Wall clock time and date at job start Tue Mar 31 2020 07:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46817 * 2 1 4 4 H 1.09002 * 109.47697 * 305.00150 * 3 2 1 5 5 C 1.50703 * 109.46909 * 185.00276 * 3 2 1 6 6 H 1.08000 * 119.99792 * 240.00032 * 5 3 2 7 7 C 1.37875 * 120.00417 * 60.00124 * 5 3 2 8 8 N 1.31518 * 119.99663 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47090 * 59.99914 * 9 7 5 11 11 H 1.48497 * 109.47392 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47370 * 300.00024 * 9 7 5 13 13 N 1.46498 * 109.47239 * 65.00387 * 3 2 1 14 14 C 1.38712 * 119.99881 * 274.99730 * 13 3 2 15 15 N 1.31699 * 119.23640 * 0.04349 * 14 13 3 16 16 C 1.33792 * 121.26101 * 179.97438 * 15 14 13 17 17 C 1.40532 * 120.97186 * 179.97438 * 16 15 14 18 18 C 1.36145 * 119.76740 * 179.97438 * 17 16 15 19 19 C 1.39290 * 121.03371 * 0.02562 * 18 17 16 20 20 C 1.36210 * 120.84780 * 359.97223 * 19 18 17 21 21 C 1.40356 * 119.64309 * 0.04732 * 20 19 18 22 22 C 1.40962 * 121.24642 * 179.97438 * 21 20 19 23 23 C 1.36321 * 118.28744 * 179.97438 * 22 21 20 24 24 Cl 1.73599 * 120.07845 * 180.02562 * 23 22 21 25 25 H 1.08999 * 109.46844 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46561 * 299.99778 * 1 2 3 27 27 H 1.08998 * 109.47189 * 59.99782 * 1 2 3 28 28 H 1.09001 * 109.46773 * 240.00732 * 2 1 3 29 29 H 1.08993 * 109.47502 * 119.99892 * 2 1 3 30 30 H 0.96996 * 120.00345 * 180.02562 * 8 7 5 31 31 H 0.97006 * 120.00040 * 94.99355 * 13 3 2 32 32 H 1.07994 * 120.11939 * 359.96068 * 17 16 15 33 33 H 1.07995 * 119.48555 * 179.72835 * 18 17 16 34 34 H 1.07994 * 119.57291 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.17969 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.85738 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0048 0.8814 -1.3820 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2180 -2.6511 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.3996 2.6809 1.3704 15 7 -0.4300 2.6365 0.3484 16 6 -1.6480 3.1855 0.4186 17 6 -2.5282 3.1351 -0.6758 18 6 -3.7623 3.7014 -0.5774 19 6 -4.1708 4.3339 0.5945 20 6 -3.3450 4.4023 1.6755 21 6 -2.0653 3.8295 1.6090 22 6 -1.1831 3.8811 2.7072 23 6 0.0453 3.3046 2.5767 24 17 1.1683 3.3404 3.9000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8291 -0.0608 -2.9500 31 1 2.2720 2.1231 1.9978 32 1 -2.2266 2.6490 -1.5918 33 1 -4.4334 3.6638 -1.4227 34 1 -5.1548 4.7756 0.6466 35 1 -3.6726 4.8957 2.5786 36 1 -1.4729 4.3649 3.6283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:07 Heat of formation + Delta-G solvation = 34.441276 kcal Electronic energy + Delta-G solvation = -20585.984190 eV Core-core repulsion = 17481.083353 eV Total energy + Delta-G solvation = -3104.900837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.73617 -39.05093 -37.68038 -36.79089 -34.54245 -34.08276 -32.84983 -30.73935 -30.37117 -28.44681 -25.38278 -24.48312 -23.80466 -23.01755 -21.48119 -19.81107 -18.58638 -18.16861 -17.83070 -16.79318 -16.21753 -16.11393 -15.69599 -15.43985 -14.99810 -14.77512 -14.55482 -14.29904 -14.00838 -13.57779 -13.47077 -13.15043 -12.88897 -12.73405 -12.56459 -12.43854 -12.41381 -12.13078 -12.01722 -11.97788 -11.54784 -11.16877 -11.04551 -10.59920 -10.34873 -10.14461 -9.21205 -8.33495 -8.15202 -6.32116 -0.45200 0.06863 1.04648 1.13070 1.42554 1.43916 1.51681 2.10605 2.33199 2.56709 3.13107 3.27132 3.55219 3.78988 3.86328 4.08088 4.22310 4.40493 4.50235 4.55294 4.60632 4.75199 4.79789 4.86925 4.97279 5.11702 5.21271 5.29436 5.48461 5.52787 5.53739 5.59694 5.64988 5.76775 5.86462 6.02224 6.12782 6.38726 6.69367 6.79093 7.34721 7.47869 8.88923 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.005280 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.206265 B = 5301.895117 C = 6360.434834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 C 0.290 3.710 4 H 0.015 0.985 5 C -0.554 4.554 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.694 5.694 14 C 0.422 3.578 15 N -0.558 5.558 16 C 0.160 3.840 17 C -0.147 4.147 18 C -0.072 4.072 19 C -0.147 4.147 20 C -0.066 4.066 21 C -0.171 4.171 22 C -0.002 4.002 23 C -0.153 4.153 24 Cl -0.056 7.056 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 7.861 9.309 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.157 4.157 3 C 0.187 3.813 4 H 0.033 0.967 5 C -0.592 4.592 6 H 0.079 0.921 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.323 5.323 14 C 0.172 3.828 15 N -0.280 5.280 16 C 0.036 3.964 17 C -0.167 4.167 18 C -0.091 4.091 19 C -0.166 4.166 20 C -0.085 4.085 21 C -0.176 4.176 22 C -0.028 4.028 23 C -0.186 4.186 24 Cl -0.027 7.027 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.134 0.866 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.556 7.265 8.278 17.466 hybrid contribution 1.512 -0.003 0.591 1.624 sum -12.044 7.261 8.869 16.626 Atomic orbital electron populations 1.21610 0.96549 0.98363 1.00476 1.21768 0.94166 0.99267 1.00541 1.18353 0.92943 0.89004 0.81000 0.96724 1.21548 0.91952 1.39134 1.06570 0.92149 1.25647 1.02924 0.94325 0.94959 1.70020 1.36875 1.38165 1.09719 0.85516 0.79592 0.78357 0.77581 1.19321 1.20750 1.19872 1.45332 1.11813 1.57290 1.17889 1.18612 0.87567 0.88519 0.88150 1.68053 1.04926 1.26752 1.28273 1.19112 0.90179 0.92903 0.94197 1.20798 0.94674 1.03726 0.97506 1.21225 0.94479 0.94208 0.99237 1.21174 1.01519 1.01217 0.92670 1.21250 0.90573 0.96373 1.00281 1.18822 0.98079 1.06356 0.94312 1.21514 0.89209 0.92820 0.99229 1.21280 0.95627 1.11182 0.90495 1.98332 1.61553 1.97604 1.45225 0.94627 0.94515 0.94064 0.90949 0.95461 0.92559 0.75951 0.86574 0.82966 0.82234 0.82132 0.80110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.08 8.44 71.98 0.61 -4.47 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.29 15.18 2.24 44.25 0.10 15.28 16 4 H 0.01 0.89 7.51 -2.39 -0.02 0.87 16 5 C -0.55 -30.40 8.73 25.60 0.22 -30.18 16 6 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -52.22 11.29 21.45 0.24 -51.97 16 9 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 13 N -0.69 -30.94 5.10 -327.82 -1.67 -32.61 16 14 C 0.42 17.20 6.05 133.67 0.81 18.01 16 15 N -0.56 -23.55 6.29 -186.12 -1.17 -24.73 16 16 C 0.16 5.64 6.60 40.24 0.27 5.91 16 17 C -0.15 -4.51 9.98 22.34 0.22 -4.29 16 18 C -0.07 -1.55 9.94 22.04 0.22 -1.33 16 19 C -0.15 -2.58 9.96 22.05 0.22 -2.36 16 20 C -0.07 -1.29 9.77 22.31 0.22 -1.07 16 21 C -0.17 -4.78 5.74 -21.26 -0.12 -4.90 16 22 C 0.00 -0.06 9.65 22.49 0.22 0.16 16 23 C -0.15 -4.98 6.32 22.33 0.14 -4.84 16 24 Cl -0.06 -1.58 27.53 -2.72 -0.07 -1.66 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.62 5.59 -2.39 -0.01 1.60 16 27 H 0.04 1.94 7.66 -2.39 -0.02 1.92 16 28 H 0.07 4.05 5.95 -2.39 -0.01 4.03 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.40 16.83 7.13 -92.70 -0.66 16.17 16 32 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -64.65 311.69 3.53 -61.11 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.45 Total: 22.93 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 3.73 Total: -18.25 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -2.60 Total: -109.31 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.66 kcal Total: -64.65 3.53 -61.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.555 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds