Wall clock time and date at job start Tue Mar 31 2020 07:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46904 * 2 1 4 4 H 1.09001 * 109.47390 * 305.47106 * 3 2 1 5 5 C 1.50700 * 109.47182 * 185.47012 * 3 2 1 6 6 H 1.08000 * 120.00511 * 244.83110 * 5 3 2 7 7 C 1.37877 * 119.99969 * 64.82970 * 5 3 2 8 8 N 1.31517 * 120.00441 * 187.24838 * 7 5 3 9 9 Si 1.86801 * 119.99846 * 7.24521 * 7 5 3 10 10 H 1.48501 * 109.47377 * 270.00301 * 9 7 5 11 11 H 1.48503 * 109.47048 * 30.00468 * 9 7 5 12 12 H 1.48503 * 109.47158 * 150.00152 * 9 7 5 13 13 N 1.46500 * 109.47291 * 65.47484 * 3 2 1 14 14 C 1.38659 * 119.99935 * 274.99650 * 13 3 2 15 15 C 1.38544 * 121.03839 * 359.71639 * 14 13 3 16 16 C 1.38972 * 119.67977 * 179.73422 * 15 14 13 17 17 Cl 1.73603 * 119.08623 * 180.25928 * 16 15 14 18 18 N 1.31391 * 121.82241 * 0.58331 * 16 15 14 19 19 C 1.33799 * 121.66211 * 359.69647 * 18 16 15 20 20 C 1.40560 * 120.97555 * 180.02562 * 19 18 16 21 21 C 1.36142 * 119.75475 * 179.97438 * 20 19 18 22 22 C 1.39256 * 121.03371 * 0.02676 * 21 20 19 23 23 C 1.36263 * 120.81382 * 359.93021 * 22 21 20 24 24 C 1.40161 * 119.63256 * 0.08626 * 23 22 21 25 25 H 1.09002 * 109.46544 * 59.99921 * 1 2 3 26 26 H 1.08995 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47170 * 299.99999 * 1 2 3 28 28 H 1.08997 * 109.47170 * 240.00000 * 2 1 3 29 29 H 1.08995 * 109.46732 * 119.99785 * 2 1 3 30 30 H 0.97004 * 119.99720 * 354.94512 * 8 7 5 31 31 H 0.97001 * 120.00691 * 94.99494 * 13 3 2 32 32 H 1.07994 * 120.15988 * 0.02562 * 15 14 13 33 33 H 1.07997 * 120.12011 * 359.95551 * 20 19 18 34 34 H 1.07996 * 119.47893 * 179.97438 * 21 20 19 35 35 H 1.08003 * 119.59329 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.17991 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8369 5 6 3.5409 1.4447 -0.1354 6 1 4.1554 1.8162 0.6713 7 6 4.1296 0.9725 -1.2893 8 7 5.4366 0.8406 -1.3543 9 14 3.0709 0.5198 -2.7603 10 1 2.6821 -0.9105 -2.6690 11 1 1.8500 1.3651 -2.7702 12 1 3.8391 0.7451 -4.0111 13 7 1.6622 2.0940 1.2566 14 6 0.4108 2.6769 1.3864 15 6 -0.4968 2.6609 0.3398 16 6 -1.7454 3.2489 0.5026 17 17 -2.8732 3.2139 -0.8167 18 7 -2.0936 3.8360 1.6253 19 6 -1.2650 3.8933 2.6743 20 6 -1.6527 4.5247 3.8687 21 6 -0.7898 4.5681 4.9209 22 6 0.4768 3.9958 4.8348 23 6 0.8860 3.3748 3.6929 24 6 0.0227 3.3124 2.5905 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9918 1.1438 -0.6190 31 1 2.2874 2.1177 1.9979 32 1 -0.2369 2.1895 -0.5965 33 1 -2.6313 4.9739 3.9514 34 1 -1.0921 5.0547 5.8364 35 1 1.1428 4.0441 5.6836 36 1 1.8704 2.9341 3.6375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161050343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:44 Heat of formation + Delta-G solvation = 26.575683 kcal Electronic energy + Delta-G solvation = -20697.335290 eV Core-core repulsion = 17592.093376 eV Total energy + Delta-G solvation = -3105.241915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -41.95770 -39.04931 -38.22652 -37.04497 -35.36454 -33.92618 -32.21291 -31.24479 -30.71862 -28.62391 -24.98033 -24.78307 -24.28704 -22.65396 -21.71790 -20.20256 -19.37202 -18.30779 -18.18789 -16.84311 -16.22895 -15.99184 -15.72834 -15.52666 -15.27337 -15.06634 -14.95474 -14.46347 -14.26570 -14.06355 -13.63513 -13.57318 -12.79767 -12.62265 -12.56257 -12.39786 -12.28152 -12.22302 -12.15385 -11.94165 -11.63316 -11.41265 -10.96448 -10.69781 -10.56140 -9.93544 -9.66778 -8.86669 -8.37083 -6.52608 -0.43541 -0.19199 0.80149 1.06780 1.41932 1.50509 1.64781 1.95185 2.33640 2.40186 2.99410 3.11304 3.47569 3.68560 3.76095 4.02585 4.16229 4.22150 4.30221 4.34595 4.35806 4.49157 4.59963 4.66378 4.74395 4.99920 5.03948 5.08979 5.14129 5.18483 5.36745 5.39560 5.47393 5.51584 5.57615 5.88666 5.92164 6.10984 6.47942 6.68789 6.85164 7.26579 8.56707 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.006090 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.678239 B = 4596.824164 C = 5942.022490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.246 3.754 4 H 0.041 0.959 5 C -0.608 4.608 6 H 0.034 0.966 7 C -0.009 4.009 8 N -0.934 5.934 9 Si 1.075 2.925 10 H -0.256 1.256 11 H -0.248 1.248 12 H -0.291 1.291 13 N -0.685 5.685 14 C 0.289 3.711 15 C -0.291 4.291 16 C 0.247 3.753 17 Cl -0.032 7.032 18 N -0.548 5.548 19 C 0.162 3.838 20 C -0.122 4.122 21 C -0.073 4.073 22 C -0.130 4.130 23 C -0.092 4.092 24 C -0.174 4.174 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.256 0.744 31 H 0.403 0.597 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 4.313 9.486 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.059 0.941 5 C -0.646 4.646 6 H 0.052 0.948 7 C -0.209 4.209 8 N -0.570 5.570 9 Si 0.897 3.103 10 H -0.182 1.182 11 H -0.172 1.172 12 H -0.217 1.217 13 N -0.305 5.305 14 C 0.168 3.832 15 C -0.320 4.320 16 C 0.072 3.928 17 Cl -0.004 7.004 18 N -0.264 5.264 19 C 0.041 3.959 20 C -0.141 4.141 21 C -0.093 4.093 22 C -0.148 4.148 23 C -0.111 4.111 24 C -0.180 4.180 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.239 0.761 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.184 0.816 35 H 0.174 0.826 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.676 3.961 7.822 17.095 hybrid contribution 1.650 0.185 1.366 2.150 sum -13.026 4.145 9.188 16.470 Atomic orbital electron populations 1.22171 0.95135 1.01931 1.01687 1.22231 0.95788 0.98113 1.01554 1.19173 0.93967 0.89904 0.82820 0.94126 1.22285 0.91518 1.47075 1.03722 0.94756 1.26956 0.97664 0.93354 1.02902 1.70944 1.05560 1.44500 1.35975 0.83655 0.74919 0.78834 0.72891 1.18158 1.17243 1.21747 1.45053 1.11952 1.56245 1.17270 1.18121 0.85754 0.87118 0.92163 1.21221 0.94421 1.14388 1.01973 1.21328 0.88557 0.93539 0.89380 1.98368 1.61769 1.96784 1.43471 1.67312 1.36090 1.23078 0.99967 1.18786 0.88390 0.95637 0.93134 1.20954 1.01791 1.00634 0.90713 1.21299 0.92602 0.96423 0.98955 1.21187 0.97415 0.98186 0.98033 1.20962 0.98639 0.98834 0.92676 1.18715 0.97749 1.06405 0.95082 0.92224 0.91858 0.92873 0.92382 0.92603 0.93440 0.76082 0.83622 0.83529 0.81556 0.82566 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 8.24 71.98 0.59 -4.30 16 2 C -0.14 -5.29 5.20 30.59 0.16 -5.13 16 3 C 0.25 10.38 1.77 44.24 0.08 10.46 16 4 H 0.04 1.78 5.01 -2.39 -0.01 1.77 16 5 C -0.61 -31.31 9.09 25.60 0.23 -31.08 16 6 H 0.03 1.92 7.95 -2.91 -0.02 1.89 16 7 C -0.01 -0.49 5.42 84.65 0.46 -0.03 16 8 N -0.93 -55.25 13.70 21.45 0.29 -54.95 16 9 Si 1.08 46.75 25.40 68.60 1.74 48.49 16 10 H -0.26 -10.22 6.74 99.48 0.67 -9.55 16 11 H -0.25 -9.66 6.37 99.48 0.63 -9.03 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.68 -25.35 5.10 -321.37 -1.64 -26.99 16 14 C 0.29 10.07 5.53 38.96 0.22 10.29 16 15 C -0.29 -10.09 6.55 22.52 0.15 -9.94 16 16 C 0.25 8.27 7.26 84.93 0.62 8.89 16 17 Cl -0.03 -0.94 29.08 -2.72 -0.08 -1.02 16 18 N -0.55 -18.49 10.30 -179.89 -1.85 -20.34 16 19 C 0.16 5.05 6.60 40.22 0.27 5.32 16 20 C -0.12 -2.89 9.98 22.35 0.22 -2.67 16 21 C -0.07 -1.32 9.94 22.03 0.22 -1.10 16 22 C -0.13 -2.53 9.96 22.05 0.22 -2.31 16 23 C -0.09 -2.38 9.52 22.28 0.21 -2.16 16 24 C -0.17 -5.49 5.75 -21.18 -0.12 -5.61 16 25 H 0.06 1.84 6.42 -2.39 -0.02 1.83 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.75 5.38 -2.39 -0.01 1.73 16 28 H 0.06 2.30 4.44 -2.39 -0.01 2.29 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.26 15.30 8.72 -92.70 -0.81 14.50 16 31 H 0.40 14.15 6.73 -92.71 -0.62 13.52 16 32 H 0.15 5.11 4.13 -2.91 -0.01 5.10 16 33 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.13 3.08 6.52 -2.91 -0.02 3.06 16 Total: -1.00 -61.14 300.36 2.35 -58.79 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.36 Total: 25.41 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.52 Total: -29.38 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.20 Total: -102.29 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.74 Total: 48.49 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -61.14 2.35 -58.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161050343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.369 kcal (2) G-P(sol) polarization free energy of solvation -61.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds