Wall clock time and date at job start Tue Mar 31 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43203 * 120.00365 * 357.82122 * 3 2 1 5 5 N 3.51038 * 140.68587 * 357.82388 * 2 1 3 6 6 C 1.41143 * 119.99623 * 177.82496 * 3 2 1 7 7 C 1.38954 * 120.00135 * 356.05252 * 6 3 2 8 8 H 1.07995 * 120.00180 * 22.39785 * 7 6 3 9 9 C 1.40867 * 119.99882 * 202.40391 * 7 6 3 10 10 N 1.30321 * 119.99977 * 12.55572 * 9 7 6 11 11 Si 1.86804 * 119.99917 * 192.55963 * 9 7 6 12 12 H 1.48502 * 109.47021 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46966 * 119.99940 * 11 9 7 14 14 H 1.48496 * 109.46809 * 239.99634 * 11 9 7 15 15 N 1.38412 * 119.99495 * 176.05267 * 6 3 2 16 16 C 1.38618 * 119.99846 * 238.39200 * 15 6 3 17 17 N 1.31954 * 120.13976 * 5.15940 * 16 15 6 18 18 C 1.32608 * 122.64505 * 180.02562 * 17 16 15 19 19 C 1.36118 * 121.98894 * 359.37367 * 18 17 16 20 20 C 1.40830 * 118.84856 * 0.92594 * 19 18 17 21 21 C 1.40180 * 122.18381 * 179.09781 * 20 19 18 22 22 C 1.36280 * 119.47527 * 180.02562 * 21 20 19 23 23 C 1.39281 * 120.98292 * 359.97438 * 22 21 20 24 24 C 1.36302 * 121.04239 * 0.02562 * 23 22 21 25 25 C 1.40095 * 119.53403 * 0.27423 * 24 23 22 26 26 H 0.97004 * 119.99810 * 184.90069 * 10 9 7 27 27 H 0.97001 * 120.00374 * 58.39765 * 15 6 3 28 28 H 1.07999 * 119.00467 * 180.02562 * 18 17 16 29 29 H 1.07998 * 120.56903 * 180.02562 * 19 18 17 30 30 H 1.08004 * 120.25860 * 0.04747 * 21 20 19 31 31 H 1.08004 * 119.50607 * 180.02562 * 22 21 20 32 32 H 1.07997 * 119.48392 * 179.97438 * 23 22 21 33 33 H 1.07998 * 120.23091 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2846 -1.2383 0.0471 5 7 3.8519 -2.2225 0.0845 6 6 3.2730 1.2225 -0.0464 7 6 2.5802 2.4201 -0.1748 8 1 1.5419 2.4772 0.1168 9 6 3.2320 3.5596 -0.6854 10 7 4.3948 3.4416 -1.2619 11 14 2.4297 5.2400 -0.5361 12 1 1.1216 5.1044 0.1535 13 1 3.3118 6.1418 0.2474 14 1 2.2179 5.8094 -1.8911 15 7 4.6547 1.2276 0.0360 16 6 5.2859 1.9315 1.0497 17 7 4.5732 2.5131 1.9957 18 6 5.1249 3.1987 2.9877 19 6 6.4738 3.3392 3.1043 20 6 7.3047 2.7536 2.1297 21 6 8.7010 2.8703 2.1712 22 6 9.4523 2.2815 1.1985 23 6 8.8535 1.5654 0.1648 24 6 7.4988 1.4325 0.0947 25 6 6.6946 2.0300 1.0740 26 1 4.8760 4.2332 -1.5497 27 1 5.1813 0.7387 -0.6156 28 1 4.4851 3.6506 3.7312 29 1 6.8986 3.9025 3.9219 30 1 9.1776 3.4223 2.9679 31 1 10.5282 2.3708 1.2302 32 1 9.4722 1.1089 -0.5936 33 1 7.0482 0.8747 -0.7129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158210770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:40 Heat of formation + Delta-G solvation = 102.611390 kcal Electronic energy + Delta-G solvation = -21615.574324 eV Core-core repulsion = 18412.522071 eV Total energy + Delta-G solvation = -3203.052253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70752 -39.19975 -37.84896 -36.93549 -36.52992 -35.30856 -33.43956 -32.10492 -31.24688 -29.55888 -28.76171 -24.91655 -24.45381 -23.38216 -22.31059 -20.65000 -19.24138 -19.05841 -18.31458 -17.69673 -17.20779 -16.75609 -16.18668 -15.52632 -15.34965 -15.04401 -14.70306 -14.58214 -14.37829 -14.34553 -13.91789 -13.50825 -13.47741 -13.38482 -13.34510 -13.07180 -12.99140 -12.70343 -12.63175 -12.50348 -12.10985 -11.90783 -11.64269 -11.45631 -10.31374 -10.07654 -9.87924 -9.59636 -9.10431 -8.09045 -7.07123 -0.24527 0.18185 0.61724 1.26826 1.33985 1.48807 1.51722 2.02521 2.07373 2.20804 2.23373 2.39886 2.58358 2.71067 3.36788 3.46660 3.75434 3.82463 3.89326 4.01825 4.18028 4.24515 4.48481 4.52879 4.64263 4.69443 4.71907 5.01411 5.05187 5.16515 5.32818 5.42608 5.57180 5.62654 5.66945 5.90861 6.03570 6.12073 6.23083 6.60355 6.75035 7.18172 7.33673 7.58812 7.71246 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.007252 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.611000 B = 3860.279200 C = 4993.292104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C 0.331 3.669 3 C -0.331 4.331 4 C 0.316 3.684 5 N -0.557 5.557 6 C 0.382 3.618 7 C -0.349 4.349 8 H 0.098 0.902 9 C 0.057 3.943 10 N -0.726 5.726 11 Si 0.972 3.028 12 H -0.257 1.257 13 H -0.258 1.258 14 H -0.255 1.255 15 N -0.632 5.632 16 C 0.454 3.546 17 N -0.572 5.572 18 C 0.117 3.883 19 C -0.236 4.236 20 C -0.008 4.008 21 C -0.130 4.130 22 C -0.090 4.090 23 C -0.140 4.140 24 C -0.088 4.088 25 C -0.160 4.160 26 H 0.310 0.690 27 H 0.409 0.591 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.966 10.246 2.942 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.242 5.242 2 C 0.025 3.975 3 C -0.350 4.350 4 C 0.010 3.990 5 N -0.241 5.241 6 C 0.278 3.722 7 C -0.376 4.376 8 H 0.116 0.884 9 C -0.174 4.174 10 N -0.344 5.344 11 Si 0.792 3.208 12 H -0.180 1.180 13 H -0.182 1.182 14 H -0.179 1.179 15 N -0.256 5.256 16 C 0.208 3.792 17 N -0.292 5.292 18 C -0.029 4.029 19 C -0.259 4.259 20 C -0.013 4.013 21 C -0.148 4.148 22 C -0.109 4.109 23 C -0.158 4.158 24 C -0.107 4.107 25 C -0.165 4.165 26 H 0.122 0.878 27 H 0.247 0.753 28 H 0.182 0.818 29 H 0.175 0.825 30 H 0.172 0.828 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.232 8.797 2.863 15.337 hybrid contribution 0.628 0.628 -0.338 0.950 sum 12.860 9.425 2.525 16.143 Atomic orbital electron populations 1.81022 1.12680 1.09453 1.21087 1.24829 0.91488 0.91454 0.89744 1.12971 0.82713 0.86327 1.52984 1.25306 0.92159 0.91729 0.89762 1.81066 1.10456 1.11147 1.21430 1.16615 0.80670 0.90153 0.84736 1.20230 0.98846 0.93690 1.24803 0.88411 1.26917 0.94941 1.04831 0.90701 1.69423 1.11147 1.35914 1.17918 0.85221 0.80097 0.75544 0.79983 1.17990 1.18174 1.17898 1.41230 1.04502 1.51450 1.28458 1.18325 0.87133 0.87266 0.86474 1.67103 1.40907 1.15839 1.05330 1.22243 0.93872 0.93101 0.93676 1.21740 0.94096 1.07574 1.02443 1.18290 0.95305 0.94726 0.92987 1.21204 0.91101 1.01636 1.00839 1.21310 1.01542 0.94962 0.93069 1.21101 0.93974 1.00663 1.00090 1.20940 0.94940 0.97916 0.96951 1.18589 0.92151 1.05685 1.00065 0.87755 0.75260 0.81834 0.82478 0.82766 0.82598 0.83657 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.83 18.54 19.00 0.35 -27.48 16 2 C 0.33 16.03 13.92 88.33 1.23 17.26 16 3 C -0.33 -15.33 5.88 -20.07 -0.12 -15.44 16 4 C 0.32 14.87 14.79 88.33 1.31 16.18 16 5 N -0.56 -26.84 18.54 19.01 0.35 -26.49 16 6 C 0.38 16.75 5.48 38.99 0.21 16.97 16 7 C -0.35 -15.03 7.71 23.09 0.18 -14.86 16 8 H 0.10 4.40 7.06 -2.91 -0.02 4.38 16 9 C 0.06 2.19 4.85 85.56 0.41 2.60 16 10 N -0.73 -27.38 11.27 21.98 0.25 -27.13 16 11 Si 0.97 30.97 29.59 68.60 2.03 33.00 16 12 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 13 H -0.26 -7.98 7.11 99.48 0.71 -7.27 16 14 H -0.25 -7.69 7.11 99.48 0.71 -6.98 16 15 N -0.63 -25.24 3.31 -183.74 -0.61 -25.84 16 16 C 0.45 17.49 6.04 133.85 0.81 18.30 16 17 N -0.57 -22.42 8.76 -193.19 -1.69 -24.11 16 18 C 0.12 3.72 11.06 84.08 0.93 4.65 16 19 C -0.24 -6.45 9.87 22.41 0.22 -6.22 16 20 C -0.01 -0.23 5.74 -21.30 -0.12 -0.35 16 21 C -0.13 -2.85 9.81 22.28 0.22 -2.63 16 22 C -0.09 -1.76 9.95 22.06 0.22 -1.54 16 23 C -0.14 -3.17 9.95 22.07 0.22 -2.95 16 24 C -0.09 -2.56 9.51 22.27 0.21 -2.35 16 25 C -0.16 -5.37 5.75 -21.22 -0.12 -5.49 16 26 H 0.31 10.55 8.29 -92.71 -0.77 9.79 16 27 H 0.41 15.45 6.95 -92.71 -0.64 14.80 16 28 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.12 3.44 6.52 -2.91 -0.02 3.42 16 Total: -1.00 -56.71 310.75 7.04 -49.67 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.55 Total: 24.28 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 5.81 Total: 24.11 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -1.35 Total: -131.06 kcal Atomic # 14 Polarization: 30.97 SS G_CDS: 2.03 Total: 33.00 kcal Total: -56.71 7.04 -49.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.283 kcal (2) G-P(sol) polarization free energy of solvation -56.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds