Wall clock time and date at job start Tue Mar 31 2020 07:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38689 * 119.27546 * 2 1 4 4 C 1.38012 * 119.62335 * 179.73787 * 3 2 1 5 5 C 1.40999 * 118.28107 * 0.50501 * 4 3 2 6 6 C 1.41025 * 120.70462 * 179.75272 * 5 4 3 7 7 H 1.07998 * 120.00038 * 154.71674 * 6 5 4 8 8 C 1.39953 * 119.99480 * 334.43830 * 6 5 4 9 9 N 1.30859 * 120.00401 * 343.99319 * 8 6 5 10 10 Si 1.86800 * 119.99429 * 163.99302 * 8 6 5 11 11 H 1.48494 * 109.47566 * 60.00060 * 10 8 6 12 12 H 1.48504 * 109.46896 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47262 * 299.99910 * 10 8 6 14 14 C 1.41705 * 118.59126 * 359.48110 * 5 4 3 15 15 N 1.38091 * 119.90582 * 180.25493 * 14 5 4 16 16 C 1.46494 * 119.99811 * 179.97438 * 15 14 5 17 17 C 1.53006 * 109.47199 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.46864 * 304.99746 * 17 16 15 19 19 O 1.42891 * 109.46828 * 64.99731 * 17 16 15 20 20 C 1.52994 * 109.47143 * 185.00026 * 17 16 15 21 21 F 1.39900 * 109.47534 * 60.00252 * 20 17 16 22 22 F 1.39898 * 109.47157 * 180.02562 * 20 17 16 23 23 F 1.39904 * 109.47233 * 299.99753 * 20 17 16 24 24 N 1.31962 * 119.28000 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46998 * 270.02186 * 1 2 3 26 26 H 1.09004 * 109.46999 * 30.01527 * 1 2 3 27 27 H 1.08995 * 109.47377 * 150.02207 * 1 2 3 28 28 H 1.07997 * 120.18539 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.85454 * 180.25640 * 4 3 2 30 30 H 0.97007 * 120.00501 * 180.02562 * 9 8 6 31 31 H 0.96994 * 119.99986 * 359.97438 * 15 14 5 32 32 H 1.08997 * 109.47163 * 299.99639 * 16 15 14 33 33 H 1.09007 * 109.47438 * 59.99555 * 16 15 14 34 34 H 0.96699 * 114.00252 * 60.00627 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2098 0.0000 4 6 3.5652 1.2181 0.0055 5 6 4.2408 -0.0194 0.0000 6 6 5.6502 -0.0705 0.0000 7 1 6.1591 -0.9370 0.3956 8 6 6.3890 0.9993 -0.5181 9 7 5.8047 1.8921 -1.2756 10 14 8.2094 1.1525 -0.1282 11 1 8.9248 -0.0508 -0.6235 12 1 8.7575 2.3629 -0.7915 13 1 8.3931 1.2678 1.3409 14 6 3.4737 -1.2109 0.0004 15 7 4.1074 -2.4378 0.0005 16 6 3.3163 -3.6707 0.0015 17 6 4.2550 -4.8790 0.0006 18 1 4.9424 -4.8044 -0.8419 19 8 4.9981 -4.9056 1.2208 20 6 3.4329 -6.1633 -0.1241 21 9 2.7054 -6.1373 -1.3187 22 9 4.2912 -7.2681 -0.1242 23 9 2.5505 -6.2591 0.9574 24 7 2.1523 -1.1510 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6364 2.1399 0.0004 29 1 4.1135 2.1487 0.0097 30 1 6.3169 2.6334 -1.6350 31 1 5.0763 -2.4832 -0.0002 32 1 2.6883 -3.6988 0.8919 33 1 2.6869 -3.6994 -0.8881 34 1 4.4492 -4.9713 2.0143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158543521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:18 Heat of formation + Delta-G solvation = -198.597680 kcal Electronic energy + Delta-G solvation = -23249.271681 eV Core-core repulsion = 19151.699611 eV Total energy + Delta-G solvation = -4097.572070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.21658 -48.72410 -48.69452 -40.49407 -38.93242 -36.17311 -35.85456 -32.80736 -32.15449 -30.52961 -29.36472 -26.76054 -25.40609 -23.54840 -22.58836 -22.35837 -19.73707 -19.68352 -19.37753 -19.11009 -18.03662 -17.20922 -16.83496 -16.76343 -16.12467 -15.56898 -15.53178 -15.41884 -15.12260 -15.05226 -15.02918 -14.83928 -14.77407 -14.40293 -14.17779 -13.98484 -13.66955 -13.31941 -13.17485 -12.97419 -12.76478 -12.58817 -12.49282 -12.16031 -11.69447 -11.49572 -11.07226 -10.65539 -9.97004 -9.77771 -8.64488 -8.32297 -6.12475 0.91857 1.21717 1.42155 1.46983 1.51469 1.55613 2.23339 2.37585 2.62020 2.81854 2.83664 3.03380 3.33020 3.58924 3.76456 3.92581 4.16667 4.52886 4.59388 4.67390 4.74615 4.95661 5.00623 5.06753 5.18237 5.27363 5.43389 5.78082 5.90817 6.14205 6.28783 6.38404 6.75113 6.80981 6.91213 7.11519 7.91248 8.39683 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.005393 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.240628 B = 5190.407676 C = 6817.375120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.020 3.980 3 C -0.196 4.196 4 C -0.146 4.146 5 C -0.001 4.001 6 C -0.480 4.480 7 H 0.083 0.917 8 C 0.035 3.965 9 N -0.832 5.832 10 Si 0.978 3.022 11 H -0.258 1.258 12 H -0.274 1.274 13 H -0.264 1.264 14 C 0.298 3.702 15 N -0.717 5.717 16 C 0.119 3.881 17 C 0.074 3.926 18 H 0.156 0.844 19 O -0.533 6.533 20 C 0.434 3.566 21 F -0.181 7.181 22 F -0.177 7.177 23 F -0.181 7.181 24 N -0.539 5.539 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.285 0.715 31 H 0.410 0.590 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -10.741 2.401 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.115 4.115 3 C -0.218 4.218 4 C -0.172 4.172 5 C -0.008 4.008 6 C -0.511 4.511 7 H 0.101 0.899 8 C -0.179 4.179 9 N -0.459 5.459 10 Si 0.800 3.200 11 H -0.182 1.182 12 H -0.199 1.199 13 H -0.188 1.188 14 C 0.060 3.940 15 N -0.357 5.357 16 C -0.007 4.007 17 C 0.012 3.988 18 H 0.173 0.827 19 O -0.340 6.340 20 C 0.379 3.621 21 F -0.162 7.162 22 F -0.159 7.159 23 F -0.163 7.163 24 N -0.257 5.257 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.248 0.752 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.276 -11.378 1.862 11.752 hybrid contribution 0.923 0.897 0.262 1.313 sum -1.353 -10.481 2.125 10.779 Atomic orbital electron populations 1.20343 0.88257 1.02162 1.01888 1.20757 0.96706 0.87450 1.06548 1.21488 0.94760 0.98142 1.07448 1.21375 0.93259 0.97794 1.04792 1.18234 0.94783 0.90825 0.96941 1.19379 0.90908 1.03993 1.36818 0.89930 1.26629 1.05117 0.94171 0.91971 1.69869 1.40396 1.11811 1.23828 0.85303 0.76590 0.78752 0.79400 1.18173 1.19907 1.18813 1.18590 0.88237 0.86185 1.00981 1.43424 1.07748 1.00407 1.84154 1.21524 0.93065 0.83280 1.02834 1.23280 0.94614 0.88258 0.92605 0.82657 1.86688 1.36438 1.95643 1.15240 1.21335 0.79106 0.87747 0.73880 1.93207 1.79063 1.96724 1.47229 1.93207 1.69928 1.56595 1.96125 1.93191 1.70738 1.96753 1.55616 1.66488 1.08074 1.30418 1.20763 0.91429 0.90783 0.92147 0.86576 0.87335 0.90426 0.75244 0.91631 0.91714 0.74962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.15 71.23 0.72 -1.58 16 2 C 0.02 0.88 6.79 42.65 0.29 1.17 16 3 C -0.20 -9.12 9.69 22.32 0.22 -8.91 16 4 C -0.15 -7.60 8.79 22.89 0.20 -7.40 16 5 C 0.00 -0.05 5.59 -21.06 -0.12 -0.16 16 6 C -0.48 -24.20 8.52 23.37 0.20 -24.00 16 7 H 0.08 3.88 6.68 -2.91 -0.02 3.86 16 8 C 0.04 1.70 5.19 85.25 0.44 2.15 16 9 N -0.83 -42.66 10.96 21.83 0.24 -42.42 16 10 Si 0.98 37.04 29.59 68.60 2.03 39.07 16 11 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 12 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 13 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 14 C 0.30 14.17 7.52 134.05 1.01 15.18 16 15 N -0.72 -27.64 5.56 -343.65 -1.91 -29.55 16 16 C 0.12 3.59 5.07 86.38 0.44 4.02 16 17 C 0.07 1.72 3.00 30.59 0.09 1.81 16 18 H 0.16 3.30 8.14 -2.39 -0.02 3.28 16 19 O -0.53 -12.05 13.23 -148.98 -1.97 -14.02 16 20 C 0.43 9.63 2.85 71.98 0.21 9.83 16 21 F -0.18 -4.35 16.71 44.97 0.75 -3.60 16 22 F -0.18 -4.01 17.26 44.97 0.78 -3.24 16 23 F -0.18 -4.06 16.51 44.97 0.74 -3.32 16 24 N -0.54 -24.98 9.44 -179.58 -1.70 -26.67 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 29 H 0.11 5.91 6.28 -2.91 -0.02 5.89 16 30 H 0.29 13.40 8.30 -92.70 -0.77 12.63 16 31 H 0.41 15.41 6.67 -92.71 -0.62 14.79 16 32 H 0.07 2.01 7.94 -2.39 -0.02 1.99 16 33 H 0.06 2.08 7.66 -2.38 -0.02 2.07 16 34 H 0.40 6.75 8.69 -74.06 -0.64 6.11 16 Total: -1.00 -59.96 306.53 2.57 -57.39 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.09 Total: 34.25 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 3.70 Total: -7.89 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -3.36 Total: -98.64 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.97 Total: -14.02 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 2.27 Total: -10.15 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -59.96 2.57 -57.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158543521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.213 kcal (2) G-P(sol) polarization free energy of solvation -59.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds