Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43203 * 120.00365 * 357.82122 * 3 2 1 5 5 N 3.51038 * 140.68587 * 357.82388 * 2 1 3 6 6 C 1.41143 * 119.99623 * 177.82496 * 3 2 1 7 7 C 1.38954 * 120.00135 * 356.05252 * 6 3 2 8 8 H 1.07995 * 120.00180 * 22.39785 * 7 6 3 9 9 C 1.40867 * 119.99882 * 202.40391 * 7 6 3 10 10 N 1.30321 * 119.99977 * 12.55572 * 9 7 6 11 11 Si 1.86804 * 119.99917 * 192.55963 * 9 7 6 12 12 H 1.48502 * 109.47021 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46966 * 119.99940 * 11 9 7 14 14 H 1.48496 * 109.46809 * 239.99634 * 11 9 7 15 15 N 1.38412 * 119.99495 * 176.05267 * 6 3 2 16 16 C 1.38618 * 119.99846 * 238.39200 * 15 6 3 17 17 N 1.31954 * 120.13976 * 5.15940 * 16 15 6 18 18 C 1.32608 * 122.64505 * 180.02562 * 17 16 15 19 19 C 1.36118 * 121.98894 * 359.37367 * 18 17 16 20 20 C 1.40830 * 118.84856 * 0.92594 * 19 18 17 21 21 C 1.40180 * 122.18381 * 179.09781 * 20 19 18 22 22 C 1.36280 * 119.47527 * 180.02562 * 21 20 19 23 23 C 1.39281 * 120.98292 * 359.97438 * 22 21 20 24 24 C 1.36302 * 121.04239 * 0.02562 * 23 22 21 25 25 C 1.40095 * 119.53403 * 0.27423 * 24 23 22 26 26 H 0.97004 * 119.99810 * 184.90069 * 10 9 7 27 27 H 0.97001 * 120.00374 * 58.39765 * 15 6 3 28 28 H 1.07999 * 119.00467 * 180.02562 * 18 17 16 29 29 H 1.07998 * 120.56903 * 180.02562 * 19 18 17 30 30 H 1.08004 * 120.25860 * 0.04747 * 21 20 19 31 31 H 1.08004 * 119.50607 * 180.02562 * 22 21 20 32 32 H 1.07997 * 119.48392 * 179.97438 * 23 22 21 33 33 H 1.07998 * 120.23091 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2846 -1.2383 0.0471 5 7 3.8519 -2.2225 0.0845 6 6 3.2730 1.2225 -0.0464 7 6 2.5802 2.4201 -0.1748 8 1 1.5419 2.4772 0.1168 9 6 3.2320 3.5596 -0.6854 10 7 4.3948 3.4416 -1.2619 11 14 2.4297 5.2400 -0.5361 12 1 1.1216 5.1044 0.1535 13 1 3.3118 6.1418 0.2474 14 1 2.2179 5.8094 -1.8911 15 7 4.6547 1.2276 0.0360 16 6 5.2859 1.9315 1.0497 17 7 4.5732 2.5131 1.9957 18 6 5.1249 3.1987 2.9877 19 6 6.4738 3.3392 3.1043 20 6 7.3047 2.7536 2.1297 21 6 8.7010 2.8703 2.1712 22 6 9.4523 2.2815 1.1985 23 6 8.8535 1.5654 0.1648 24 6 7.4988 1.4325 0.0947 25 6 6.6946 2.0300 1.0740 26 1 4.8760 4.2332 -1.5497 27 1 5.1813 0.7387 -0.6156 28 1 4.4851 3.6506 3.7312 29 1 6.8986 3.9025 3.9219 30 1 9.1776 3.4223 2.9679 31 1 10.5282 2.3708 1.2302 32 1 9.4722 1.1089 -0.5936 33 1 7.0482 0.8747 -0.7129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158210770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = 113.876364 kcal Electronic energy + Delta-G solvation = -21615.085838 eV Core-core repulsion = 18412.522071 eV Total energy + Delta-G solvation = -3202.563767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50967 -37.80115 -36.55665 -35.23905 -34.69095 -33.84340 -32.06311 -30.91575 -29.96071 -28.29009 -27.09394 -23.70286 -23.29304 -22.04238 -20.93991 -19.06691 -17.97851 -17.53187 -16.97561 -16.20706 -15.96233 -15.47497 -14.94049 -14.33000 -14.11054 -13.69211 -13.52136 -13.23977 -12.79275 -12.58096 -12.47733 -12.30480 -11.98908 -11.75304 -11.63120 -11.53645 -11.49482 -11.46413 -11.00431 -10.91153 -10.83002 -10.73664 -10.23587 -10.03241 -9.01510 -8.79459 -8.74687 -8.08056 -7.65431 -6.76483 -5.35980 0.89729 1.31135 2.09748 2.47473 2.73667 2.82479 2.89691 3.44298 3.50663 3.67695 3.88800 4.07948 4.28957 4.35494 4.61616 4.86298 4.94800 5.09815 5.15534 5.24082 5.39564 5.47812 5.56456 5.64764 5.76725 6.09137 6.11590 6.22963 6.25151 6.38527 6.40100 6.63968 6.72633 6.88459 7.09269 7.15048 7.36965 7.61190 7.78649 8.05246 8.29062 8.87684 8.98151 9.17180 9.21703 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.007252 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.611000 B = 3860.279200 C = 4993.292104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C 0.328 3.672 3 C -0.313 4.313 4 C 0.309 3.691 5 N -0.538 5.538 6 C 0.386 3.614 7 C -0.346 4.346 8 H 0.111 0.889 9 C 0.080 3.920 10 N -0.729 5.729 11 Si 0.922 3.078 12 H -0.246 1.246 13 H -0.262 1.262 14 H -0.265 1.265 15 N -0.627 5.627 16 C 0.478 3.522 17 N -0.542 5.542 18 C 0.148 3.852 19 C -0.255 4.255 20 C 0.018 3.982 21 C -0.133 4.133 22 C -0.093 4.093 23 C -0.152 4.152 24 C -0.060 4.060 25 C -0.144 4.144 26 H 0.301 0.699 27 H 0.408 0.592 28 H 0.145 0.855 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.183 8.253 2.478 14.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.218 5.218 2 C 0.020 3.980 3 C -0.332 4.332 4 C 0.002 3.998 5 N -0.220 5.220 6 C 0.282 3.718 7 C -0.374 4.374 8 H 0.129 0.871 9 C -0.150 4.150 10 N -0.348 5.348 11 Si 0.743 3.257 12 H -0.169 1.169 13 H -0.187 1.187 14 H -0.190 1.190 15 N -0.250 5.250 16 C 0.230 3.770 17 N -0.261 5.261 18 C 0.001 3.999 19 C -0.279 4.279 20 C 0.013 3.987 21 C -0.151 4.151 22 C -0.112 4.112 23 C -0.170 4.170 24 C -0.080 4.080 25 C -0.149 4.149 26 H 0.112 0.888 27 H 0.246 0.754 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.411 6.798 2.378 11.851 hybrid contribution 1.272 1.130 -0.222 1.716 sum 10.683 7.928 2.155 13.477 Atomic orbital electron populations 1.81050 1.12208 1.08850 1.19645 1.24625 0.91244 0.91971 0.90157 1.12851 0.83129 0.85888 1.51325 1.25256 0.92484 0.91882 0.90180 1.81092 1.09943 1.10791 1.20210 1.16629 0.79524 0.90661 0.84952 1.20136 0.99296 0.92750 1.25196 0.87129 1.26449 0.94514 1.03146 0.90937 1.69441 1.11217 1.34758 1.19335 0.85949 0.81368 0.78610 0.79739 1.16908 1.18678 1.18985 1.41362 1.05486 1.50415 1.27715 1.18144 0.86160 0.86295 0.86357 1.67198 1.39404 1.15065 1.04412 1.21843 0.92506 0.92180 0.93396 1.21358 0.94732 1.09316 1.02465 1.17887 0.93655 0.94229 0.92977 1.20816 0.92375 1.02008 0.99907 1.20850 0.99590 0.96485 0.94252 1.20684 0.94715 1.02024 0.99618 1.20823 0.93811 0.96628 0.96695 1.18393 0.92800 1.04901 0.98841 0.88759 0.75374 0.83793 0.85788 0.85843 0.86405 0.86276 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -12.98 18.54 41.84 0.78 -12.21 16 2 C 0.33 7.68 13.92 -22.47 -0.31 7.37 16 3 C -0.31 -7.01 5.88 -104.94 -0.62 -7.63 16 4 C 0.31 7.05 14.79 -22.45 -0.33 6.71 16 5 N -0.54 -12.66 18.54 41.86 0.78 -11.89 16 6 C 0.39 8.20 5.48 -83.53 -0.46 7.74 16 7 C -0.35 -7.32 7.71 -38.32 -0.30 -7.61 16 8 H 0.11 2.41 7.06 -52.49 -0.37 2.04 16 9 C 0.08 1.56 4.85 -17.20 -0.08 1.47 16 10 N -0.73 -13.92 11.27 55.60 0.63 -13.30 16 11 Si 0.92 15.48 29.59 -169.99 -5.03 10.45 16 12 H -0.25 -4.25 7.11 56.52 0.40 -3.85 16 13 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 14 H -0.27 -4.37 7.11 56.52 0.40 -3.97 16 15 N -0.63 -12.19 3.31 -9.43 -0.03 -12.22 16 16 C 0.48 9.09 6.04 -154.97 -0.94 8.16 16 17 N -0.54 -10.51 8.76 -12.41 -0.11 -10.62 16 18 C 0.15 2.42 11.06 -17.98 -0.20 2.22 16 19 C -0.26 -3.78 9.87 -39.36 -0.39 -4.17 16 20 C 0.02 0.28 5.74 -106.83 -0.61 -0.34 16 21 C -0.13 -1.72 9.81 -39.56 -0.39 -2.11 16 22 C -0.09 -1.11 9.95 -39.90 -0.40 -1.50 16 23 C -0.15 -1.95 9.95 -39.89 -0.40 -2.34 16 24 C -0.06 -0.90 9.51 -39.58 -0.38 -1.28 16 25 C -0.14 -2.46 5.75 -106.71 -0.61 -3.08 16 26 H 0.30 5.29 8.29 -40.82 -0.34 4.95 16 27 H 0.41 7.40 6.95 -40.82 -0.28 7.12 16 28 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.74 6.52 -52.49 -0.34 1.40 16 LS Contribution 310.75 15.07 4.68 4.68 Total: -1.00 -25.95 310.75 -6.96 -32.92 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -2.24 Total: 8.56 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -6.41 Total: 3.62 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 2.04 Total: -60.23 kcal Atomic # 14 Polarization: 15.48 SS G_CDS: -5.03 Total: 10.45 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -25.95 -6.96 -32.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.792 kcal (2) G-P(sol) polarization free energy of solvation -25.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds