Wall clock time and date at job start Tue Mar 31 2020 07:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46904 * 2 1 4 4 H 1.09001 * 109.47390 * 305.47106 * 3 2 1 5 5 C 1.50700 * 109.47182 * 185.47012 * 3 2 1 6 6 H 1.08000 * 120.00511 * 244.83110 * 5 3 2 7 7 C 1.37877 * 119.99969 * 64.82970 * 5 3 2 8 8 N 1.31517 * 120.00441 * 187.24838 * 7 5 3 9 9 Si 1.86801 * 119.99846 * 7.24521 * 7 5 3 10 10 H 1.48501 * 109.47377 * 270.00301 * 9 7 5 11 11 H 1.48503 * 109.47048 * 30.00468 * 9 7 5 12 12 H 1.48503 * 109.47158 * 150.00152 * 9 7 5 13 13 N 1.46500 * 109.47291 * 65.47484 * 3 2 1 14 14 C 1.38659 * 119.99935 * 274.99650 * 13 3 2 15 15 C 1.38544 * 121.03839 * 359.71639 * 14 13 3 16 16 C 1.38972 * 119.67977 * 179.73422 * 15 14 13 17 17 Cl 1.73603 * 119.08623 * 180.25928 * 16 15 14 18 18 N 1.31391 * 121.82241 * 0.58331 * 16 15 14 19 19 C 1.33799 * 121.66211 * 359.69647 * 18 16 15 20 20 C 1.40560 * 120.97555 * 180.02562 * 19 18 16 21 21 C 1.36142 * 119.75475 * 179.97438 * 20 19 18 22 22 C 1.39256 * 121.03371 * 0.02676 * 21 20 19 23 23 C 1.36263 * 120.81382 * 359.93021 * 22 21 20 24 24 C 1.40161 * 119.63256 * 0.08626 * 23 22 21 25 25 H 1.09002 * 109.46544 * 59.99921 * 1 2 3 26 26 H 1.08995 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47170 * 299.99999 * 1 2 3 28 28 H 1.08997 * 109.47170 * 240.00000 * 2 1 3 29 29 H 1.08995 * 109.46732 * 119.99785 * 2 1 3 30 30 H 0.97004 * 119.99720 * 354.94512 * 8 7 5 31 31 H 0.97001 * 120.00691 * 94.99494 * 13 3 2 32 32 H 1.07994 * 120.15988 * 0.02562 * 15 14 13 33 33 H 1.07997 * 120.12011 * 359.95551 * 20 19 18 34 34 H 1.07996 * 119.47893 * 179.97438 * 21 20 19 35 35 H 1.08003 * 119.59329 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.17991 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8369 5 6 3.5409 1.4447 -0.1354 6 1 4.1554 1.8162 0.6713 7 6 4.1296 0.9725 -1.2893 8 7 5.4366 0.8406 -1.3543 9 14 3.0709 0.5198 -2.7603 10 1 2.6821 -0.9105 -2.6690 11 1 1.8500 1.3651 -2.7702 12 1 3.8391 0.7451 -4.0111 13 7 1.6622 2.0940 1.2566 14 6 0.4108 2.6769 1.3864 15 6 -0.4968 2.6609 0.3398 16 6 -1.7454 3.2489 0.5026 17 17 -2.8732 3.2139 -0.8167 18 7 -2.0936 3.8360 1.6253 19 6 -1.2650 3.8933 2.6743 20 6 -1.6527 4.5247 3.8687 21 6 -0.7898 4.5681 4.9209 22 6 0.4768 3.9958 4.8348 23 6 0.8860 3.3748 3.6929 24 6 0.0227 3.3124 2.5905 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9918 1.1438 -0.6190 31 1 2.2874 2.1177 1.9979 32 1 -0.2369 2.1895 -0.5965 33 1 -2.6313 4.9739 3.9514 34 1 -1.0921 5.0547 5.8364 35 1 1.1428 4.0441 5.6836 36 1 1.8704 2.9341 3.6375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161050343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:49 Heat of formation + Delta-G solvation = 42.729827 kcal Electronic energy + Delta-G solvation = -20696.634794 eV Core-core repulsion = 17592.093376 eV Total energy + Delta-G solvation = -3104.541419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -40.74901 -37.70244 -36.99004 -35.84329 -33.74818 -32.20388 -30.93413 -30.08021 -29.48182 -26.96456 -23.76749 -23.58736 -22.60398 -21.40519 -20.23692 -18.61619 -17.97034 -17.04174 -16.81822 -15.34758 -14.98646 -14.66455 -14.56225 -14.18133 -13.96857 -13.91320 -13.40147 -12.82980 -12.76765 -12.50472 -12.44042 -12.18970 -11.54077 -11.31444 -11.19325 -11.10617 -11.04330 -10.84543 -10.67860 -10.62892 -9.94668 -9.87392 -9.30066 -9.08216 -8.77348 -8.67137 -8.50023 -7.10288 -6.72247 -4.43690 0.70848 0.96678 2.04150 2.25977 3.05433 3.20645 3.27719 3.40484 3.75608 4.23849 4.27619 4.60851 4.77270 4.93767 4.99914 5.03790 5.30113 5.35365 5.55777 5.61677 5.76474 5.77312 5.87850 5.91837 6.06775 6.23998 6.28868 6.38624 6.46608 6.49430 6.55275 6.58197 6.70560 6.93236 7.02814 7.33967 7.61379 8.06526 8.09429 8.10420 8.56733 9.27892 10.66804 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.006090 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.678239 B = 4596.824164 C = 5942.022490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C 0.238 3.762 4 H 0.047 0.953 5 C -0.614 4.614 6 H 0.063 0.937 7 C 0.039 3.961 8 N -0.897 5.897 9 Si 1.047 2.953 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.284 1.284 13 N -0.678 5.678 14 C 0.300 3.700 15 C -0.283 4.283 16 C 0.259 3.741 17 Cl -0.046 7.046 18 N -0.541 5.541 19 C 0.188 3.812 20 C -0.113 4.113 21 C -0.088 4.088 22 C -0.147 4.147 23 C -0.070 4.070 24 C -0.163 4.163 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.271 0.729 31 H 0.400 0.600 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.756 3.795 7.899 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.180 4.180 3 C 0.134 3.866 4 H 0.064 0.936 5 C -0.652 4.652 6 H 0.081 0.919 7 C -0.168 4.168 8 N -0.530 5.530 9 Si 0.875 3.125 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.210 1.210 13 N -0.296 5.296 14 C 0.177 3.823 15 C -0.312 4.312 16 C 0.085 3.915 17 Cl -0.018 7.018 18 N -0.258 5.258 19 C 0.066 3.934 20 C -0.132 4.132 21 C -0.108 4.108 22 C -0.166 4.166 23 C -0.090 4.090 24 C -0.169 4.169 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.236 0.764 32 H 0.169 0.831 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.443 3.421 6.187 14.311 hybrid contribution 1.006 0.206 1.632 1.928 sum -11.436 3.628 7.819 14.321 Atomic orbital electron populations 1.22272 0.97491 1.00580 1.01505 1.22351 0.93759 0.99755 1.02164 1.19487 0.96900 0.88574 0.81624 0.93564 1.22066 0.89164 1.48947 1.05023 0.91866 1.25716 0.97541 0.93431 1.00145 1.70824 1.04385 1.41716 1.36093 0.83961 0.75265 0.77210 0.76040 1.20458 1.20008 1.21024 1.45394 1.11114 1.54982 1.18085 1.18016 0.86290 0.86742 0.91279 1.21230 0.94001 1.13875 1.02138 1.21223 0.88250 0.93171 0.88869 1.98374 1.62389 1.96818 1.44189 1.67267 1.35585 1.23269 0.99634 1.18327 0.88263 0.94575 0.92270 1.20657 1.00534 1.00755 0.91244 1.20816 0.93604 0.98138 0.98277 1.20709 0.96887 1.00816 0.98150 1.20771 0.98429 0.97451 0.92320 1.18539 0.97159 1.06391 0.94840 0.92814 0.93852 0.92582 0.91636 0.92132 0.91910 0.76368 0.83111 0.85000 0.85711 0.85918 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.24 37.16 0.31 -2.42 16 2 C -0.14 -2.77 5.20 -26.73 -0.14 -2.91 16 3 C 0.24 5.01 1.77 -69.08 -0.12 4.89 16 4 H 0.05 1.02 5.01 -51.93 -0.26 0.76 16 5 C -0.61 -15.41 9.09 -34.44 -0.31 -15.72 16 6 H 0.06 1.69 7.95 -52.49 -0.42 1.27 16 7 C 0.04 1.02 5.42 -17.82 -0.10 0.92 16 8 N -0.90 -25.63 13.70 55.43 0.76 -24.87 16 9 Si 1.05 23.38 25.40 -169.99 -4.32 19.07 16 10 H -0.28 -5.87 6.74 56.52 0.38 -5.49 16 11 H -0.27 -5.66 6.37 56.52 0.36 -5.30 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -12.47 5.10 -52.93 -0.27 -12.74 16 14 C 0.30 5.27 5.53 -83.39 -0.46 4.81 16 15 C -0.28 -4.98 6.55 -39.20 -0.26 -5.24 16 16 C 0.26 4.44 7.26 -17.47 -0.13 4.31 16 17 Cl -0.05 -0.69 29.08 -51.86 -1.51 -2.20 16 18 N -0.54 -9.42 10.30 -8.21 -0.08 -9.50 16 19 C 0.19 3.07 6.60 -84.89 -0.56 2.51 16 20 C -0.11 -1.50 9.98 -39.46 -0.39 -1.90 16 21 C -0.09 -0.99 9.94 -39.96 -0.40 -1.39 16 22 C -0.15 -1.71 9.96 -39.91 -0.40 -2.11 16 23 C -0.07 -0.97 9.52 -39.57 -0.38 -1.35 16 24 C -0.16 -2.66 5.75 -106.66 -0.61 -3.28 16 25 H 0.05 0.88 6.42 -51.93 -0.33 0.55 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.96 5.38 -51.93 -0.28 0.68 16 28 H 0.07 1.34 4.44 -51.93 -0.23 1.11 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.27 7.68 8.72 -40.82 -0.36 7.32 16 31 H 0.40 6.89 6.73 -40.82 -0.27 6.62 16 32 H 0.15 2.69 4.13 -52.49 -0.22 2.48 16 33 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.12 1.54 6.52 -52.48 -0.34 1.20 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -27.53 300.36 -8.53 -36.05 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -3.68 Total: 8.55 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -3.95 Total: -18.88 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.40 Total: -47.12 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.32 Total: 19.07 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.51 Total: -2.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.53 -8.53 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161050343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.785 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds