Wall clock time and date at job start Tue Mar 31 2020 07:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46869 * 2 1 4 4 H 1.09005 * 109.47206 * 175.20509 * 3 2 1 5 5 C 1.50698 * 109.47589 * 55.20212 * 3 2 1 6 6 H 1.07997 * 119.99815 * 245.75106 * 5 3 2 7 7 C 1.37876 * 120.00105 * 65.75749 * 5 3 2 8 8 N 1.31516 * 119.99650 * 5.53293 * 7 5 3 9 9 Si 1.86796 * 120.00012 * 185.54164 * 7 5 3 10 10 H 1.48504 * 109.47013 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47101 * 299.99476 * 9 7 5 12 12 H 1.48501 * 109.47473 * 59.99749 * 9 7 5 13 13 N 1.46506 * 109.47165 * 295.20169 * 3 2 1 14 14 C 1.38706 * 119.99974 * 279.63616 * 13 3 2 15 15 C 1.40245 * 119.22372 * 4.67455 * 14 13 3 16 16 C 1.36218 * 119.87316 * 179.73831 * 15 14 13 17 17 C 1.41021 * 118.28984 * 0.49775 * 16 15 14 18 18 C 1.40335 * 121.23543 * 179.79060 * 17 16 15 19 19 C 1.36308 * 119.63068 * 179.97438 * 18 17 16 20 20 Cl 1.73600 * 119.59193 * 179.97438 * 19 18 17 21 21 C 1.39392 * 120.81835 * 0.02562 * 19 18 17 22 22 C 1.36130 * 121.02131 * 359.97438 * 21 19 18 23 23 C 1.40542 * 119.77565 * 0.02562 * 22 21 19 24 24 N 1.31699 * 119.22711 * 184.93801 * 14 13 3 25 25 H 1.09001 * 109.46776 * 304.94853 * 1 2 3 26 26 H 1.08993 * 109.47210 * 64.95100 * 1 2 3 27 27 H 1.09001 * 109.46689 * 184.95506 * 1 2 3 28 28 H 1.08994 * 109.47294 * 239.99585 * 2 1 3 29 29 H 1.09002 * 109.46874 * 119.99201 * 2 1 3 30 30 H 0.96998 * 120.00052 * 355.16471 * 8 7 5 31 31 H 0.96996 * 119.99940 * 99.62767 * 13 3 2 32 32 H 1.07998 * 120.06805 * 359.97438 * 15 14 13 33 33 H 1.08001 * 120.85532 * 180.25610 * 16 15 14 34 34 H 1.08001 * 120.18569 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.49342 * 179.97438 * 21 19 18 36 36 H 1.07997 * 120.11143 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4438 0.0859 5 6 1.4430 2.1864 1.1667 6 1 0.7585 3.0035 0.9929 7 6 1.7708 1.8241 2.4560 8 7 2.6857 0.9034 2.6677 9 14 0.9154 2.6408 3.9018 10 1 1.4428 2.0785 5.1710 11 1 1.1687 4.1035 3.8649 12 1 -0.5458 2.3892 3.8190 13 7 1.6482 2.0990 -1.2498 14 6 2.3830 1.8834 -2.4063 15 6 3.4371 0.9586 -2.3854 16 6 4.1639 0.7326 -3.5151 17 6 3.8316 1.4555 -4.6794 18 6 4.5422 1.2746 -5.8760 19 6 4.1927 1.9904 -6.9821 20 17 5.0729 1.7663 -8.4616 21 6 3.1381 2.9008 -6.9398 22 6 2.4287 3.0999 -5.7952 23 6 2.7600 2.3799 -4.6345 24 7 2.0777 2.5557 -3.4968 25 1 -0.3633 0.5887 0.8424 26 1 -0.3633 0.4351 -0.9309 27 1 -0.3633 -1.0239 0.0888 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.0794 0.4295 1.9185 31 1 0.8750 2.6843 -1.2685 32 1 3.6698 0.4237 -1.4765 33 1 4.9764 0.0210 -3.5180 34 1 5.3614 0.5722 -5.9202 35 1 2.8797 3.4569 -7.8288 36 1 1.6140 3.8087 -5.7790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:17 Heat of formation + Delta-G solvation = 23.255456 kcal Electronic energy + Delta-G solvation = -20005.485488 eV Core-core repulsion = 16900.099597 eV Total energy + Delta-G solvation = -3105.385891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.79155 -39.35416 -37.86300 -36.83040 -34.66147 -34.31040 -32.65667 -31.11946 -30.10501 -27.78005 -26.02469 -24.84907 -23.92662 -23.13590 -21.67969 -19.61521 -19.01224 -18.23633 -18.18220 -16.36643 -16.23237 -15.81856 -15.75796 -15.49127 -15.34104 -15.00834 -14.66511 -14.34583 -14.10781 -13.99346 -13.90195 -13.35741 -12.89881 -12.73165 -12.66394 -12.56762 -12.15907 -11.95990 -11.86820 -11.85461 -11.76378 -11.56734 -10.79835 -10.52602 -10.40733 -10.30737 -9.45367 -8.62372 -8.42823 -6.36979 -0.52465 -0.09110 1.03420 1.17078 1.57028 1.61761 1.81117 1.90861 2.30900 2.58675 3.13094 3.18735 3.51502 3.69851 3.84167 3.94779 4.06906 4.23544 4.26735 4.30495 4.41848 4.55171 4.72395 4.79178 4.89511 4.95696 5.04996 5.08173 5.20329 5.22240 5.25726 5.36321 5.47725 5.52863 5.69610 5.83730 5.93346 6.32398 6.52967 6.82043 7.21627 7.41222 8.76198 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038685 B = 0.003235 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.619366 B = 8652.079122 C = 8819.836123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.129 4.129 3 C 0.272 3.728 4 H 0.010 0.990 5 C -0.610 4.610 6 H 0.052 0.948 7 C -0.012 4.012 8 N -0.928 5.928 9 Si 1.108 2.892 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.270 1.270 13 N -0.689 5.689 14 C 0.423 3.577 15 C -0.229 4.229 16 C -0.011 4.011 17 C -0.168 4.168 18 C -0.054 4.054 19 C -0.072 4.072 20 Cl -0.067 7.067 21 C -0.071 4.071 22 C -0.118 4.118 23 C 0.167 3.833 24 N -0.590 5.590 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.265 0.735 31 H 0.398 0.602 32 H 0.134 0.866 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -0.457 -17.264 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.027 0.973 5 C -0.648 4.648 6 H 0.071 0.929 7 C -0.212 4.212 8 N -0.565 5.565 9 Si 0.931 3.069 10 H -0.211 1.211 11 H -0.203 1.203 12 H -0.195 1.195 13 N -0.316 5.316 14 C 0.173 3.827 15 C -0.253 4.253 16 C -0.036 4.036 17 C -0.173 4.173 18 C -0.073 4.073 19 C -0.100 4.100 20 Cl -0.038 7.038 21 C -0.091 4.091 22 C -0.138 4.138 23 C 0.043 3.957 24 N -0.313 5.313 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.232 0.768 32 H 0.151 0.849 33 H 0.192 0.808 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.199 0.081 -15.560 15.715 hybrid contribution 0.455 -0.434 -1.417 1.551 sum 2.654 -0.353 -16.978 17.187 Atomic orbital electron populations 1.21454 0.95382 1.00106 1.00967 1.21941 0.97472 0.97959 0.99455 1.18681 0.93922 0.90102 0.80544 0.97270 1.22134 1.31088 1.19097 0.92509 0.92930 1.26875 0.95199 0.96654 1.02496 1.70914 1.24969 1.24929 1.35693 0.83009 0.75647 0.75334 0.72882 1.21135 1.20271 1.19535 1.45095 1.30674 1.49742 1.06073 1.18976 0.88398 0.88483 0.86802 1.21565 0.99370 1.02982 1.01334 1.21591 0.96844 0.95437 0.89743 1.18668 1.00370 1.02351 0.95880 1.20973 0.98715 0.98068 0.89541 1.20521 0.98374 1.02476 0.88581 1.98357 1.75130 1.96514 1.33792 1.20911 0.93033 0.96364 0.98821 1.20754 1.01767 1.00968 0.90262 1.19005 0.91155 0.93661 0.91863 1.67612 1.34197 1.30223 0.99274 0.93042 0.94020 0.93324 0.93602 0.92993 0.92374 0.76790 0.84864 0.80799 0.82352 0.82239 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.53 71.98 0.69 -4.12 16 2 C -0.13 -5.46 5.22 30.60 0.16 -5.30 16 3 C 0.27 12.42 1.57 44.24 0.07 12.49 16 4 H 0.01 0.48 6.42 -2.38 -0.02 0.47 16 5 C -0.61 -30.91 7.08 25.60 0.18 -30.72 16 6 H 0.05 2.67 7.68 -2.91 -0.02 2.65 16 7 C -0.01 -0.60 5.28 84.65 0.45 -0.15 16 8 N -0.93 -51.42 13.20 21.45 0.28 -51.14 16 9 Si 1.11 46.84 29.91 68.60 2.05 48.89 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 13 N -0.69 -28.70 4.81 -327.91 -1.58 -30.27 16 14 C 0.42 16.46 7.56 133.64 1.01 17.47 16 15 C -0.23 -7.88 8.34 22.29 0.19 -7.70 16 16 C -0.01 -0.31 9.88 22.48 0.22 -0.09 16 17 C -0.17 -4.72 5.74 -21.26 -0.12 -4.84 16 18 C -0.05 -1.19 9.52 22.33 0.21 -0.97 16 19 C -0.07 -1.52 6.28 22.10 0.14 -1.39 16 20 Cl -0.07 -1.20 28.92 -2.72 -0.08 -1.28 16 21 C -0.07 -1.49 9.72 22.06 0.21 -1.28 16 22 C -0.12 -3.07 9.98 22.34 0.22 -2.85 16 23 C 0.17 5.41 6.60 40.23 0.27 5.67 16 24 N -0.59 -22.28 10.37 -186.20 -1.93 -24.21 16 25 H 0.05 2.21 6.89 -2.39 -0.02 2.19 16 26 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.78 6.73 -2.39 -0.02 1.76 16 29 H 0.05 2.40 6.18 -2.39 -0.01 2.38 16 30 H 0.27 14.55 5.63 -92.71 -0.52 14.03 16 31 H 0.40 16.51 8.57 -92.71 -0.79 15.71 16 32 H 0.13 4.70 5.64 -2.91 -0.02 4.68 16 33 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -58.19 312.83 3.21 -54.98 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.57 Total: 26.81 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 3.89 Total: -23.78 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.22 Total: -105.62 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.05 Total: 48.89 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -58.19 3.21 -54.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.234 kcal (2) G-P(sol) polarization free energy of solvation -58.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds