Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99840 * 2 1 4 4 H 1.48505 * 109.47424 * 240.00059 * 3 2 1 5 5 H 1.48494 * 109.47592 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47245 * 120.00690 * 3 2 1 7 7 C 1.37880 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00056 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46782 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46726 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.38417 * 120.00148 * 180.02562 * 12 11 10 14 14 N 1.31969 * 120.14558 * 353.42775 * 13 12 11 15 15 C 1.32653 * 122.63682 * 179.97438 * 14 13 12 16 16 C 1.36067 * 121.99302 * 0.02562 * 15 14 13 17 17 C 1.40866 * 118.85054 * 359.97393 * 16 15 14 18 18 C 1.40172 * 122.17135 * 180.02562 * 17 16 15 19 19 C 1.36309 * 119.50330 * 179.97438 * 18 17 16 20 20 C 1.39236 * 120.99683 * 0.02562 * 19 18 17 21 21 C 1.36445 * 121.02306 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.24589 * 180.02562 * 21 20 19 23 23 C 1.40202 * 119.50908 * 359.97438 * 21 20 19 24 24 H 0.97001 * 120.00190 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47142 * 60.00302 * 9 7 2 26 26 H 1.08995 * 109.47078 * 299.99706 * 9 7 2 27 27 H 1.08999 * 109.46764 * 60.00402 * 10 9 7 28 28 H 1.08998 * 109.47042 * 300.00303 * 10 9 7 29 29 H 1.08999 * 109.46996 * 60.00758 * 11 10 9 30 30 H 1.08998 * 109.47782 * 300.00063 * 11 10 9 31 31 H 0.97003 * 119.99788 * 0.02562 * 12 11 10 32 32 H 1.08001 * 119.00588 * 179.97438 * 15 14 13 33 33 H 1.07997 * 120.57271 * 180.02562 * 16 15 14 34 34 H 1.08003 * 120.24693 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.49823 * 179.97438 * 19 18 17 36 36 H 1.07990 * 119.48621 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9708 -7.4057 -0.0019 14 7 0.6811 -7.6526 0.1292 15 6 0.1853 -8.8830 0.1352 16 6 0.9789 -9.9807 0.0062 17 6 2.3686 -9.8015 -0.1384 18 6 3.2501 -10.8825 -0.2768 19 6 4.5856 -10.6464 -0.4139 20 6 5.0875 -9.3476 -0.4179 21 6 4.2577 -8.2727 -0.2843 22 17 4.9051 -6.6620 -0.2927 23 6 2.8783 -8.4787 -0.1413 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 0.8527 -5.0447 -0.8905 30 1 0.8545 -5.0450 0.8894 31 1 3.3859 -5.9234 -0.0021 32 1 -0.8805 -9.0176 0.2466 33 1 0.5507 -10.9721 0.0138 34 1 2.8739 -11.8949 -0.2758 35 1 5.2648 -11.4794 -0.5201 36 1 6.1498 -9.1886 -0.5284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = 51.409327 kcal Electronic energy + Delta-G solvation = -19624.681302 eV Core-core repulsion = 16520.516255 eV Total energy + Delta-G solvation = -3104.165047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01062 -37.82503 -37.53415 -35.88853 -33.78467 -32.28276 -31.51747 -30.73425 -28.93061 -26.45123 -24.09231 -24.00304 -22.74020 -21.66145 -20.39054 -18.35763 -17.81501 -16.75766 -16.53911 -16.14015 -15.18076 -15.08220 -14.96937 -14.48340 -14.27235 -14.05942 -13.90384 -13.05554 -13.03993 -12.41193 -12.21649 -12.19258 -11.79981 -11.69021 -11.63240 -10.95479 -10.90492 -10.59402 -10.43415 -10.36973 -9.78311 -9.51440 -9.39843 -9.26516 -9.11150 -8.99654 -8.35022 -7.30983 -5.99934 -4.02835 0.29188 0.73651 1.56088 1.81015 2.89706 3.33245 3.37561 3.38686 3.42726 4.02327 4.36955 4.42169 4.45817 4.56039 4.82449 4.89884 4.96615 5.15053 5.35638 5.43215 5.57218 5.67567 5.75293 5.79938 5.85113 5.94428 6.17558 6.23932 6.33742 6.53294 6.65456 6.77400 6.99417 7.32071 7.53483 7.65707 7.79324 7.99086 8.37204 8.40749 9.03386 9.60995 11.11336 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.003449 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.909411 B = 8115.353084 C = 9138.652023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.027 3.973 10 C -0.122 4.122 11 C 0.117 3.883 12 N -0.705 5.705 13 C 0.445 3.555 14 N -0.561 5.561 15 C 0.159 3.841 16 C -0.253 4.253 17 C 0.031 3.969 18 C -0.119 4.119 19 C -0.083 4.083 20 C -0.132 4.132 21 C 0.004 3.996 22 Cl -0.028 7.028 23 C -0.152 4.152 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.400 0.600 32 H 0.152 0.848 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 -24.196 -0.670 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.353 5.353 13 C 0.195 3.805 14 N -0.282 5.282 15 C 0.012 3.988 16 C -0.277 4.277 17 C 0.026 3.974 18 C -0.137 4.137 19 C -0.102 4.102 20 C -0.151 4.151 21 C -0.025 4.025 22 Cl 0.001 6.999 23 C -0.158 4.158 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.260 0.740 32 H 0.169 0.831 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.406 -23.035 -0.577 24.203 hybrid contribution 1.316 0.490 -0.084 1.407 sum 8.722 -22.545 -0.661 24.182 Atomic orbital electron populations 1.69956 1.06028 1.26766 1.50534 1.25019 0.94861 0.99239 0.95280 0.86648 0.79579 0.83116 0.78595 1.20250 1.21240 1.20252 1.21178 0.92949 0.91007 1.50999 0.92777 1.19006 0.93759 0.90660 0.97675 1.21889 0.99874 0.93657 1.00591 1.21673 0.91977 0.84929 1.02047 1.47275 1.12228 1.01726 1.74105 1.18712 0.88664 0.85666 0.87438 1.67264 1.12457 1.24451 1.24055 1.21958 0.99971 0.86448 0.90458 1.21366 0.92184 1.00461 1.13734 1.17854 0.94348 0.90762 0.94424 1.21023 0.93060 0.98471 1.01177 1.20842 0.95721 0.95998 0.97685 1.20657 1.00065 0.91201 1.03181 1.20620 0.92635 0.85725 1.03498 1.98172 1.82447 1.22635 1.96654 1.18256 0.91799 0.94415 1.11364 0.92883 0.96225 0.96187 0.93017 0.93034 0.91819 0.91552 0.74033 0.83063 0.84817 0.84610 0.84801 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.12 -2.57 5.27 -26.73 -0.14 -2.71 16 11 C 0.12 2.22 5.71 -4.04 -0.02 2.20 16 12 N -0.70 -11.95 5.45 -60.10 -0.33 -12.28 16 13 C 0.45 7.26 7.52 -155.16 -1.17 6.09 16 14 N -0.56 -9.16 9.54 -12.47 -0.12 -9.28 16 15 C 0.16 2.03 11.06 -17.98 -0.20 1.84 16 16 C -0.25 -2.79 9.87 -39.37 -0.39 -3.18 16 17 C 0.03 0.38 5.75 -106.83 -0.61 -0.24 16 18 C -0.12 -1.05 9.81 -39.55 -0.39 -1.44 16 19 C -0.08 -0.66 9.95 -39.91 -0.40 -1.05 16 20 C -0.13 -1.24 9.73 -39.86 -0.39 -1.63 16 21 C 0.00 0.04 6.32 -39.49 -0.25 -0.21 16 22 Cl -0.03 -0.35 24.47 -51.86 -1.27 -1.62 16 23 C -0.15 -2.13 5.76 -106.68 -0.61 -2.74 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.40 6.30 3.12 -40.82 -0.13 6.18 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -32.08 318.20 -10.64 -42.72 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.32 Total: 1.47 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -5.12 Total: -16.23 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.29 Total: -47.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.27 Total: -1.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.08 -10.64 -42.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.127 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds