Wall clock time and date at job start Tue Mar 31 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48500 * 109.46917 * 240.00323 * 3 2 1 5 5 H 1.48505 * 109.46911 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47398 * 119.99888 * 3 2 1 7 7 C 1.40029 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00616 * 197.29120 * 7 2 1 9 9 C 1.41559 * 119.99752 * 17.29664 * 7 2 1 10 10 C 1.41184 * 120.99206 * 23.16155 * 9 7 2 11 11 C 1.36566 * 119.14525 * 180.02562 * 10 9 7 12 12 N 1.32095 * 121.26610 * 359.72265 * 11 10 9 13 13 C 1.32537 * 122.21663 * 0.57352 * 12 11 10 14 14 N 1.39074 * 119.65713 * 179.70418 * 13 12 11 15 15 C 1.46500 * 120.00260 * 179.72666 * 14 13 12 16 16 C 1.53001 * 109.47538 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47129 * 180.02562 * 16 15 14 18 18 C 1.33326 * 125.95612 * 90.00115 * 17 16 15 19 19 N 1.32121 * 114.58409 * 179.97438 * 18 17 16 20 20 C 1.29686 * 116.86191 * 359.97438 * 19 18 17 21 21 N 1.38614 * 124.94513 * 179.97438 * 20 19 18 22 22 S 1.70959 * 110.10331 * 0.24679 * 20 19 18 23 23 C 1.38750 * 120.68404 * 359.42995 * 13 12 11 24 24 H 0.97001 * 119.99704 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.43198 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.36460 * 180.02562 * 11 10 9 27 27 H 0.97004 * 120.00145 * 359.73248 * 14 13 12 28 28 H 1.08998 * 109.46869 * 59.99788 * 15 14 13 29 29 H 1.09002 * 109.47238 * 300.00263 * 15 14 13 30 30 H 1.08995 * 109.47052 * 59.99964 * 16 15 14 31 31 H 1.09002 * 109.46761 * 300.00175 * 16 15 14 32 32 H 1.08008 * 122.70965 * 0.02562 * 18 17 16 33 33 H 0.97000 * 120.00222 * 0.03295 * 21 20 19 34 34 H 0.96996 * 119.99946 * 179.74696 * 21 20 19 35 35 H 1.07995 * 120.66279 * 180.29906 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6964 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0509 -1.2338 0.2785 9 6 1.3478 -2.4110 -0.3634 10 6 0.1896 -2.3870 -1.1705 11 6 -0.4171 -3.5657 -1.4985 12 7 0.0622 -4.7232 -1.0798 13 6 1.1420 -4.8061 -0.3157 14 7 1.5969 -6.0529 0.0999 15 6 2.7931 -6.1537 0.9396 16 6 3.0747 -7.6248 1.2518 17 6 4.3048 -7.7283 2.1160 18 6 4.3287 -7.7123 3.4490 19 7 5.5345 -7.8187 3.9785 20 6 6.5295 -7.9243 3.1535 21 7 7.8596 -8.0441 3.5249 22 16 5.9625 -7.8866 1.5411 23 6 1.8265 -3.6622 0.0691 24 1 -0.4850 0.8401 0.0004 25 1 -0.2118 -1.4485 -1.5234 26 1 -1.3030 -3.5514 -2.1161 27 1 1.1221 -6.8559 -0.1663 28 1 2.6310 -5.6090 1.8697 29 1 3.6449 -5.7252 0.4114 30 1 3.2370 -8.1690 0.3215 31 1 2.2229 -8.0536 1.7798 32 1 3.4344 -7.6206 4.0477 33 1 8.1019 -8.0538 4.4641 34 1 8.5476 -8.1224 2.8457 35 1 2.7091 -3.7305 0.6877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160379403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:09 Heat of formation + Delta-G solvation = 50.725874 kcal Electronic energy + Delta-G solvation = -19189.715764 eV Core-core repulsion = 16119.857537 eV Total energy + Delta-G solvation = -3069.858227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60950 -40.26907 -37.40307 -36.00988 -35.46403 -33.14580 -32.51240 -29.98939 -27.84025 -27.80577 -25.47957 -24.10380 -22.95336 -22.36146 -20.99318 -19.74030 -19.40109 -17.75425 -17.22191 -16.98762 -16.84093 -16.45903 -15.96346 -15.71108 -15.67750 -15.39796 -14.98348 -14.75997 -14.29159 -14.18170 -13.48159 -13.24242 -13.09611 -12.87558 -12.81670 -12.68185 -12.00307 -11.93851 -11.74289 -11.65144 -11.23599 -10.63069 -10.57980 -10.12326 -9.92140 -9.83811 -8.78092 -8.69951 -8.22808 -6.54833 0.01909 0.17964 0.80454 0.98925 1.20155 1.38747 1.50918 1.62157 1.98366 2.19358 2.51613 2.60821 2.81106 3.83119 3.97705 4.08239 4.08379 4.16036 4.27710 4.56977 4.69144 4.92497 4.94924 5.03959 5.07013 5.08242 5.20591 5.23572 5.32563 5.63540 5.91426 6.00097 6.13112 6.36805 6.39136 6.56418 6.87380 6.92331 7.08442 7.09215 7.89498 8.27229 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.003447 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.777334 B = 8121.244589 C = 9346.824909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.492 4.492 8 H 0.077 0.923 9 C 0.128 3.872 10 C -0.273 4.273 11 C 0.117 3.883 12 N -0.633 5.633 13 C 0.399 3.601 14 N -0.731 5.731 15 C 0.148 3.852 16 C -0.028 4.028 17 C -0.263 4.263 18 C 0.077 3.923 19 N -0.583 5.583 20 C 0.305 3.695 21 N -0.805 5.805 22 S 0.118 5.882 23 C -0.358 4.358 24 H 0.292 0.708 25 H 0.113 0.887 26 H 0.146 0.854 27 H 0.401 0.599 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.184 0.816 33 H 0.417 0.583 34 H 0.427 0.573 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.796 -12.968 4.246 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.522 4.522 8 H 0.095 0.905 9 C 0.120 3.880 10 C -0.298 4.298 11 C -0.033 4.033 12 N -0.357 5.357 13 C 0.166 3.834 14 N -0.368 5.368 15 C 0.023 3.977 16 C -0.068 4.068 17 C -0.387 4.387 18 C -0.073 4.073 19 N -0.309 5.309 20 C -0.068 4.068 21 N -0.359 5.359 22 S 0.365 5.635 23 C -0.385 4.385 24 H 0.103 0.897 25 H 0.130 0.870 26 H 0.163 0.837 27 H 0.237 0.763 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.201 0.799 33 H 0.250 0.750 34 H 0.260 0.740 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.922 -13.608 3.729 19.132 hybrid contribution 0.016 1.423 0.925 1.697 sum 12.937 -12.184 4.654 18.371 Atomic orbital electron populations 1.69842 1.09172 1.31072 1.33513 1.26855 0.95523 1.04669 0.90712 0.85193 0.78825 0.75185 0.80159 1.18313 1.18734 1.18334 1.19849 0.98231 0.92178 1.41956 0.90462 1.17994 0.90592 0.92720 0.86684 1.21770 1.02363 0.98436 1.07212 1.21767 0.97645 0.87453 0.96386 1.66906 1.17000 1.29477 1.22351 1.18177 0.89427 0.85999 0.89768 1.44112 1.30988 1.04122 1.57542 1.21176 0.86270 0.97008 0.93274 1.19918 0.93321 0.94468 0.99103 1.25127 0.97324 1.19140 0.97121 1.21578 0.94846 0.99045 0.91822 1.66460 0.99003 1.28011 1.37472 1.23837 0.91559 0.97673 0.93760 1.41572 1.00449 1.81292 1.12568 1.83885 1.00942 1.73077 1.05577 1.21230 1.08201 0.92523 1.16498 0.89680 0.86951 0.83696 0.76319 0.93652 0.93840 0.89139 0.87753 0.79919 0.74972 0.74002 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.26 10.90 21.84 0.24 -42.03 16 2 C 0.04 2.01 5.20 85.29 0.44 2.46 16 3 Si 0.99 37.76 29.59 68.60 2.03 39.79 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 7 C -0.49 -27.05 9.12 23.52 0.21 -26.84 16 8 H 0.08 4.10 7.90 -2.91 -0.02 4.07 16 9 C 0.13 7.23 5.61 -21.12 -0.12 7.11 16 10 C -0.27 -14.91 8.75 22.60 0.20 -14.71 16 11 C 0.12 5.84 11.10 84.26 0.94 6.78 16 12 N -0.63 -31.23 10.37 -194.46 -2.02 -33.24 16 13 C 0.40 18.98 7.65 132.90 1.02 19.99 16 14 N -0.73 -26.56 5.73 -345.24 -1.98 -28.54 16 15 C 0.15 4.50 4.87 86.38 0.42 4.92 16 16 C -0.03 -0.60 5.86 29.85 0.17 -0.43 16 17 C -0.26 -5.92 5.83 24.57 0.14 -5.77 16 18 C 0.08 1.83 11.24 83.54 0.94 2.76 16 19 N -0.58 -14.61 10.60 -202.02 -2.14 -16.75 16 20 C 0.30 6.21 8.58 179.32 1.54 7.75 16 21 N -0.80 -9.83 9.08 -59.73 -0.54 -10.38 16 22 S 0.12 2.31 23.21 -56.49 -1.31 1.00 16 23 C -0.36 -18.63 9.12 23.01 0.21 -18.42 16 24 H 0.29 13.62 8.29 -92.71 -0.77 12.85 16 25 H 0.11 6.26 6.16 -2.91 -0.02 6.24 16 26 H 0.15 6.23 8.06 -2.91 -0.02 6.20 16 27 H 0.40 12.75 8.60 -92.70 -0.80 11.96 16 28 H 0.05 1.51 7.93 -2.39 -0.02 1.49 16 29 H 0.04 1.43 7.93 -2.39 -0.02 1.41 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.42 4.15 8.95 -92.71 -0.83 3.32 16 34 H 0.43 2.78 8.95 -92.71 -0.83 1.95 16 35 H 0.10 4.94 6.71 -2.91 -0.02 4.93 16 Total: -1.00 -68.44 317.56 -0.90 -69.34 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -1.29 Total: 35.21 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 6.11 Total: -14.40 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -6.44 Total: -130.94 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -68.44 -0.90 -69.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160379403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.064 kcal (2) G-P(sol) polarization free energy of solvation -68.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds