Wall clock time and date at job start Tue Mar 31 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43202 * 119.99799 * 105.01546 * 3 2 1 5 5 N 3.51039 * 140.68927 * 105.01349 * 2 1 3 6 6 C 1.41156 * 120.00208 * 285.02093 * 3 2 1 7 7 C 1.38978 * 119.99662 * 185.24419 * 6 3 2 8 8 H 1.07993 * 120.00632 * 331.52515 * 7 6 3 9 9 C 1.40851 * 119.99758 * 151.80578 * 7 6 3 10 10 N 1.30326 * 120.00335 * 165.40114 * 9 7 6 11 11 Si 1.86800 * 119.99574 * 345.39828 * 9 7 6 12 12 H 1.48496 * 109.47099 * 85.48097 * 11 9 7 13 13 H 1.48505 * 109.47100 * 205.47794 * 11 9 7 14 14 H 1.48496 * 109.47224 * 325.47333 * 11 9 7 15 15 N 1.38349 * 119.99794 * 5.24221 * 6 3 2 16 16 C 1.39297 * 119.99886 * 120.76952 * 15 6 3 17 17 C 1.38035 * 119.23880 * 353.78822 * 16 15 6 18 18 C 1.40430 * 118.53423 * 179.78595 * 17 16 15 19 19 C 1.40343 * 122.13691 * 180.18772 * 18 17 16 20 20 C 1.36172 * 119.48676 * 180.27609 * 19 18 17 21 21 C 1.39412 * 121.01123 * 0.02562 * 20 19 18 22 22 C 1.36143 * 121.12159 * 0.02562 * 21 20 19 23 23 C 1.40427 * 119.54777 * 359.97438 * 22 21 20 24 24 C 1.40335 * 121.93295 * 179.97438 * 23 22 21 25 25 N 1.31224 * 120.15436 * 180.02562 * 24 23 22 26 26 H 0.96997 * 120.00449 * 179.97438 * 10 9 7 27 27 H 0.96998 * 120.00257 * 300.76830 * 15 6 3 28 28 H 1.08001 * 120.72847 * 0.02562 * 17 16 15 29 29 H 1.08001 * 120.25799 * 0.25600 * 19 18 17 30 30 H 1.08000 * 119.49499 * 180.02562 * 20 19 18 31 31 H 1.08002 * 119.43563 * 179.97438 * 21 20 19 32 32 H 1.08001 * 120.22939 * 179.97438 * 22 21 20 33 33 H 1.07999 * 119.92120 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.3223 -1.1978 5 7 3.8520 0.5761 -2.1480 6 6 3.2740 -0.3159 1.1807 7 6 4.6593 -0.2096 1.2115 8 1 5.2315 -0.3427 0.3053 9 6 5.3176 0.0659 2.4258 10 7 6.6049 -0.1124 2.5244 11 14 4.3455 0.6870 3.8951 12 1 3.7813 -0.4676 4.6391 13 1 5.2421 1.4621 4.7899 14 1 3.2407 1.5603 3.4243 15 7 2.5867 -0.7318 2.3071 16 6 2.8566 -1.9785 2.8668 17 6 3.7165 -2.8387 2.2142 18 6 3.9817 -4.0899 2.7940 19 6 4.8463 -5.0208 2.1978 20 6 5.0604 -6.2210 2.8044 21 6 4.4335 -6.5392 4.0083 22 6 3.5878 -5.6615 4.6148 23 6 3.3416 -4.4135 4.0199 24 6 2.4790 -3.4714 4.6011 25 7 2.2737 -2.3156 4.0146 26 1 7.0583 0.0776 3.3605 27 1 1.9170 -0.1553 2.7071 28 1 4.1782 -2.5541 1.2802 29 1 5.3378 -4.7873 1.2649 30 1 5.7260 -6.9373 2.3460 31 1 4.6213 -7.4987 4.4671 32 1 3.1095 -5.9231 5.5471 33 1 1.9830 -3.6981 5.5333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158210451.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:07 Heat of formation + Delta-G solvation = 118.710824 kcal Electronic energy + Delta-G solvation = -21462.340444 eV Core-core repulsion = 18259.986315 eV Total energy + Delta-G solvation = -3202.354129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64096 -38.36463 -36.64389 -35.25861 -34.80935 -33.92574 -32.43609 -31.29925 -30.22666 -28.05272 -27.38554 -24.14958 -23.06185 -21.97708 -21.25925 -19.35184 -18.06584 -17.60636 -17.17582 -16.34022 -16.14849 -15.64188 -15.07271 -14.56391 -14.29078 -13.56947 -13.44385 -13.27800 -13.04028 -12.82135 -12.76105 -12.65726 -12.33967 -11.79801 -11.76872 -11.66503 -11.63157 -11.46661 -11.09139 -11.05645 -10.91518 -10.62933 -10.23162 -9.97577 -9.35573 -9.27061 -8.68936 -8.16257 -7.81838 -6.98650 -5.49523 0.64714 1.20812 1.91437 2.24892 2.75381 2.80819 2.85767 3.31408 3.40183 3.48555 3.77597 3.97957 4.13736 4.23700 4.41146 4.68731 4.92222 4.96786 5.03656 5.06793 5.24628 5.33474 5.43780 5.45603 5.87184 5.91462 6.05478 6.07447 6.14930 6.30396 6.34348 6.54862 6.61504 6.77604 7.01273 7.07416 7.15844 7.40881 7.57603 7.90402 7.90939 8.45118 8.84695 9.04920 9.11140 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.006321 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.030605 B = 4428.428616 C = 4711.265769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.307 3.693 3 C -0.295 4.295 4 C 0.323 3.677 5 N -0.523 5.523 6 C 0.344 3.656 7 C -0.360 4.360 8 H 0.124 0.876 9 C 0.079 3.921 10 N -0.724 5.724 11 Si 0.914 3.086 12 H -0.239 1.239 13 H -0.285 1.285 14 H -0.249 1.249 15 N -0.674 5.674 16 C 0.388 3.612 17 C -0.199 4.199 18 C 0.014 3.986 19 C -0.114 4.114 20 C -0.100 4.100 21 C -0.145 4.145 22 C -0.076 4.076 23 C -0.155 4.155 24 C 0.175 3.825 25 N -0.520 5.520 26 H 0.305 0.695 27 H 0.405 0.595 28 H 0.154 0.846 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -10.130 10.736 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C -0.001 4.001 3 C -0.313 4.313 4 C 0.015 3.985 5 N -0.205 5.205 6 C 0.241 3.759 7 C -0.387 4.387 8 H 0.142 0.858 9 C -0.153 4.153 10 N -0.341 5.341 11 Si 0.737 3.263 12 H -0.163 1.163 13 H -0.212 1.212 14 H -0.173 1.173 15 N -0.303 5.303 16 C 0.167 3.833 17 C -0.224 4.224 18 C 0.009 3.991 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.163 4.163 22 C -0.095 4.095 23 C -0.158 4.158 24 C 0.002 3.998 25 N -0.233 5.233 26 H 0.117 0.883 27 H 0.243 0.757 28 H 0.171 0.829 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.778 -9.020 9.509 13.130 hybrid contribution 0.416 -0.146 0.819 0.930 sum 1.194 -9.166 10.329 13.861 Atomic orbital electron populations 1.81080 1.12296 1.18446 1.09081 1.25151 0.91783 0.90602 0.92529 1.12796 0.82187 1.44999 0.91304 1.24571 0.92102 0.90560 0.91287 1.81068 1.09293 1.18170 1.11953 1.16780 0.89342 0.88471 0.81352 1.20065 0.90580 1.30411 0.97673 0.85824 1.26662 0.95531 0.92255 1.00898 1.69386 1.10500 1.24902 1.29334 0.86167 0.79994 0.81253 0.78866 1.16295 1.21182 1.17306 1.41926 1.42524 1.15986 1.29831 1.17744 0.91420 0.85711 0.88475 1.21660 1.03664 0.93372 1.03737 1.17954 0.94537 0.93679 0.92973 1.20977 0.98321 0.93504 1.00418 1.20879 0.98953 0.96653 0.95404 1.20733 0.99148 0.99872 0.96579 1.20841 0.97316 0.92399 0.98984 1.18857 1.02490 0.97035 0.97459 1.22716 0.92794 0.86834 0.97412 1.66694 1.26358 1.20564 1.09698 0.88321 0.75734 0.82881 0.85228 0.86193 0.86378 0.85701 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.14 18.54 41.84 0.78 -11.37 16 2 C 0.31 6.77 14.79 -22.47 -0.33 6.44 16 3 C -0.29 -6.28 5.88 -104.94 -0.62 -6.90 16 4 C 0.32 7.31 13.99 -22.48 -0.31 6.99 16 5 N -0.52 -12.39 18.54 41.83 0.78 -11.62 16 6 C 0.34 6.90 4.40 -83.54 -0.37 6.54 16 7 C -0.36 -7.47 7.07 -38.32 -0.27 -7.74 16 8 H 0.12 2.78 7.36 -52.49 -0.39 2.39 16 9 C 0.08 1.58 5.20 -17.20 -0.09 1.49 16 10 N -0.72 -14.84 13.90 55.60 0.77 -14.07 16 11 Si 0.91 16.58 24.48 -169.99 -4.16 12.42 16 12 H -0.24 -4.36 5.60 56.52 0.32 -4.04 16 13 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 14 H -0.25 -4.54 7.00 56.52 0.40 -4.15 16 15 N -0.67 -12.74 2.30 -9.82 -0.02 -12.76 16 16 C 0.39 7.12 5.30 -154.56 -0.82 6.30 16 17 C -0.20 -3.57 8.54 -38.83 -0.33 -3.90 16 18 C 0.01 0.22 5.74 -106.83 -0.61 -0.39 16 19 C -0.11 -1.59 9.81 -39.53 -0.39 -1.97 16 20 C -0.10 -1.15 9.95 -39.89 -0.40 -1.55 16 21 C -0.14 -1.55 9.94 -39.90 -0.40 -1.95 16 22 C -0.08 -0.85 9.80 -39.51 -0.39 -1.24 16 23 C -0.15 -2.21 5.74 -106.83 -0.61 -2.82 16 24 C 0.17 2.47 11.03 -17.02 -0.19 2.29 16 25 N -0.52 -8.94 9.57 -12.06 -0.12 -9.05 16 26 H 0.30 5.64 8.29 -40.82 -0.34 5.30 16 27 H 0.40 7.40 8.14 -40.82 -0.33 7.07 16 28 H 0.15 2.87 6.07 -52.49 -0.32 2.55 16 29 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 304.36 15.07 4.59 4.59 Total: -1.00 -25.76 304.36 -5.89 -31.65 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -2.38 Total: 8.63 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -6.13 Total: 1.57 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 2.19 Total: -58.86 kcal Atomic # 14 Polarization: 16.58 SS G_CDS: -4.16 Total: 12.42 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.76 -5.89 -31.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210451.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.360 kcal (2) G-P(sol) polarization free energy of solvation -25.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds