Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99652 * 2 1 4 4 H 1.48500 * 109.46710 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47158 * 299.99767 * 3 2 1 6 6 H 1.48502 * 109.46769 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.38445 * 119.99696 * 179.72345 * 12 11 10 14 14 N 1.31950 * 120.14872 * 0.27874 * 13 12 11 15 15 C 1.32651 * 122.64303 * 179.97438 * 14 13 12 16 16 C 1.36075 * 121.98748 * 0.02562 * 15 14 13 17 17 C 1.40835 * 118.85255 * 0.02562 * 16 15 14 18 18 C 1.40294 * 122.16994 * 179.97438 * 17 16 15 19 19 Cl 1.73598 * 120.27254 * 0.04280 * 18 17 16 20 20 C 1.36393 * 119.45224 * 180.02562 * 18 17 16 21 21 C 1.39264 * 120.95787 * 359.97438 * 20 18 17 22 22 C 1.36297 * 121.06162 * 0.02562 * 21 20 18 23 23 C 1.40106 * 119.56217 * 359.72449 * 22 21 20 24 24 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 26 26 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 27 27 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 28 28 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 31 31 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 32 32 H 1.08001 * 119.00871 * 179.97438 * 15 14 13 33 33 H 1.07995 * 120.57507 * 180.02562 * 16 15 14 34 34 H 1.07995 * 119.51836 * 179.97438 * 20 18 17 35 35 H 1.07999 * 119.46570 * 180.02562 * 21 20 18 36 36 H 1.07997 * 120.22054 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9712 -7.4058 0.0068 14 7 0.6745 -7.6503 0.0077 15 6 0.1784 -8.8805 0.0130 16 6 0.9792 -9.9807 0.0185 17 6 2.3764 -9.8042 0.0190 18 6 3.2663 -10.8888 0.0249 19 17 2.6623 -12.5163 0.0309 20 6 4.6098 -10.6540 0.0256 21 6 5.1099 -9.3543 0.0199 22 6 4.2728 -8.2787 0.0141 23 6 2.8865 -8.4818 0.0078 24 1 -0.4851 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8894 29 1 0.8536 -5.0451 -0.8886 30 1 0.8542 -5.0445 0.8913 31 1 3.3863 -5.9232 0.0002 32 1 -0.8935 -9.0130 0.0139 33 1 0.5507 -10.9720 0.0223 34 1 5.2958 -11.4881 0.0306 35 1 6.1782 -9.1961 0.0202 36 1 4.6753 -7.2766 0.0093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = 16.375777 kcal Electronic energy + Delta-G solvation = -19246.451627 eV Core-core repulsion = 16140.767411 eV Total energy + Delta-G solvation = -3105.684216 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90509 -38.83986 -37.54102 -37.37014 -35.62244 -33.81042 -32.48079 -31.85524 -30.09226 -28.18181 -25.39743 -24.86466 -24.18857 -22.45138 -22.13704 -19.32675 -18.88988 -18.37638 -17.66858 -16.82508 -16.51019 -16.48798 -16.18994 -15.66475 -15.48316 -15.05491 -14.71686 -14.26268 -14.20536 -13.89980 -13.66546 -13.47296 -13.04222 -12.80425 -12.56535 -12.49363 -12.43410 -12.26755 -11.84710 -11.82187 -11.49163 -11.31526 -11.17423 -10.55899 -10.38170 -10.28505 -9.87272 -8.37292 -8.19580 -6.30825 -0.53942 -0.11812 0.90627 1.06950 1.41641 1.41791 1.54862 2.07482 2.11796 2.42375 3.06963 3.14331 3.47383 3.62737 3.82449 3.88126 3.93406 4.20014 4.24748 4.25517 4.48645 4.57748 4.60182 4.75897 4.80618 4.98043 5.04509 5.06889 5.17116 5.23939 5.33160 5.47490 5.53245 5.71779 5.71820 5.84685 6.05903 6.23785 6.38084 6.86835 7.29779 7.38832 8.92708 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038095 B = 0.002660 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.834567 B =10525.620108 C =11234.681764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.104 4.104 11 C 0.147 3.853 12 N -0.698 5.698 13 C 0.430 3.570 14 N -0.592 5.592 15 C 0.134 3.866 16 C -0.236 4.236 17 C 0.003 3.997 18 C -0.060 4.060 19 Cl -0.058 7.058 20 C -0.071 4.071 21 C -0.123 4.123 22 C -0.075 4.075 23 C -0.155 4.155 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.418 0.582 32 H 0.170 0.830 33 H 0.149 0.851 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.856 -24.621 0.055 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.142 4.142 11 C 0.022 3.978 12 N -0.331 5.331 13 C 0.182 3.818 14 N -0.314 5.314 15 C -0.011 4.011 16 C -0.259 4.259 17 C -0.002 4.002 18 C -0.087 4.087 19 Cl -0.029 7.029 20 C -0.090 4.090 21 C -0.141 4.141 22 C -0.095 4.095 23 C -0.160 4.160 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.258 0.742 32 H 0.188 0.812 33 H 0.167 0.833 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.868 -23.865 0.050 25.824 hybrid contribution 0.392 0.281 0.005 0.483 sum 10.260 -23.583 0.055 25.719 Atomic orbital electron populations 1.70113 1.07904 1.27724 1.51777 1.26012 0.95744 1.03507 0.94824 0.85383 0.79204 0.78722 0.77635 1.18242 1.20567 1.20578 1.21709 0.93705 0.92065 1.50302 0.91658 1.18915 0.94371 0.92800 0.95107 1.21615 0.98549 0.92201 1.01843 1.21160 0.91386 0.84436 1.00773 1.44613 1.09802 1.01295 1.77375 1.18700 0.88980 0.85560 0.88585 1.67107 1.13496 1.26188 1.24626 1.22203 1.01172 0.85794 0.91946 1.21668 0.92242 1.01076 1.10937 1.17868 0.94349 0.91321 0.96685 1.20602 0.94064 0.85238 1.08817 1.98355 1.88628 1.18941 1.96978 1.21282 0.93031 0.99316 0.95408 1.21124 1.01921 0.90500 1.00545 1.21221 0.90698 1.01374 0.96216 1.18466 0.95234 0.91954 1.10394 0.92807 0.98895 0.98890 0.91640 0.91625 0.93150 0.93152 0.74224 0.81247 0.83305 0.82087 0.81315 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.10 -3.98 5.27 30.59 0.16 -3.82 16 11 C 0.15 5.08 5.70 86.38 0.49 5.57 16 12 N -0.70 -19.50 5.63 -344.00 -1.94 -21.44 16 13 C 0.43 12.55 7.53 133.92 1.01 13.56 16 14 N -0.59 -18.88 9.53 -193.30 -1.84 -20.73 16 15 C 0.13 3.50 11.06 84.07 0.93 4.43 16 16 C -0.24 -5.57 9.51 22.40 0.21 -5.36 16 17 C 0.00 0.08 5.75 -21.28 -0.12 -0.04 16 18 C -0.06 -1.17 6.32 22.34 0.14 -1.03 16 19 Cl -0.06 -1.01 27.64 -2.72 -0.08 -1.08 16 20 C -0.07 -1.03 9.73 22.09 0.21 -0.81 16 21 C -0.12 -1.62 9.95 22.06 0.22 -1.40 16 22 C -0.08 -1.33 9.52 22.27 0.21 -1.11 16 23 C -0.15 -3.79 5.75 -21.21 -0.12 -3.91 16 24 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.42 9.18 6.63 -92.71 -0.61 8.56 16 32 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.15 2.93 7.12 -2.91 -0.02 2.91 16 34 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.15 1.97 6.51 -2.91 -0.02 1.95 16 Total: -1.00 -68.37 321.91 3.13 -65.24 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.49 Total: 10.90 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.19 Total: -21.92 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -3.50 Total: -98.80 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.08 kcal Total: -68.37 3.13 -65.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.612 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds