Wall clock time and date at job start Tue Mar 31 2020 07:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47057 * 2 1 4 4 H 1.09003 * 109.46417 * 304.99515 * 3 2 1 5 5 C 1.50702 * 109.47177 * 184.99712 * 3 2 1 6 6 H 1.07995 * 119.99928 * 240.00297 * 5 3 2 7 7 C 1.37876 * 119.99865 * 59.99451 * 5 3 2 8 8 N 1.31512 * 120.00276 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99581 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47416 * 90.00628 * 9 7 5 11 11 H 1.48501 * 109.46759 * 210.00238 * 9 7 5 12 12 H 1.48505 * 109.47322 * 329.99907 * 9 7 5 13 13 N 1.46501 * 109.47143 * 64.99549 * 3 2 1 14 14 C 1.38429 * 119.99976 * 275.00001 * 13 3 2 15 15 N 1.31968 * 120.14010 * 359.72275 * 14 13 3 16 16 C 1.32658 * 122.63689 * 180.27485 * 15 14 13 17 17 C 1.36056 * 121.99357 * 0.02562 * 16 15 14 18 18 C 1.40864 * 118.85916 * 0.02562 * 17 16 15 19 19 C 1.40143 * 122.16699 * 179.97438 * 18 17 16 20 20 C 1.36409 * 119.46863 * 180.02562 * 19 18 17 21 21 Cl 1.73595 * 119.52468 * 179.97438 * 20 19 18 22 22 C 1.39399 * 120.94667 * 0.02562 * 20 19 18 23 23 C 1.36274 * 121.02960 * 359.95606 * 22 20 19 24 24 C 1.40105 * 119.54872 * 0.04230 * 23 22 20 25 25 H 1.08991 * 109.47579 * 300.00539 * 1 2 3 26 26 H 1.09000 * 109.47059 * 60.00670 * 1 2 3 27 27 H 1.09002 * 109.46972 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47579 * 239.99461 * 2 1 3 29 29 H 1.09005 * 109.46751 * 119.99656 * 2 1 3 30 30 H 0.96997 * 120.00294 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00199 * 95.00613 * 13 3 2 32 32 H 1.08004 * 119.00123 * 180.02562 * 16 15 14 33 33 H 1.08003 * 120.57044 * 179.97438 * 17 16 15 34 34 H 1.07995 * 120.26432 * 0.04768 * 19 18 17 35 35 H 1.08005 * 119.48798 * 179.97438 * 22 20 19 36 36 H 1.07994 * 120.22366 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3373 -2.1731 9 14 6.0050 0.8800 -1.3808 10 1 6.5539 -0.3519 -0.7595 11 1 6.3836 0.9214 -2.8161 12 1 6.5576 2.0721 -0.6886 13 7 1.6523 2.0976 1.2518 14 6 0.4020 2.6798 1.3699 15 7 -0.4409 2.6513 0.3549 16 6 -1.6483 3.1978 0.4119 17 6 -2.1016 3.8293 1.5285 18 6 -1.2608 3.9038 2.6562 19 6 -1.6569 4.5379 3.8416 20 6 -0.7978 4.5783 4.9004 21 17 -1.2866 5.3639 6.3692 22 6 0.4674 3.9986 4.8195 23 6 0.8826 3.3743 3.6816 24 6 0.0259 3.3141 2.5746 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.8294 -0.0606 -2.9500 31 1 2.2718 2.1233 1.9978 32 1 -2.2908 3.1396 -0.4542 33 1 -3.0889 4.2667 1.5496 34 1 -2.6345 4.9907 3.9163 35 1 1.1288 4.0447 5.6721 36 1 1.8653 2.9292 3.6333 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:36 Heat of formation + Delta-G solvation = 33.276533 kcal Electronic energy + Delta-G solvation = -20378.331886 eV Core-core repulsion = 17273.380542 eV Total energy + Delta-G solvation = -3104.951344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -41.81299 -38.95942 -37.74468 -37.04891 -35.02540 -33.35984 -32.44020 -31.40801 -30.17432 -28.35493 -25.14938 -24.82062 -24.32317 -22.64711 -21.51498 -19.59384 -18.78219 -18.07918 -17.57720 -16.81614 -16.56708 -16.03718 -15.84637 -15.47687 -15.05962 -14.69559 -14.60638 -14.40814 -13.76625 -13.69430 -13.42584 -13.20896 -13.08200 -12.85128 -12.67989 -12.38691 -12.22727 -12.15057 -12.03139 -11.82133 -11.55576 -11.39099 -10.95640 -10.51593 -10.09306 -9.98558 -9.71719 -8.17456 -8.10004 -6.30697 -0.40515 -0.05759 1.06630 1.10215 1.43952 1.44947 1.54460 2.10949 2.34537 2.59571 3.14685 3.24686 3.61621 3.76548 3.86795 4.05162 4.15460 4.26407 4.45998 4.59201 4.64545 4.76232 4.83539 4.87854 4.93834 5.13326 5.15692 5.22504 5.32338 5.35319 5.52074 5.59177 5.63358 5.71862 5.89068 5.93255 6.13423 6.41277 6.76441 6.84097 7.38014 7.60088 8.90111 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.004145 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.475125 B = 6753.058781 C = 7603.970509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 C 0.289 3.711 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.688 5.688 14 C 0.432 3.568 15 N -0.583 5.583 16 C 0.132 3.868 17 C -0.243 4.243 18 C 0.013 3.987 19 C -0.116 4.116 20 C -0.008 4.008 21 Cl -0.062 7.062 22 C -0.138 4.138 23 C -0.063 4.063 24 C -0.171 4.171 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.284 7.428 13.279 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.082 0.918 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.315 5.315 14 C 0.183 3.817 15 N -0.305 5.305 16 C -0.015 4.015 17 C -0.266 4.266 18 C 0.008 3.992 19 C -0.135 4.135 20 C -0.036 4.036 21 Cl -0.033 7.033 22 C -0.157 4.157 23 C -0.083 4.083 24 C -0.177 4.177 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.183 0.817 33 H 0.178 0.822 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.042 6.910 12.239 16.712 hybrid contribution 0.939 0.212 0.568 1.118 sum -8.103 7.122 12.808 16.746 Atomic orbital electron populations 1.21634 0.96511 0.98459 1.00702 1.21781 0.94266 0.99267 1.00583 1.18377 0.92925 0.89011 0.81092 0.96572 1.21594 0.91957 1.38948 1.06557 0.91776 1.25643 1.02782 0.94447 0.95080 1.70024 1.36764 1.38247 1.09752 0.85473 0.79785 0.78657 0.77177 1.19896 1.21124 1.19269 1.45178 1.11754 1.56863 1.17746 1.18823 0.86929 0.87412 0.88521 1.67345 1.06026 1.26693 1.30469 1.22276 0.90470 0.90586 0.98122 1.21616 1.02516 1.08910 0.93596 1.18002 0.92040 0.94413 0.94785 1.20947 1.00942 1.00971 0.90632 1.20799 0.95473 0.98661 0.88632 1.98370 1.91458 1.78883 1.34569 1.20808 0.95416 1.00123 0.99395 1.20949 0.99124 0.96804 0.91446 1.18698 0.97446 1.06255 0.95322 0.94238 0.93839 0.94715 0.91084 0.95347 0.92633 0.75814 0.81739 0.82212 0.82230 0.82793 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.45 71.98 0.61 -4.33 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.59 16 3 C 0.29 14.29 2.25 44.25 0.10 14.39 16 4 H 0.02 0.94 7.54 -2.39 -0.02 0.92 16 5 C -0.55 -28.85 8.73 25.60 0.22 -28.62 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -50.83 11.29 21.45 0.24 -50.59 16 9 Si 0.96 41.78 29.54 68.60 2.03 43.80 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 N -0.69 -28.11 5.08 -327.04 -1.66 -29.77 16 14 C 0.43 16.47 6.07 133.91 0.81 17.29 16 15 N -0.58 -22.84 6.43 -193.33 -1.24 -24.08 16 16 C 0.13 4.10 11.06 84.06 0.93 5.03 16 17 C -0.24 -6.37 9.87 22.41 0.22 -6.15 16 18 C 0.01 0.37 5.74 -21.30 -0.12 0.25 16 19 C -0.12 -2.64 9.56 22.31 0.21 -2.42 16 20 C -0.01 -0.17 6.28 22.12 0.14 -0.03 16 21 Cl -0.06 -1.15 28.91 -2.72 -0.08 -1.23 16 22 C -0.14 -3.09 9.72 22.09 0.21 -2.88 16 23 C -0.06 -1.68 9.51 22.26 0.21 -1.46 16 24 C -0.17 -5.45 5.75 -21.21 -0.12 -5.57 16 25 H 0.04 1.63 5.60 -2.39 -0.01 1.62 16 26 H 0.04 1.93 7.69 -2.39 -0.02 1.92 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 29 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.40 14.67 6.69 -92.71 -0.62 14.05 16 32 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.14 3.38 6.51 -2.91 -0.02 3.36 16 Total: -1.00 -59.92 310.85 3.82 -56.10 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.49 Total: 24.32 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 4.04 Total: -18.55 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -2.66 Total: -104.44 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -59.92 3.82 -56.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.376 kcal (2) G-P(sol) polarization free energy of solvation -59.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds