Wall clock time and date at job start Tue Mar 31 2020 07:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47245 * 2 1 4 4 H 1.08999 * 109.47303 * 305.00243 * 3 2 1 5 5 C 1.50704 * 109.47009 * 185.00241 * 3 2 1 6 6 H 1.07998 * 119.99685 * 239.99836 * 5 3 2 7 7 C 1.37871 * 120.00049 * 60.00054 * 5 3 2 8 8 N 1.31515 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00033 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47003 * 60.00231 * 9 7 5 11 11 H 1.48499 * 109.47264 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47150 * 300.00297 * 9 7 5 13 13 N 1.46499 * 109.46959 * 65.00358 * 3 2 1 14 14 C 1.38444 * 119.99592 * 274.99979 * 13 3 2 15 15 N 1.31941 * 120.14865 * 359.97438 * 14 13 3 16 16 C 1.32664 * 122.64375 * 180.02562 * 15 14 13 17 17 C 1.36054 * 121.98928 * 359.97438 * 16 15 14 18 18 C 1.40857 * 118.85990 * 0.02562 * 17 16 15 19 19 C 1.40188 * 122.15341 * 180.02562 * 18 17 16 20 20 C 1.36263 * 119.49891 * 180.02562 * 19 18 17 21 21 C 1.39393 * 120.95823 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 119.49330 * 179.97438 * 21 20 19 23 23 C 1.36407 * 121.01077 * 359.97299 * 21 20 19 24 24 C 1.40075 * 119.53474 * 0.02844 * 23 21 20 25 25 H 1.08997 * 109.46741 * 300.00032 * 1 2 3 26 26 H 1.09002 * 109.47315 * 59.99519 * 1 2 3 27 27 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46695 * 240.00606 * 2 1 3 29 29 H 1.09002 * 109.47315 * 120.00481 * 2 1 3 30 30 H 0.97008 * 120.00089 * 179.97438 * 8 7 5 31 31 H 0.96992 * 120.00182 * 95.00098 * 13 3 2 32 32 H 1.08001 * 119.00001 * 179.72220 * 16 15 14 33 33 H 1.08001 * 120.56993 * 179.97438 * 17 16 15 34 34 H 1.08002 * 120.25270 * 0.04577 * 19 18 17 35 35 H 1.07997 * 119.52357 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.23033 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8812 -1.3819 10 1 6.5975 0.1471 -0.2350 11 1 6.3977 0.2177 -2.6511 12 1 6.4995 2.2814 -1.3822 13 7 1.6525 2.0974 1.2518 14 6 0.4021 2.6797 1.3701 15 7 -0.4427 2.6470 0.3571 16 6 -1.6520 3.1891 0.4160 17 6 -2.1058 3.8193 1.5332 18 6 -1.2633 3.8972 2.6594 19 6 -1.6604 4.5296 3.8459 20 6 -0.8013 4.5739 4.9026 21 6 0.4660 3.9993 4.8209 22 17 1.5302 4.0785 6.1902 23 6 0.8828 3.3756 3.6816 24 6 0.0251 3.3117 2.5761 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8291 -0.0603 -2.9504 31 1 2.2720 2.1231 1.9977 32 1 -2.2942 3.1320 -0.4504 33 1 -3.0946 4.2531 1.5559 34 1 -2.6400 4.9779 3.9219 35 1 -1.1070 5.0606 5.8169 36 1 1.8673 2.9343 3.6323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:55 Heat of formation + Delta-G solvation = 33.184736 kcal Electronic energy + Delta-G solvation = -20465.887302 eV Core-core repulsion = 17360.931977 eV Total energy + Delta-G solvation = -3104.955325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.81052 -38.92699 -37.79431 -36.96658 -35.02974 -33.38631 -32.27735 -31.64234 -30.07625 -28.34824 -25.21065 -24.70596 -24.39108 -22.64075 -21.50472 -19.56327 -18.84939 -18.07407 -17.59568 -16.80675 -16.48650 -16.01265 -15.84914 -15.47484 -15.02923 -14.71634 -14.61264 -14.38672 -14.06633 -13.67989 -13.43940 -13.15104 -12.88438 -12.82011 -12.68401 -12.32033 -12.24783 -12.17558 -12.05565 -11.91404 -11.53866 -11.33103 -10.96268 -10.52564 -10.05846 -9.94268 -9.84588 -8.17578 -8.08387 -6.31940 -0.37423 -0.05327 1.08980 1.14264 1.43215 1.43969 1.51740 2.13701 2.33409 2.58272 3.13295 3.25305 3.62792 3.70046 3.87739 4.08999 4.12015 4.37373 4.46960 4.58020 4.63486 4.75662 4.82650 4.90572 4.96629 5.00769 5.15319 5.20606 5.32764 5.43971 5.50801 5.58137 5.62495 5.75143 5.87916 5.94313 6.11625 6.39663 6.74735 6.81982 7.36672 7.58763 8.88759 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.005063 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.877009 B = 5528.935074 C = 6843.744174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C 0.290 3.710 4 H 0.017 0.983 5 C -0.554 4.554 6 H 0.061 0.939 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.690 5.690 14 C 0.431 3.569 15 N -0.582 5.582 16 C 0.128 3.872 17 C -0.239 4.239 18 C 0.004 3.996 19 C -0.102 4.102 20 C -0.086 4.086 21 C -0.060 4.060 22 Cl -0.072 7.072 23 C -0.076 4.076 24 C -0.164 4.164 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 7.832 13.221 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.592 4.592 6 H 0.079 0.921 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.317 5.317 14 C 0.182 3.818 15 N -0.304 5.304 16 C -0.018 4.018 17 C -0.263 4.263 18 C -0.002 4.002 19 C -0.120 4.120 20 C -0.105 4.105 21 C -0.087 4.087 22 Cl -0.043 7.043 23 C -0.096 4.096 24 C -0.170 4.170 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.191 0.809 35 H 0.180 0.820 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.975 7.241 12.163 17.317 hybrid contribution 1.351 0.058 0.564 1.465 sum -8.624 7.299 12.727 17.018 Atomic orbital electron populations 1.21630 0.96394 0.98482 1.00721 1.21780 0.94377 0.99206 1.00525 1.18379 0.92904 0.89054 0.81023 0.96474 1.21552 0.91991 1.39120 1.06578 0.92051 1.25626 1.02776 0.94375 0.95040 1.70016 1.36821 1.38144 1.09690 0.85542 0.79776 0.78317 0.77556 1.19385 1.20830 1.19922 1.45211 1.11899 1.56927 1.17711 1.18803 0.86923 0.87560 0.88525 1.67343 1.05999 1.26692 1.30354 1.22322 0.90405 0.90754 0.98356 1.21683 1.02572 1.08492 0.93508 1.18330 0.91528 0.94371 0.95931 1.21220 1.01288 0.99103 0.90425 1.21096 0.90841 0.97885 1.00718 1.20580 0.93846 1.04898 0.89356 1.98359 1.65450 1.97382 1.43088 1.20733 0.99435 0.98017 0.91461 1.18466 0.97390 1.06739 0.94435 0.94287 0.93728 0.94668 0.91000 0.95529 0.92567 0.76113 0.81731 0.81731 0.80879 0.82026 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.96 8.45 71.98 0.61 -4.35 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 3 C 0.29 14.62 2.25 44.25 0.10 14.72 16 4 H 0.02 1.01 7.55 -2.39 -0.02 0.99 16 5 C -0.55 -29.59 8.73 25.60 0.22 -29.37 16 6 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 7 C 0.02 1.21 5.29 84.65 0.45 1.66 16 8 N -0.91 -51.24 11.29 21.44 0.24 -51.00 16 9 Si 0.96 42.45 29.54 68.60 2.03 44.48 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 N -0.69 -29.31 5.08 -327.03 -1.66 -30.97 16 14 C 0.43 16.82 6.08 133.92 0.81 17.64 16 15 N -0.58 -22.93 6.41 -193.31 -1.24 -24.17 16 16 C 0.13 3.93 11.06 84.06 0.93 4.86 16 17 C -0.24 -5.98 9.87 22.40 0.22 -5.76 16 18 C 0.00 0.10 5.75 -21.29 -0.12 -0.02 16 19 C -0.10 -2.00 9.81 22.28 0.22 -1.78 16 20 C -0.09 -1.68 9.72 22.09 0.21 -1.46 16 21 C -0.06 -1.45 6.28 22.12 0.14 -1.31 16 22 Cl -0.07 -1.59 28.91 -2.72 -0.08 -1.67 16 23 C -0.08 -2.21 9.26 22.29 0.21 -2.00 16 24 C -0.16 -5.35 5.75 -21.22 -0.12 -5.47 16 25 H 0.04 1.64 5.59 -2.39 -0.01 1.62 16 26 H 0.04 2.00 7.69 -2.39 -0.02 1.98 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 3.92 5.95 -2.38 -0.01 3.91 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 31 H 0.40 15.63 6.69 -92.71 -0.62 15.01 16 32 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.13 3.74 6.51 -2.91 -0.02 3.72 16 Total: -1.00 -61.65 310.84 3.83 -57.82 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.49 Total: 23.86 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.04 Total: -18.35 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -2.66 Total: -106.14 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -61.65 3.83 -57.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.009 kcal (2) G-P(sol) polarization free energy of solvation -61.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds