Wall clock time and date at job start Tue Mar 31 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99840 * 2 1 4 4 H 1.48505 * 109.47424 * 240.00059 * 3 2 1 5 5 H 1.48494 * 109.47592 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47245 * 120.00690 * 3 2 1 7 7 C 1.37880 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00056 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46782 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46726 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.38417 * 120.00148 * 180.02562 * 12 11 10 14 14 N 1.31969 * 120.14558 * 353.42775 * 13 12 11 15 15 C 1.32653 * 122.63682 * 179.97438 * 14 13 12 16 16 C 1.36067 * 121.99302 * 0.02562 * 15 14 13 17 17 C 1.40866 * 118.85054 * 359.97393 * 16 15 14 18 18 C 1.40172 * 122.17135 * 180.02562 * 17 16 15 19 19 C 1.36309 * 119.50330 * 179.97438 * 18 17 16 20 20 C 1.39236 * 120.99683 * 0.02562 * 19 18 17 21 21 C 1.36445 * 121.02306 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.24589 * 180.02562 * 21 20 19 23 23 C 1.40202 * 119.50908 * 359.97438 * 21 20 19 24 24 H 0.97001 * 120.00190 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47142 * 60.00302 * 9 7 2 26 26 H 1.08995 * 109.47078 * 299.99706 * 9 7 2 27 27 H 1.08999 * 109.46764 * 60.00402 * 10 9 7 28 28 H 1.08998 * 109.47042 * 300.00303 * 10 9 7 29 29 H 1.08999 * 109.46996 * 60.00758 * 11 10 9 30 30 H 1.08998 * 109.47782 * 300.00063 * 11 10 9 31 31 H 0.97003 * 119.99788 * 0.02562 * 12 11 10 32 32 H 1.08001 * 119.00588 * 179.97438 * 15 14 13 33 33 H 1.07997 * 120.57271 * 180.02562 * 16 15 14 34 34 H 1.08003 * 120.24693 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.49823 * 179.97438 * 19 18 17 36 36 H 1.07990 * 119.48621 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9708 -7.4057 -0.0019 14 7 0.6811 -7.6526 0.1292 15 6 0.1853 -8.8830 0.1352 16 6 0.9789 -9.9807 0.0062 17 6 2.3686 -9.8015 -0.1384 18 6 3.2501 -10.8825 -0.2768 19 6 4.5856 -10.6464 -0.4139 20 6 5.0875 -9.3476 -0.4179 21 6 4.2577 -8.2727 -0.2843 22 17 4.9051 -6.6620 -0.2927 23 6 2.8783 -8.4787 -0.1413 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 0.8527 -5.0447 -0.8905 30 1 0.8545 -5.0450 0.8894 31 1 3.3859 -5.9234 -0.0021 32 1 -0.8805 -9.0176 0.2466 33 1 0.5507 -10.9721 0.0138 34 1 2.8739 -11.8949 -0.2758 35 1 5.2648 -11.4794 -0.5201 36 1 6.1498 -9.1886 -0.5284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:46 Heat of formation + Delta-G solvation = 33.705107 kcal Electronic energy + Delta-G solvation = -19625.449015 eV Core-core repulsion = 16520.516255 eV Total energy + Delta-G solvation = -3104.932760 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93062 -38.74871 -38.52510 -37.13838 -35.57585 -33.83417 -32.55460 -31.92949 -30.04128 -28.20086 -25.42519 -24.93792 -24.11667 -22.67787 -22.17447 -19.32056 -18.86685 -18.40325 -17.67065 -17.34199 -16.56874 -16.54536 -16.01157 -15.87998 -15.56559 -15.10041 -14.75256 -14.36267 -14.17202 -13.88841 -13.69927 -13.63456 -13.01421 -12.85748 -12.66370 -12.64398 -12.45209 -12.42168 -11.85234 -11.61749 -11.52068 -11.30836 -11.23971 -10.57750 -10.35102 -10.28814 -9.95900 -8.34350 -8.21966 -6.34089 -0.55129 -0.11642 0.71574 0.88833 1.38689 1.42279 1.50288 2.09108 2.23518 2.40803 3.07868 3.10953 3.50621 3.57751 3.78643 3.97370 4.07890 4.16340 4.17802 4.23867 4.42621 4.51251 4.60980 4.80208 4.88498 4.90910 4.98059 5.01517 5.08192 5.21922 5.39572 5.44565 5.55358 5.65206 5.79060 5.79405 6.09357 6.21251 6.38911 6.81501 7.32213 7.35202 8.90007 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.003449 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.909411 B = 8115.353084 C = 9138.652023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.104 4.104 11 C 0.137 3.863 12 N -0.716 5.716 13 C 0.415 3.585 14 N -0.594 5.594 15 C 0.123 3.877 16 C -0.225 4.225 17 C 0.007 3.993 18 C -0.107 4.107 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.028 4.028 22 Cl -0.041 7.041 23 C -0.168 4.168 24 H 0.265 0.735 25 H -0.005 1.005 26 H -0.005 1.005 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.402 0.598 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.360 -26.997 -0.892 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.142 4.142 11 C 0.013 3.987 12 N -0.370 5.370 13 C 0.167 3.833 14 N -0.316 5.316 15 C -0.023 4.023 16 C -0.248 4.248 17 C 0.002 3.998 18 C -0.125 4.125 19 C -0.097 4.097 20 C -0.132 4.132 21 C -0.056 4.056 22 Cl -0.012 7.012 23 C -0.174 4.174 24 H 0.074 0.926 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.189 0.811 33 H 0.190 0.810 34 H 0.191 0.809 35 H 0.195 0.805 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.598 -25.904 -0.798 27.636 hybrid contribution 0.654 1.082 -0.027 1.265 sum 10.252 -24.822 -0.825 26.869 Atomic orbital electron populations 1.70101 1.07857 1.27971 1.51289 1.26015 0.95809 1.03476 0.94556 0.85459 0.78251 0.77853 0.79235 1.19076 1.20697 1.19097 1.21624 0.93572 0.92169 1.51116 0.92025 1.18881 0.94154 0.92469 0.95236 1.21597 0.98673 0.92938 1.00987 1.21160 0.91828 0.85143 1.00593 1.47097 1.11679 1.01588 1.76587 1.18931 0.89400 0.85784 0.89219 1.67165 1.13175 1.26806 1.24468 1.22388 1.01415 0.86084 0.92382 1.21823 0.91835 1.01489 1.09689 1.18296 0.95393 0.90862 0.95282 1.21482 0.93004 0.99069 0.98941 1.21370 0.96181 0.96331 0.95778 1.21141 1.01016 0.91122 0.99965 1.20778 0.92544 0.85891 1.06380 1.98150 1.82111 1.24037 1.96882 1.18447 0.92360 0.94702 1.11892 0.92650 0.98683 0.98672 0.92514 0.92487 0.93308 0.93132 0.73622 0.81056 0.80957 0.80878 0.80472 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.44 7.74 -2.92 -0.02 3.41 16 9 C 0.03 1.68 4.97 29.85 0.15 1.82 16 10 C -0.10 -4.61 5.27 30.59 0.16 -4.45 16 11 C 0.14 5.61 5.71 86.38 0.49 6.10 16 12 N -0.72 -25.74 5.45 -344.04 -1.88 -27.61 16 13 C 0.41 14.12 7.52 133.91 1.01 15.12 16 14 N -0.59 -20.35 9.54 -193.36 -1.85 -22.20 16 15 C 0.12 3.12 11.06 84.06 0.93 4.05 16 16 C -0.23 -4.44 9.87 22.41 0.22 -4.22 16 17 C 0.01 0.15 5.75 -21.30 -0.12 0.03 16 18 C -0.11 -1.38 9.81 22.29 0.22 -1.16 16 19 C -0.08 -0.84 9.95 22.06 0.22 -0.62 16 20 C -0.11 -1.77 9.73 22.09 0.21 -1.56 16 21 C -0.03 -0.66 6.32 22.33 0.14 -0.51 16 22 Cl -0.04 -1.03 24.47 -2.72 -0.07 -1.10 16 23 C -0.17 -4.64 5.76 -21.20 -0.12 -4.76 16 24 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.40 13.30 3.12 -92.71 -0.29 13.01 16 32 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 36 H 0.16 1.68 8.06 -2.92 -0.02 1.66 16 Total: -1.00 -73.44 318.20 3.53 -69.91 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.80 Total: 13.36 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 4.21 Total: -21.59 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -3.44 Total: -107.68 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.10 kcal Total: -73.44 3.53 -69.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.613 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds