Wall clock time and date at job start Tue Mar 31 2020 06:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48500 * 109.46917 * 240.00323 * 3 2 1 5 5 H 1.48505 * 109.46911 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47398 * 119.99888 * 3 2 1 7 7 C 1.40029 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00616 * 197.29120 * 7 2 1 9 9 C 1.41559 * 119.99752 * 17.29664 * 7 2 1 10 10 C 1.41184 * 120.99206 * 23.16155 * 9 7 2 11 11 C 1.36566 * 119.14525 * 180.02562 * 10 9 7 12 12 N 1.32095 * 121.26610 * 359.72265 * 11 10 9 13 13 C 1.32537 * 122.21663 * 0.57352 * 12 11 10 14 14 N 1.39074 * 119.65713 * 179.70418 * 13 12 11 15 15 C 1.46500 * 120.00260 * 179.72666 * 14 13 12 16 16 C 1.53001 * 109.47538 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47129 * 180.02562 * 16 15 14 18 18 C 1.33326 * 125.95612 * 90.00115 * 17 16 15 19 19 N 1.32121 * 114.58409 * 179.97438 * 18 17 16 20 20 C 1.29686 * 116.86191 * 359.97438 * 19 18 17 21 21 N 1.38614 * 124.94513 * 179.97438 * 20 19 18 22 22 S 1.70959 * 110.10331 * 0.24679 * 20 19 18 23 23 C 1.38750 * 120.68404 * 359.42995 * 13 12 11 24 24 H 0.97001 * 119.99704 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.43198 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.36460 * 180.02562 * 11 10 9 27 27 H 0.97004 * 120.00145 * 359.73248 * 14 13 12 28 28 H 1.08998 * 109.46869 * 59.99788 * 15 14 13 29 29 H 1.09002 * 109.47238 * 300.00263 * 15 14 13 30 30 H 1.08995 * 109.47052 * 59.99964 * 16 15 14 31 31 H 1.09002 * 109.46761 * 300.00175 * 16 15 14 32 32 H 1.08008 * 122.70965 * 0.02562 * 18 17 16 33 33 H 0.97000 * 120.00222 * 0.03295 * 21 20 19 34 34 H 0.96996 * 119.99946 * 179.74696 * 21 20 19 35 35 H 1.07995 * 120.66279 * 180.29906 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6964 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0509 -1.2338 0.2785 9 6 1.3478 -2.4110 -0.3634 10 6 0.1896 -2.3870 -1.1705 11 6 -0.4171 -3.5657 -1.4985 12 7 0.0622 -4.7232 -1.0798 13 6 1.1420 -4.8061 -0.3157 14 7 1.5969 -6.0529 0.0999 15 6 2.7931 -6.1537 0.9396 16 6 3.0747 -7.6248 1.2518 17 6 4.3048 -7.7283 2.1160 18 6 4.3287 -7.7123 3.4490 19 7 5.5345 -7.8187 3.9785 20 6 6.5295 -7.9243 3.1535 21 7 7.8596 -8.0441 3.5249 22 16 5.9625 -7.8866 1.5411 23 6 1.8265 -3.6622 0.0691 24 1 -0.4850 0.8401 0.0004 25 1 -0.2118 -1.4485 -1.5234 26 1 -1.3030 -3.5514 -2.1161 27 1 1.1221 -6.8559 -0.1663 28 1 2.6310 -5.6090 1.8697 29 1 3.6449 -5.7252 0.4114 30 1 3.2370 -8.1690 0.3215 31 1 2.2229 -8.0536 1.7798 32 1 3.4344 -7.6206 4.0477 33 1 8.1019 -8.0538 4.4641 34 1 8.5476 -8.1224 2.8457 35 1 2.7091 -3.7305 0.6877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160379403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:10 Heat of formation + Delta-G solvation = 71.545426 kcal Electronic energy + Delta-G solvation = -19188.812960 eV Core-core repulsion = 16119.857537 eV Total energy + Delta-G solvation = -3068.955423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.71633 -38.42544 -36.03997 -34.78764 -33.89978 -31.89413 -30.55910 -28.43212 -26.56429 -25.85054 -24.47326 -22.80958 -21.14503 -20.61037 -20.10026 -18.87032 -17.61394 -16.38288 -16.15857 -15.85832 -15.26023 -14.91183 -14.73955 -14.45213 -14.38869 -13.96523 -13.46690 -13.08071 -12.62309 -12.52471 -12.26516 -11.88645 -11.75482 -11.36935 -11.15017 -10.98022 -10.85760 -10.76760 -10.28726 -9.78643 -9.69710 -9.38017 -9.26809 -8.89374 -7.98313 -7.92404 -7.87018 -6.80749 -6.42703 -4.52265 0.88604 1.00170 1.66157 2.84044 2.88505 3.04849 3.07557 3.11062 3.22651 3.39354 3.89868 4.06572 4.74145 4.78100 5.05123 5.10176 5.23571 5.58418 5.70640 5.83630 6.03441 6.07517 6.21199 6.26658 6.63947 6.81250 6.93905 6.97775 7.00087 7.04287 7.31282 7.59822 7.85745 7.86742 8.08469 8.13992 8.47987 8.74506 8.87201 8.94317 9.81637 10.14106 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.003447 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.777334 B = 8121.244589 C = 9346.824909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.080 3.920 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.156 3.844 10 C -0.246 4.246 11 C 0.116 3.884 12 N -0.625 5.625 13 C 0.398 3.602 14 N -0.746 5.746 15 C 0.147 3.853 16 C -0.044 4.044 17 C -0.245 4.245 18 C 0.083 3.917 19 N -0.550 5.550 20 C 0.308 3.692 21 N -0.822 5.822 22 S 0.100 5.900 23 C -0.335 4.335 24 H 0.282 0.718 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.389 0.611 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.410 0.590 34 H 0.413 0.587 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.754 -12.608 4.115 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.148 3.852 10 C -0.271 4.271 11 C -0.034 4.034 12 N -0.348 5.348 13 C 0.167 3.833 14 N -0.383 5.383 15 C 0.020 3.980 16 C -0.084 4.084 17 C -0.369 4.369 18 C -0.067 4.067 19 N -0.275 5.275 20 C -0.064 4.064 21 N -0.375 5.375 22 S 0.347 5.653 23 C -0.362 4.362 24 H 0.093 0.907 25 H 0.141 0.859 26 H 0.135 0.865 27 H 0.223 0.777 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.242 0.758 34 H 0.244 0.756 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.833 -13.187 3.587 18.077 hybrid contribution 0.284 1.400 0.920 1.699 sum 12.117 -11.788 4.507 17.495 Atomic orbital electron populations 1.69801 1.07697 1.29459 1.33923 1.25957 0.94720 1.01410 0.91914 0.86344 0.80175 0.80016 0.80062 1.18716 1.20228 1.18929 1.19558 0.97953 0.90958 1.40379 0.90342 1.17589 0.89879 0.91609 0.86138 1.21788 1.01499 0.98138 1.05677 1.21352 0.97236 0.87880 0.96911 1.66741 1.16562 1.29763 1.21773 1.17913 0.90113 0.84511 0.90745 1.44053 1.30514 1.05456 1.58274 1.21076 0.88037 0.94138 0.94700 1.20074 0.92590 0.97475 0.98267 1.25124 0.96651 1.17953 0.97141 1.21345 0.94464 0.99472 0.91373 1.66423 0.98406 1.26156 1.36555 1.23538 0.90663 0.98697 0.93545 1.41495 1.01482 1.82987 1.11520 1.84008 1.01824 1.73221 1.06225 1.21132 1.07428 0.92205 1.15428 0.90680 0.85913 0.86460 0.77728 0.92430 0.92811 0.90405 0.89333 0.80756 0.75832 0.75631 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.23 10.90 55.55 0.61 -19.62 16 2 C 0.08 2.00 5.20 -17.34 -0.09 1.91 16 3 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.29 9.12 -37.65 -0.34 -12.63 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.16 4.28 5.61 -106.55 -0.60 3.68 16 10 C -0.25 -6.58 8.75 -39.07 -0.34 -6.92 16 11 C 0.12 2.88 11.10 -18.04 -0.20 2.68 16 12 N -0.62 -15.53 10.37 -12.82 -0.13 -15.67 16 13 C 0.40 9.47 7.65 -154.98 -1.19 8.29 16 14 N -0.75 -13.89 5.73 -60.47 -0.35 -14.24 16 15 C 0.15 2.28 4.87 -4.04 -0.02 2.26 16 16 C -0.04 -0.51 5.86 -27.89 -0.16 -0.67 16 17 C -0.25 -2.91 5.83 -36.03 -0.21 -3.12 16 18 C 0.08 1.02 11.24 -19.14 -0.22 0.81 16 19 N -0.55 -7.16 10.60 -15.21 -0.16 -7.32 16 20 C 0.31 3.36 8.58 -87.68 -0.75 2.61 16 21 N -0.82 -5.78 9.08 29.77 0.27 -5.51 16 22 S 0.10 1.05 23.21 -107.50 -2.50 -1.44 16 23 C -0.33 -8.54 9.12 -38.43 -0.35 -8.89 16 24 H 0.28 6.59 8.29 -40.82 -0.34 6.26 16 25 H 0.12 3.32 6.16 -52.49 -0.32 2.99 16 26 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 27 H 0.39 6.52 8.60 -40.82 -0.35 6.17 16 28 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 29 H 0.05 0.89 7.93 -51.93 -0.41 0.48 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.18 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.41 2.41 8.95 -40.82 -0.37 2.05 16 34 H 0.41 1.79 8.95 -40.82 -0.37 1.42 16 35 H 0.10 2.34 6.71 -52.49 -0.35 1.98 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -31.62 317.56 -10.80 -42.42 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -3.82 Total: 13.07 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -4.47 Total: -10.00 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.24 Total: -62.36 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.44 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.62 -10.80 -42.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160379403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.961 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds