Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43202 * 119.99799 * 105.01546 * 3 2 1 5 5 N 3.51039 * 140.68927 * 105.01349 * 2 1 3 6 6 C 1.41156 * 120.00208 * 285.02093 * 3 2 1 7 7 C 1.38978 * 119.99662 * 185.24419 * 6 3 2 8 8 H 1.07993 * 120.00632 * 331.52515 * 7 6 3 9 9 C 1.40851 * 119.99758 * 151.80578 * 7 6 3 10 10 N 1.30326 * 120.00335 * 165.40114 * 9 7 6 11 11 Si 1.86800 * 119.99574 * 345.39828 * 9 7 6 12 12 H 1.48496 * 109.47099 * 85.48097 * 11 9 7 13 13 H 1.48505 * 109.47100 * 205.47794 * 11 9 7 14 14 H 1.48496 * 109.47224 * 325.47333 * 11 9 7 15 15 N 1.38349 * 119.99794 * 5.24221 * 6 3 2 16 16 C 1.39297 * 119.99886 * 120.76952 * 15 6 3 17 17 C 1.38035 * 119.23880 * 353.78822 * 16 15 6 18 18 C 1.40430 * 118.53423 * 179.78595 * 17 16 15 19 19 C 1.40343 * 122.13691 * 180.18772 * 18 17 16 20 20 C 1.36172 * 119.48676 * 180.27609 * 19 18 17 21 21 C 1.39412 * 121.01123 * 0.02562 * 20 19 18 22 22 C 1.36143 * 121.12159 * 0.02562 * 21 20 19 23 23 C 1.40427 * 119.54777 * 359.97438 * 22 21 20 24 24 C 1.40335 * 121.93295 * 179.97438 * 23 22 21 25 25 N 1.31224 * 120.15436 * 180.02562 * 24 23 22 26 26 H 0.96997 * 120.00449 * 179.97438 * 10 9 7 27 27 H 0.96998 * 120.00257 * 300.76830 * 15 6 3 28 28 H 1.08001 * 120.72847 * 0.02562 * 17 16 15 29 29 H 1.08001 * 120.25799 * 0.25600 * 19 18 17 30 30 H 1.08000 * 119.49499 * 180.02562 * 20 19 18 31 31 H 1.08002 * 119.43563 * 179.97438 * 21 20 19 32 32 H 1.08001 * 120.22939 * 179.97438 * 22 21 20 33 33 H 1.07999 * 119.92120 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.3223 -1.1978 5 7 3.8520 0.5761 -2.1480 6 6 3.2740 -0.3159 1.1807 7 6 4.6593 -0.2096 1.2115 8 1 5.2315 -0.3427 0.3053 9 6 5.3176 0.0659 2.4258 10 7 6.6049 -0.1124 2.5244 11 14 4.3455 0.6870 3.8951 12 1 3.7813 -0.4676 4.6391 13 1 5.2421 1.4621 4.7899 14 1 3.2407 1.5603 3.4243 15 7 2.5867 -0.7318 2.3071 16 6 2.8566 -1.9785 2.8668 17 6 3.7165 -2.8387 2.2142 18 6 3.9817 -4.0899 2.7940 19 6 4.8463 -5.0208 2.1978 20 6 5.0604 -6.2210 2.8044 21 6 4.4335 -6.5392 4.0083 22 6 3.5878 -5.6615 4.6148 23 6 3.3416 -4.4135 4.0199 24 6 2.4790 -3.4714 4.6011 25 7 2.2737 -2.3156 4.0146 26 1 7.0583 0.0776 3.3605 27 1 1.9170 -0.1553 2.7071 28 1 4.1782 -2.5541 1.2802 29 1 5.3378 -4.7873 1.2649 30 1 5.7260 -6.9373 2.3460 31 1 4.6213 -7.4987 4.4671 32 1 3.1095 -5.9231 5.5471 33 1 1.9830 -3.6981 5.5333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158210451.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = 105.780629 kcal Electronic energy + Delta-G solvation = -21462.901140 eV Core-core repulsion = 18259.986315 eV Total energy + Delta-G solvation = -3202.914824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 7.41 seconds Orbital eigenvalues (eV) -41.80847 -39.70230 -37.97504 -36.91545 -36.62515 -35.48640 -33.55335 -32.62531 -31.46463 -29.25889 -29.07462 -25.29193 -24.26466 -23.04972 -22.75294 -20.94664 -19.36613 -19.18678 -18.37410 -17.91926 -17.40428 -16.86503 -16.24287 -15.69303 -15.57323 -14.92112 -14.74763 -14.69439 -14.42187 -14.33594 -14.31016 -13.91789 -13.70632 -13.53176 -13.47873 -13.28203 -12.96059 -12.83589 -12.71473 -12.63657 -12.14001 -11.89095 -11.64453 -11.30358 -10.58377 -10.51436 -9.93562 -9.54536 -9.39154 -8.27851 -7.21732 -0.41818 0.06471 0.37859 1.15582 1.24845 1.35718 1.40783 1.91164 1.94689 2.05679 2.15950 2.25021 2.46461 2.54791 3.24888 3.32668 3.62208 3.65962 3.90600 3.98795 4.07219 4.16360 4.38198 4.45075 4.47062 4.67192 4.82657 4.88117 4.98140 5.09252 5.24918 5.35498 5.48784 5.59934 5.66248 5.69287 5.82437 6.00180 6.10718 6.36943 6.48458 7.05312 7.16259 7.25330 7.55798 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.006321 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.030605 B = 4428.428616 C = 4711.265769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C 0.316 3.684 3 C -0.305 4.305 4 C 0.329 3.671 5 N -0.548 5.548 6 C 0.359 3.641 7 C -0.360 4.360 8 H 0.100 0.900 9 C 0.062 3.938 10 N -0.741 5.741 11 Si 0.953 3.047 12 H -0.237 1.237 13 H -0.278 1.278 14 H -0.251 1.251 15 N -0.677 5.677 16 C 0.370 3.630 17 C -0.223 4.223 18 C -0.006 4.006 19 C -0.147 4.147 20 C -0.085 4.085 21 C -0.142 4.142 22 C -0.069 4.069 23 C -0.166 4.166 24 C 0.183 3.817 25 N -0.543 5.543 26 H 0.316 0.684 27 H 0.406 0.594 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -12.483 13.727 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.228 5.228 2 C 0.010 3.990 3 C -0.324 4.324 4 C 0.021 3.979 5 N -0.231 5.231 6 C 0.255 3.745 7 C -0.387 4.387 8 H 0.118 0.882 9 C -0.169 4.169 10 N -0.359 5.359 11 Si 0.775 3.225 12 H -0.160 1.160 13 H -0.205 1.205 14 H -0.175 1.175 15 N -0.307 5.307 16 C 0.151 3.849 17 C -0.248 4.248 18 C -0.011 4.011 19 C -0.166 4.166 20 C -0.104 4.104 21 C -0.160 4.160 22 C -0.088 4.088 23 C -0.169 4.169 24 C 0.011 3.989 25 N -0.256 5.256 26 H 0.129 0.871 27 H 0.244 0.756 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.174 0.826 32 H 0.183 0.817 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.741 -11.394 12.500 16.930 hybrid contribution 0.564 0.321 -0.018 0.650 sum 1.305 -11.074 12.483 16.738 Atomic orbital electron populations 1.81068 1.12637 1.19437 1.09632 1.25146 0.91726 0.90126 0.92044 1.12840 0.81965 1.46196 0.91388 1.24773 0.91730 0.90089 0.91270 1.81046 1.09953 1.19487 1.12627 1.16557 0.89004 0.87373 0.81559 1.19974 0.90891 1.30493 0.97321 0.88215 1.27099 0.95935 0.91977 1.01870 1.69370 1.11182 1.24925 1.30464 0.85581 0.79110 0.80846 0.76996 1.16044 1.20475 1.17524 1.41826 1.42660 1.16615 1.29582 1.17785 0.92342 0.85385 0.89388 1.21544 1.04836 0.94904 1.03530 1.18216 0.95430 0.93309 0.94144 1.21078 0.99540 0.94765 1.01189 1.21306 0.98009 0.95710 0.95378 1.21229 0.97810 1.01217 0.95757 1.21299 0.96808 0.90697 1.00033 1.19188 1.02303 0.98556 0.96870 1.23521 0.91728 0.85573 0.98066 1.66746 1.27109 1.22178 1.09542 0.87142 0.75560 0.85242 0.85858 0.83458 0.82577 0.81671 0.77827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -25.32 18.54 19.00 0.35 -24.97 16 2 C 0.32 14.20 14.79 88.33 1.31 15.51 16 3 C -0.31 -13.42 5.88 -20.07 -0.12 -13.54 16 4 C 0.33 15.37 13.99 88.33 1.24 16.60 16 5 N -0.55 -26.79 18.54 19.00 0.35 -26.43 16 6 C 0.36 14.90 4.40 39.01 0.17 15.07 16 7 C -0.36 -15.51 7.07 23.09 0.16 -15.35 16 8 H 0.10 4.75 7.36 -2.91 -0.02 4.73 16 9 C 0.06 2.53 5.20 85.56 0.44 2.98 16 10 N -0.74 -30.66 13.90 21.98 0.31 -30.36 16 11 Si 0.95 33.65 24.48 68.60 1.68 35.33 16 12 H -0.24 -8.31 5.60 99.48 0.56 -7.75 16 13 H -0.28 -9.44 7.11 99.48 0.71 -8.73 16 14 H -0.25 -8.92 7.00 99.48 0.70 -8.23 16 15 N -0.68 -25.99 2.30 -184.97 -0.42 -26.42 16 16 C 0.37 13.68 5.30 132.50 0.70 14.38 16 17 C -0.22 -8.26 8.54 22.76 0.19 -8.07 16 18 C -0.01 -0.18 5.74 -21.29 -0.12 -0.30 16 19 C -0.15 -4.03 9.81 22.30 0.22 -3.82 16 20 C -0.09 -1.71 9.95 22.07 0.22 -1.49 16 21 C -0.14 -2.35 9.94 22.06 0.22 -2.13 16 22 C -0.07 -1.23 9.80 22.32 0.22 -1.01 16 23 C -0.17 -4.30 5.74 -21.29 -0.12 -4.42 16 24 C 0.18 4.67 11.03 85.29 0.94 5.61 16 25 N -0.54 -17.96 9.57 -192.08 -1.84 -19.80 16 26 H 0.32 11.59 8.29 -92.71 -0.77 10.82 16 27 H 0.41 14.97 8.14 -92.71 -0.76 14.22 16 28 H 0.13 5.25 6.07 -2.91 -0.02 5.23 16 29 H 0.12 3.36 8.06 -2.91 -0.02 3.33 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -57.12 304.36 6.38 -50.74 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.28 Total: 21.88 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.67 Total: 20.03 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -1.25 Total: -127.98 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 1.68 Total: 35.33 kcal Total: -57.12 6.38 -50.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210451.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.522 kcal (2) G-P(sol) polarization free energy of solvation -57.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.41 seconds