Wall clock time and date at job start Tue Mar 31 2020 07:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46871 * 2 1 4 4 H 1.08997 * 109.47460 * 179.69461 * 3 2 1 5 5 C 1.50702 * 109.46721 * 59.69507 * 3 2 1 6 6 H 1.07998 * 120.00016 * 244.29285 * 5 3 2 7 7 C 1.37880 * 119.99862 * 64.29861 * 5 3 2 8 8 N 1.31512 * 119.99834 * 8.33227 * 7 5 3 9 9 Si 1.86799 * 119.99931 * 188.05108 * 7 5 3 10 10 H 1.48495 * 109.47326 * 89.99976 * 9 7 5 11 11 H 1.48504 * 109.47188 * 210.00270 * 9 7 5 12 12 H 1.48509 * 109.47256 * 330.00117 * 9 7 5 13 13 N 1.46506 * 109.47106 * 299.69920 * 3 2 1 14 14 C 1.38684 * 119.99496 * 274.16928 * 13 3 2 15 15 C 1.40233 * 119.23148 * 5.81220 * 14 13 3 16 16 C 1.36231 * 119.87902 * 179.97438 * 15 14 13 17 17 C 1.40986 * 118.29816 * 359.97438 * 16 15 14 18 18 C 1.40352 * 121.24344 * 180.02562 * 17 16 15 19 19 C 1.36176 * 119.66313 * 179.97438 * 18 17 16 20 20 C 1.39409 * 120.83253 * 0.03062 * 19 18 17 21 21 Cl 1.73596 * 119.50172 * 179.97438 * 20 19 18 22 22 C 1.36264 * 120.99793 * 359.94870 * 20 19 18 23 23 C 1.40492 * 119.75493 * 0.04554 * 22 20 19 24 24 N 1.31720 * 119.22678 * 185.53056 * 14 13 3 25 25 H 1.08992 * 109.47236 * 303.49931 * 1 2 3 26 26 H 1.08993 * 109.47590 * 63.50918 * 1 2 3 27 27 H 1.09002 * 109.46519 * 183.50506 * 1 2 3 28 28 H 1.09006 * 109.46734 * 240.00778 * 2 1 3 29 29 H 1.08990 * 109.47403 * 120.00578 * 2 1 3 30 30 H 0.97001 * 120.00055 * 3.64411 * 8 7 5 31 31 H 0.97000 * 119.99921 * 94.18017 * 13 3 2 32 32 H 1.07999 * 120.06505 * 359.94575 * 15 14 13 33 33 H 1.08003 * 120.84877 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.16843 * 359.96280 * 18 17 16 35 35 H 1.07998 * 119.58803 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.11817 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0055 5 6 1.5314 2.1550 1.2267 6 1 0.8550 2.9907 1.1243 7 6 1.9297 1.7400 2.4798 8 7 2.8753 0.8344 2.6027 9 14 1.1317 2.4699 4.0029 10 1 -0.0506 1.6549 4.3811 11 1 2.1092 2.4727 5.1208 12 1 0.7020 3.8626 3.7175 13 7 1.5575 2.1310 -1.1998 14 6 2.2692 2.0372 -2.3864 15 6 3.3788 1.1823 -2.4537 16 6 4.0871 1.0796 -3.6129 17 6 3.6723 1.8479 -4.7199 18 6 4.3565 1.7893 -5.9440 19 6 3.9276 2.5450 -6.9925 20 6 2.8167 3.3776 -6.8660 21 17 2.3003 4.3264 -8.2250 22 6 2.1297 3.4576 -5.6920 23 6 2.5432 2.6925 -4.5886 24 7 1.8838 2.7491 -3.4255 25 1 -0.3633 0.5671 0.8569 26 1 -0.3634 0.4584 -0.9197 27 1 -0.3632 -1.0258 0.0628 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.3293 0.4970 1.8147 31 1 0.7404 2.6526 -1.1642 32 1 3.6716 0.6067 -1.5881 33 1 4.9444 0.4264 -3.6820 34 1 5.2188 1.1485 -6.0537 35 1 4.4552 2.4993 -7.9338 36 1 1.2707 4.1071 -5.6099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:22 Heat of formation + Delta-G solvation = 35.689798 kcal Electronic energy + Delta-G solvation = -20007.751439 eV Core-core repulsion = 16902.904742 eV Total energy + Delta-G solvation = -3104.846697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56849 -38.02535 -36.68947 -35.60291 -33.26882 -32.81042 -31.08975 -29.83453 -28.91011 -26.13799 -24.28891 -23.42738 -22.73212 -21.99409 -20.06804 -18.11846 -17.66040 -16.96957 -16.71641 -15.12192 -14.89477 -14.48366 -14.33318 -14.03481 -13.77881 -13.58635 -13.40736 -13.14799 -12.86515 -12.70366 -12.27200 -11.87669 -11.65763 -11.40964 -11.30109 -11.00142 -10.94621 -10.52633 -10.43651 -10.25780 -10.22454 -10.10016 -9.28908 -9.14263 -8.80121 -8.53969 -8.23682 -7.09218 -6.61616 -4.35811 0.57691 1.11276 2.06042 2.18919 3.07505 3.32174 3.34379 3.50114 3.79382 4.35090 4.37887 4.63257 4.87486 4.97950 5.09278 5.11474 5.17248 5.28827 5.45593 5.82239 5.94027 6.02300 6.03534 6.06562 6.09129 6.19775 6.25279 6.48337 6.53455 6.58969 6.71785 6.83944 6.95609 7.12171 7.15975 7.57421 7.61406 8.16301 8.30528 8.56917 8.64377 9.32943 10.75017 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.003390 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.663525 B = 8257.163472 C = 8578.724129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 C 0.260 3.740 4 H 0.035 0.965 5 C -0.608 4.608 6 H 0.059 0.941 7 C 0.032 3.968 8 N -0.900 5.900 9 Si 1.070 2.930 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.287 1.287 13 N -0.678 5.678 14 C 0.442 3.558 15 C -0.203 4.203 16 C -0.032 4.032 17 C -0.166 4.166 18 C -0.053 4.053 19 C -0.157 4.157 20 C -0.002 4.002 21 Cl -0.079 7.079 22 C -0.111 4.111 23 C 0.204 3.796 24 N -0.572 5.572 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.271 0.729 31 H 0.401 0.599 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 0.459 -15.032 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.175 4.175 3 C 0.156 3.844 4 H 0.052 0.948 5 C -0.646 4.646 6 H 0.077 0.923 7 C -0.174 4.174 8 N -0.535 5.535 9 Si 0.897 3.103 10 H -0.211 1.211 11 H -0.209 1.209 12 H -0.213 1.213 13 N -0.303 5.303 14 C 0.191 3.809 15 C -0.226 4.226 16 C -0.057 4.057 17 C -0.171 4.171 18 C -0.072 4.072 19 C -0.177 4.177 20 C -0.031 4.031 21 Cl -0.050 7.050 22 C -0.132 4.132 23 C 0.079 3.921 24 N -0.296 5.296 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.236 0.764 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.258 0.885 -13.211 13.300 hybrid contribution 0.375 -0.190 -1.833 1.881 sum 1.632 0.695 -15.044 15.148 Atomic orbital electron populations 1.21536 0.96448 0.99247 1.01522 1.22025 0.96575 0.98979 0.99958 1.19025 0.94723 0.88989 0.81617 0.94761 1.21922 1.32707 1.18734 0.91220 0.92299 1.25738 0.95417 0.95263 1.00987 1.70801 1.21061 1.27754 1.33902 0.83520 0.75957 0.75649 0.75149 1.21149 1.20899 1.21328 1.45365 1.26328 1.52011 1.06557 1.18796 0.87855 0.87395 0.86849 1.21588 0.97994 1.02925 1.00092 1.21199 0.97570 0.95586 0.91315 1.18665 0.99761 1.02948 0.95776 1.20802 0.98115 0.97092 0.91222 1.20473 0.97590 0.99448 1.00192 1.20459 0.97155 0.96661 0.88798 1.98355 1.90478 1.71505 1.44676 1.20458 1.01282 1.01285 0.90131 1.18210 0.90266 0.92625 0.91039 1.67631 1.34335 1.28180 0.99406 0.91338 0.94504 0.95145 0.95255 0.90723 0.91758 0.76360 0.84182 0.84571 0.85119 0.85348 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.52 37.16 0.35 -2.19 16 2 C -0.14 -2.83 5.38 -26.73 -0.14 -2.97 16 3 C 0.26 5.72 1.55 -69.08 -0.11 5.62 16 4 H 0.03 0.81 5.98 -51.93 -0.31 0.50 16 5 C -0.61 -15.03 7.34 -34.44 -0.25 -15.28 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.03 0.82 5.22 -17.82 -0.09 0.72 16 8 N -0.90 -24.22 12.87 55.43 0.71 -23.50 16 9 Si 1.07 23.15 29.91 -169.99 -5.08 18.06 16 10 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.68 -13.66 4.53 -55.00 -0.25 -13.91 16 14 C 0.44 8.45 7.61 -155.49 -1.18 7.27 16 15 C -0.20 -3.45 8.62 -39.55 -0.34 -3.79 16 16 C -0.03 -0.45 9.88 -39.26 -0.39 -0.84 16 17 C -0.17 -2.47 5.74 -106.77 -0.61 -3.09 16 18 C -0.05 -0.63 9.77 -39.53 -0.39 -1.02 16 19 C -0.16 -1.83 9.73 -39.89 -0.39 -2.21 16 20 C 0.00 -0.03 6.27 -39.86 -0.25 -0.28 16 21 Cl -0.08 -0.91 28.91 -51.86 -1.50 -2.40 16 22 C -0.11 -1.65 9.72 -39.44 -0.38 -2.04 16 23 C 0.20 3.45 6.60 -84.86 -0.56 2.89 16 24 N -0.57 -10.85 10.37 -10.22 -0.11 -10.96 16 25 H 0.07 1.44 7.08 -51.93 -0.37 1.07 16 26 H 0.04 0.68 7.72 -51.93 -0.40 0.28 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.56 7.24 -51.93 -0.38 0.18 16 29 H 0.07 1.70 6.34 -51.93 -0.33 1.37 16 30 H 0.27 7.16 6.15 -40.82 -0.25 6.91 16 31 H 0.40 8.03 8.66 -40.82 -0.35 7.68 16 32 H 0.14 2.37 5.77 -52.49 -0.30 2.07 16 33 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -26.63 313.91 -10.24 -36.87 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.01 Total: 8.32 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -4.74 Total: -17.21 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.36 Total: -48.37 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.08 Total: 18.06 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.63 -10.24 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.562 kcal (2) G-P(sol) polarization free energy of solvation -26.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds