935 0.91753 0.99678 0.96013 1.18341 0.94178 0.92510 1.10090 0.92955 0.96228 0.96220 0.92793 0.92780 0.91529 0.91531 0.75652 0.82972 0.84732 0.84845 0.84844 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.49 16 11 C 0.13 2.12 5.70 -4.04 -0.02 2.09 16 12 N -0.70 -9.84 5.63 -60.08 -0.34 -10.18 16 13 C 0.45 6.48 7.53 -155.13 -1.17 5.32 16 14 N -0.56 -8.61 9.53 -12.45 -0.12 -8.73 16 15 C 0.16 2.01 11.06 -17.98 -0.20 1.81 16 16 C -0.24 -2.93 9.51 -39.38 -0.37 -3.30 16 17 C 0.03 0.32 5.75 -106.80 -0.61 -0.29 16 18 C -0.05 -0.50 6.32 -39.47 -0.25 -0.75 16 19 Cl -0.06 -0.62 27.64 -51.86 -1.43 -2.05 16 20 C -0.08 -0.69 9.73 -39.87 -0.39 -1.08 16 21 C -0.14 -1.17 9.95 -39.90 -0.40 -1.57 16 22 C -0.06 -0.64 9.52 -39.58 -0.38 -1.02 16 23 C -0.15 -1.85 5.75 -106.71 -0.61 -2.46 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.41 4.71 6.63 -40.82 -0.27 4.44 16 32 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.13 1.37 7.12 -52.49 -0.37 1.00 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.13 1.05 6.51 -52.49 -0.34 0.71 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -31.00 321.91 -10.75 -41.75 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.33 Total: 0.36 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -5.09 Total: -16.46 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.28 Total: -44.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.43 Total: -2.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.00 -10.75 -41.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.573 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds