Wall clock time and date at job start Tue Mar 31 2020 07:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46817 * 2 1 4 4 H 1.09002 * 109.47697 * 305.00150 * 3 2 1 5 5 C 1.50703 * 109.46909 * 185.00276 * 3 2 1 6 6 H 1.08000 * 119.99792 * 240.00032 * 5 3 2 7 7 C 1.37875 * 120.00417 * 60.00124 * 5 3 2 8 8 N 1.31518 * 119.99663 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47090 * 59.99914 * 9 7 5 11 11 H 1.48497 * 109.47392 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47370 * 300.00024 * 9 7 5 13 13 N 1.46498 * 109.47239 * 65.00387 * 3 2 1 14 14 C 1.38712 * 119.99881 * 274.99730 * 13 3 2 15 15 N 1.31699 * 119.23640 * 0.04349 * 14 13 3 16 16 C 1.33792 * 121.26101 * 179.97438 * 15 14 13 17 17 C 1.40532 * 120.97186 * 179.97438 * 16 15 14 18 18 C 1.36145 * 119.76740 * 179.97438 * 17 16 15 19 19 C 1.39290 * 121.03371 * 0.02562 * 18 17 16 20 20 C 1.36210 * 120.84780 * 359.97223 * 19 18 17 21 21 C 1.40356 * 119.64309 * 0.04732 * 20 19 18 22 22 C 1.40962 * 121.24642 * 179.97438 * 21 20 19 23 23 C 1.36321 * 118.28744 * 179.97438 * 22 21 20 24 24 Cl 1.73599 * 120.07845 * 180.02562 * 23 22 21 25 25 H 1.08999 * 109.46844 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46561 * 299.99778 * 1 2 3 27 27 H 1.08998 * 109.47189 * 59.99782 * 1 2 3 28 28 H 1.09001 * 109.46773 * 240.00732 * 2 1 3 29 29 H 1.08993 * 109.47502 * 119.99892 * 2 1 3 30 30 H 0.96996 * 120.00345 * 180.02562 * 8 7 5 31 31 H 0.97006 * 120.00040 * 94.99355 * 13 3 2 32 32 H 1.07994 * 120.11939 * 359.96068 * 17 16 15 33 33 H 1.07995 * 119.48555 * 179.72835 * 18 17 16 34 34 H 1.07994 * 119.57291 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.17969 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.85738 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0048 0.8814 -1.3820 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2180 -2.6511 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.3996 2.6809 1.3704 15 7 -0.4300 2.6365 0.3484 16 6 -1.6480 3.1855 0.4186 17 6 -2.5282 3.1351 -0.6758 18 6 -3.7623 3.7014 -0.5774 19 6 -4.1708 4.3339 0.5945 20 6 -3.3450 4.4023 1.6755 21 6 -2.0653 3.8295 1.6090 22 6 -1.1831 3.8811 2.7072 23 6 0.0453 3.3046 2.5767 24 17 1.1683 3.3404 3.9000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8291 -0.0608 -2.9500 31 1 2.2720 2.1231 1.9978 32 1 -2.2266 2.6490 -1.5918 33 1 -4.4334 3.6638 -1.4227 34 1 -5.1548 4.7756 0.6466 35 1 -3.6726 4.8957 2.5786 36 1 -1.4729 4.3649 3.6283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:08 Heat of formation + Delta-G solvation = 48.372204 kcal Electronic energy + Delta-G solvation = -20585.380099 eV Core-core repulsion = 17481.083353 eV Total energy + Delta-G solvation = -3104.296747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50791 -37.73648 -36.39738 -35.33252 -33.05997 -32.59059 -31.07381 -29.61512 -28.96582 -26.67551 -23.83853 -23.05229 -22.34671 -21.88195 -19.68450 -18.45497 -17.28152 -16.73289 -16.24802 -15.05975 -14.86501 -14.63248 -14.53618 -13.97178 -13.75523 -13.48541 -13.00711 -12.87631 -12.57173 -12.33866 -11.73704 -11.51683 -11.38334 -11.24592 -11.15471 -10.98379 -10.84365 -10.78908 -10.34471 -10.18055 -10.03518 -9.62782 -9.24611 -8.92411 -8.84380 -8.41931 -8.09709 -6.88982 -6.13079 -4.22093 0.65900 1.26341 2.24032 2.25251 3.24739 3.25877 3.30795 3.32481 3.92015 4.35269 4.47142 4.72296 4.86916 5.03092 5.11163 5.18579 5.28583 5.37116 5.58787 5.88055 5.94991 6.00608 6.26662 6.40013 6.46266 6.55638 6.61374 6.67104 6.73446 7.04898 7.05868 7.17303 7.37811 7.51251 7.65804 7.78524 7.95202 8.20018 8.33331 8.70894 8.94417 9.43991 10.92076 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.005280 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.206265 B = 5301.895117 C = 6360.434834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.275 3.725 4 H 0.058 0.942 5 C -0.537 4.537 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.444 3.556 15 N -0.522 5.522 16 C 0.195 3.805 17 C -0.114 4.114 18 C -0.089 4.089 19 C -0.157 4.157 20 C -0.071 4.071 21 C -0.164 4.164 22 C -0.020 4.020 23 C -0.136 4.136 24 Cl -0.068 7.068 25 H 0.019 0.981 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.028 0.972 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 6.267 7.613 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.305 5.305 14 C 0.191 3.809 15 N -0.245 5.245 16 C 0.070 3.930 17 C -0.134 4.134 18 C -0.109 4.109 19 C -0.176 4.176 20 C -0.090 4.090 21 C -0.170 4.170 22 C -0.045 4.045 23 C -0.169 4.169 24 Cl -0.040 7.040 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.237 0.763 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.287 5.640 6.568 14.224 hybrid contribution 1.102 0.366 1.139 1.627 sum -10.184 6.007 7.706 14.113 Atomic orbital electron populations 1.21828 0.98311 0.97728 1.01076 1.21935 0.92697 0.99710 1.02186 1.18894 0.94056 0.89202 0.80523 0.92457 1.21196 0.90764 1.39196 1.06348 0.92265 1.24834 0.98530 0.94720 0.95315 1.69877 1.35170 1.37515 1.09304 0.86529 0.84927 0.78341 0.77449 1.20173 1.21094 1.20188 1.45760 1.10461 1.55233 1.19042 1.18429 0.88182 0.87583 0.86699 1.68177 1.03492 1.25690 1.27111 1.18703 0.90593 0.91532 0.92213 1.20715 0.93081 1.01473 0.98092 1.20800 0.95797 0.96661 0.97667 1.20649 1.00084 1.03006 0.93903 1.20786 0.92266 0.97482 0.98421 1.18502 0.96492 1.06808 0.95159 1.21068 0.90657 0.94634 0.98185 1.21349 0.94338 1.10303 0.90957 1.98339 1.61722 1.97573 1.46337 0.96149 0.94775 0.92634 0.88204 0.95273 0.92512 0.76263 0.84963 0.86005 0.86386 0.86142 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.44 37.16 0.31 -2.53 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.06 1.59 7.51 -51.93 -0.39 1.20 16 5 C -0.54 -14.14 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.64 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.68 -14.41 5.10 -54.97 -0.28 -14.69 16 14 C 0.44 8.72 6.05 -155.44 -0.94 7.78 16 15 N -0.52 -10.52 6.29 -10.18 -0.06 -10.58 16 16 C 0.20 3.42 6.60 -84.85 -0.56 2.86 16 17 C -0.11 -1.74 9.98 -39.47 -0.39 -2.13 16 18 C -0.09 -1.09 9.94 -39.94 -0.40 -1.49 16 19 C -0.16 -1.77 9.96 -39.92 -0.40 -2.17 16 20 C -0.07 -0.85 9.77 -39.51 -0.39 -1.24 16 21 C -0.16 -2.48 5.74 -106.78 -0.61 -3.09 16 22 C -0.02 -0.28 9.65 -39.24 -0.38 -0.66 16 23 C -0.14 -2.25 6.32 -39.48 -0.25 -2.50 16 24 Cl -0.07 -1.00 27.53 -51.86 -1.43 -2.42 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.72 5.59 -51.93 -0.29 0.43 16 27 H 0.05 1.23 7.66 -51.93 -0.40 0.83 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.40 8.00 7.13 -40.82 -0.29 7.71 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -27.82 311.69 -10.35 -38.17 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.18 Total: 7.29 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -4.70 Total: -14.42 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.28 Total: -48.91 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.43 Total: -2.42 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.82 -10.35 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.541 kcal (2) G-P(sol) polarization free energy of solvation -27.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds