Wall clock time and date at job start Tue Mar 31 2020 07:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38689 * 119.27546 * 2 1 4 4 C 1.38012 * 119.62335 * 179.73787 * 3 2 1 5 5 C 1.40999 * 118.28107 * 0.50501 * 4 3 2 6 6 C 1.41025 * 120.70462 * 179.75272 * 5 4 3 7 7 H 1.07998 * 120.00038 * 154.71674 * 6 5 4 8 8 C 1.39953 * 119.99480 * 334.43830 * 6 5 4 9 9 N 1.30859 * 120.00401 * 343.99319 * 8 6 5 10 10 Si 1.86800 * 119.99429 * 163.99302 * 8 6 5 11 11 H 1.48494 * 109.47566 * 60.00060 * 10 8 6 12 12 H 1.48504 * 109.46896 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47262 * 299.99910 * 10 8 6 14 14 C 1.41705 * 118.59126 * 359.48110 * 5 4 3 15 15 N 1.38091 * 119.90582 * 180.25493 * 14 5 4 16 16 C 1.46494 * 119.99811 * 179.97438 * 15 14 5 17 17 C 1.53006 * 109.47199 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.46864 * 304.99746 * 17 16 15 19 19 O 1.42891 * 109.46828 * 64.99731 * 17 16 15 20 20 C 1.52994 * 109.47143 * 185.00026 * 17 16 15 21 21 F 1.39900 * 109.47534 * 60.00252 * 20 17 16 22 22 F 1.39898 * 109.47157 * 180.02562 * 20 17 16 23 23 F 1.39904 * 109.47233 * 299.99753 * 20 17 16 24 24 N 1.31962 * 119.28000 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46998 * 270.02186 * 1 2 3 26 26 H 1.09004 * 109.46999 * 30.01527 * 1 2 3 27 27 H 1.08995 * 109.47377 * 150.02207 * 1 2 3 28 28 H 1.07997 * 120.18539 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.85454 * 180.25640 * 4 3 2 30 30 H 0.97007 * 120.00501 * 180.02562 * 9 8 6 31 31 H 0.96994 * 119.99986 * 359.97438 * 15 14 5 32 32 H 1.08997 * 109.47163 * 299.99639 * 16 15 14 33 33 H 1.09007 * 109.47438 * 59.99555 * 16 15 14 34 34 H 0.96699 * 114.00252 * 60.00627 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2098 0.0000 4 6 3.5652 1.2181 0.0055 5 6 4.2408 -0.0194 0.0000 6 6 5.6502 -0.0705 0.0000 7 1 6.1591 -0.9370 0.3956 8 6 6.3890 0.9993 -0.5181 9 7 5.8047 1.8921 -1.2756 10 14 8.2094 1.1525 -0.1282 11 1 8.9248 -0.0508 -0.6235 12 1 8.7575 2.3629 -0.7915 13 1 8.3931 1.2678 1.3409 14 6 3.4737 -1.2109 0.0004 15 7 4.1074 -2.4378 0.0005 16 6 3.3163 -3.6707 0.0015 17 6 4.2550 -4.8790 0.0006 18 1 4.9424 -4.8044 -0.8419 19 8 4.9981 -4.9056 1.2208 20 6 3.4329 -6.1633 -0.1241 21 9 2.7054 -6.1373 -1.3187 22 9 4.2912 -7.2681 -0.1242 23 9 2.5505 -6.2591 0.9574 24 7 2.1523 -1.1510 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6364 2.1399 0.0004 29 1 4.1135 2.1487 0.0097 30 1 6.3169 2.6334 -1.6350 31 1 5.0763 -2.4832 -0.0002 32 1 2.6883 -3.6988 0.8919 33 1 2.6869 -3.6994 -0.8881 34 1 4.4492 -4.9713 2.0143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158543521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:19 Heat of formation + Delta-G solvation = -180.385116 kcal Electronic energy + Delta-G solvation = -23248.481925 eV Core-core repulsion = 19151.699611 eV Total energy + Delta-G solvation = -4096.782314 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.22259 -47.73383 -47.69836 -38.79586 -37.75994 -34.63143 -34.11535 -31.24217 -30.52206 -29.11675 -27.68623 -25.38880 -23.76856 -22.36596 -20.86478 -20.67027 -18.70845 -18.65520 -18.35576 -17.28438 -16.57930 -15.75484 -15.43937 -15.34795 -14.63919 -14.53734 -14.39184 -14.12706 -13.87686 -13.84817 -13.84350 -13.52894 -13.40385 -13.20532 -12.65930 -12.55197 -11.93151 -11.69364 -11.53043 -11.49811 -11.40391 -11.19611 -10.87475 -10.58298 -10.46576 -9.82684 -9.29532 -8.99143 -8.14314 -7.94044 -6.85875 -6.57756 -4.27042 2.50683 2.68437 3.03674 3.04844 3.07681 3.19034 3.47731 3.60575 3.85246 3.89424 4.30194 4.47069 4.63174 4.69068 4.95353 5.58765 5.76436 5.89434 5.95688 6.11009 6.40512 6.40911 6.54794 6.74167 6.86551 7.08606 7.13068 7.16910 7.57672 7.73608 7.95758 8.19356 8.41154 8.58970 8.74072 8.91280 9.70744 10.16383 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.005393 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.240628 B = 5190.407676 C = 6817.375120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.024 3.976 3 C -0.182 4.182 4 C -0.123 4.123 5 C 0.034 3.966 6 C -0.457 4.457 7 H 0.076 0.924 8 C 0.076 3.924 9 N -0.798 5.798 10 Si 0.908 3.092 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.303 3.697 15 N -0.723 5.723 16 C 0.116 3.884 17 C 0.060 3.940 18 H 0.145 0.855 19 O -0.527 6.527 20 C 0.425 3.575 21 F -0.177 7.177 22 F -0.179 7.179 23 F -0.182 7.182 24 N -0.528 5.528 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.281 0.719 31 H 0.408 0.592 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 -9.719 2.075 10.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.149 4.149 5 C 0.027 3.973 6 C -0.488 4.488 7 H 0.094 0.906 8 C -0.141 4.141 9 N -0.423 5.423 10 Si 0.732 3.268 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.189 1.189 14 C 0.065 3.935 15 N -0.364 5.364 16 C -0.010 4.010 17 C -0.002 4.002 18 H 0.163 0.837 19 O -0.332 6.332 20 C 0.370 3.630 21 F -0.158 7.158 22 F -0.160 7.160 23 F -0.164 7.164 24 N -0.246 5.246 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.246 0.754 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.283 -10.320 1.526 10.679 hybrid contribution 1.048 0.625 0.346 1.269 sum -1.235 -9.695 1.872 9.951 Atomic orbital electron populations 1.20287 0.91745 1.00808 1.00325 1.19944 0.94298 0.87937 1.08851 1.21243 0.95348 0.96682 1.07133 1.21351 0.92117 0.98177 1.03249 1.17884 0.93875 0.89952 0.95547 1.19134 0.90735 1.02983 1.35920 0.90615 1.25813 1.00857 0.94835 0.92638 1.69795 1.38605 1.11106 1.22843 0.86372 0.82029 0.78529 0.79832 1.19050 1.20405 1.18912 1.18319 0.87938 0.85125 1.02074 1.43376 1.07447 1.00346 1.85259 1.21469 0.92766 0.83544 1.03253 1.23491 0.95213 0.89565 0.91945 0.83707 1.86697 1.35994 1.95774 1.14772 1.21543 0.79355 0.88048 0.74051 1.93209 1.78968 1.96720 1.46929 1.93201 1.69930 1.56738 1.96135 1.93184 1.70750 1.96767 1.55671 1.66305 1.08302 1.30045 1.19918 0.93234 0.92858 0.92769 0.88681 0.85650 0.90830 0.75367 0.91601 0.91003 0.76403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.15 36.00 0.37 -0.96 16 2 C 0.02 0.55 6.79 -82.37 -0.56 -0.01 16 3 C -0.18 -4.22 9.69 -39.50 -0.38 -4.61 16 4 C -0.12 -3.12 8.79 -38.62 -0.34 -3.45 16 5 C 0.03 0.88 5.59 -106.47 -0.60 0.28 16 6 C -0.46 -11.33 8.52 -37.88 -0.32 -11.66 16 7 H 0.08 1.77 6.68 -52.49 -0.35 1.42 16 8 C 0.08 1.82 5.19 -17.32 -0.09 1.73 16 9 N -0.80 -19.98 10.96 55.55 0.61 -19.37 16 10 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 11 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 14 C 0.30 7.16 7.52 -155.02 -1.17 6.00 16 15 N -0.72 -14.09 5.56 -59.97 -0.33 -14.43 16 16 C 0.12 1.82 5.07 -4.04 -0.02 1.80 16 17 C 0.06 0.74 3.00 -26.73 -0.08 0.66 16 18 H 0.15 1.68 8.14 -51.93 -0.42 1.26 16 19 O -0.53 -6.47 13.23 -35.23 -0.47 -6.94 16 20 C 0.43 5.11 2.85 37.15 0.11 5.22 16 21 F -0.18 -2.27 16.71 2.25 0.04 -2.24 16 22 F -0.18 -2.21 17.26 2.25 0.04 -2.17 16 23 F -0.18 -2.21 16.51 2.25 0.04 -2.17 16 24 N -0.53 -12.39 9.44 -8.11 -0.08 -12.46 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.13 3.27 6.28 -52.48 -0.33 2.94 16 30 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 31 H 0.41 7.77 6.67 -40.82 -0.27 7.50 16 32 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 33 H 0.07 1.19 7.66 -51.93 -0.40 0.80 16 34 H 0.39 3.66 8.69 45.56 0.40 4.05 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -27.99 306.53 -6.26 -34.25 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -2.61 Total: 12.85 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.08 Total: -4.99 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.20 Total: -46.26 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.47 Total: -6.94 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.99 -6.26 -34.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158543521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.131 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds