Wall clock time and date at job start Tue Mar 31 2020 07:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46871 * 2 1 4 4 H 1.08997 * 109.47460 * 179.69461 * 3 2 1 5 5 C 1.50702 * 109.46721 * 59.69507 * 3 2 1 6 6 H 1.07998 * 120.00016 * 244.29285 * 5 3 2 7 7 C 1.37880 * 119.99862 * 64.29861 * 5 3 2 8 8 N 1.31512 * 119.99834 * 8.33227 * 7 5 3 9 9 Si 1.86799 * 119.99931 * 188.05108 * 7 5 3 10 10 H 1.48495 * 109.47326 * 89.99976 * 9 7 5 11 11 H 1.48504 * 109.47188 * 210.00270 * 9 7 5 12 12 H 1.48509 * 109.47256 * 330.00117 * 9 7 5 13 13 N 1.46506 * 109.47106 * 299.69920 * 3 2 1 14 14 C 1.38684 * 119.99496 * 274.16928 * 13 3 2 15 15 C 1.40233 * 119.23148 * 5.81220 * 14 13 3 16 16 C 1.36231 * 119.87902 * 179.97438 * 15 14 13 17 17 C 1.40986 * 118.29816 * 359.97438 * 16 15 14 18 18 C 1.40352 * 121.24344 * 180.02562 * 17 16 15 19 19 C 1.36176 * 119.66313 * 179.97438 * 18 17 16 20 20 C 1.39409 * 120.83253 * 0.03062 * 19 18 17 21 21 Cl 1.73596 * 119.50172 * 179.97438 * 20 19 18 22 22 C 1.36264 * 120.99793 * 359.94870 * 20 19 18 23 23 C 1.40492 * 119.75493 * 0.04554 * 22 20 19 24 24 N 1.31720 * 119.22678 * 185.53056 * 14 13 3 25 25 H 1.08992 * 109.47236 * 303.49931 * 1 2 3 26 26 H 1.08993 * 109.47590 * 63.50918 * 1 2 3 27 27 H 1.09002 * 109.46519 * 183.50506 * 1 2 3 28 28 H 1.09006 * 109.46734 * 240.00778 * 2 1 3 29 29 H 1.08990 * 109.47403 * 120.00578 * 2 1 3 30 30 H 0.97001 * 120.00055 * 3.64411 * 8 7 5 31 31 H 0.97000 * 119.99921 * 94.18017 * 13 3 2 32 32 H 1.07999 * 120.06505 * 359.94575 * 15 14 13 33 33 H 1.08003 * 120.84877 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.16843 * 359.96280 * 18 17 16 35 35 H 1.07998 * 119.58803 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.11817 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0055 5 6 1.5314 2.1550 1.2267 6 1 0.8550 2.9907 1.1243 7 6 1.9297 1.7400 2.4798 8 7 2.8753 0.8344 2.6027 9 14 1.1317 2.4699 4.0029 10 1 -0.0506 1.6549 4.3811 11 1 2.1092 2.4727 5.1208 12 1 0.7020 3.8626 3.7175 13 7 1.5575 2.1310 -1.1998 14 6 2.2692 2.0372 -2.3864 15 6 3.3788 1.1823 -2.4537 16 6 4.0871 1.0796 -3.6129 17 6 3.6723 1.8479 -4.7199 18 6 4.3565 1.7893 -5.9440 19 6 3.9276 2.5450 -6.9925 20 6 2.8167 3.3776 -6.8660 21 17 2.3003 4.3264 -8.2250 22 6 2.1297 3.4576 -5.6920 23 6 2.5432 2.6925 -4.5886 24 7 1.8838 2.7491 -3.4255 25 1 -0.3633 0.5671 0.8569 26 1 -0.3634 0.4584 -0.9197 27 1 -0.3632 -1.0258 0.0628 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.3293 0.4970 1.8147 31 1 0.7404 2.6526 -1.1642 32 1 3.6716 0.6067 -1.5881 33 1 4.9444 0.4264 -3.6820 34 1 5.2188 1.1485 -6.0537 35 1 4.4552 2.4993 -7.9338 36 1 1.2707 4.1071 -5.6099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:22 Heat of formation + Delta-G solvation = 22.968929 kcal Electronic energy + Delta-G solvation = -20008.303058 eV Core-core repulsion = 16902.904742 eV Total energy + Delta-G solvation = -3105.398315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.77764 -39.34020 -37.91223 -36.89154 -34.56013 -34.35484 -32.72029 -30.96351 -30.20717 -27.84862 -25.93792 -24.75457 -24.00887 -23.11122 -21.71791 -19.61208 -18.96203 -18.29676 -18.10771 -16.42043 -16.13956 -15.81252 -15.72303 -15.49744 -15.37392 -14.97741 -14.79068 -14.39967 -14.09336 -13.97580 -13.89692 -13.28863 -12.95867 -12.69454 -12.60552 -12.56450 -12.16111 -11.97937 -11.96744 -11.95333 -11.77679 -11.40468 -10.84131 -10.52965 -10.39200 -10.36292 -9.34865 -8.64721 -8.46938 -6.36372 -0.54193 -0.05505 1.03389 1.04195 1.56516 1.61930 1.79570 1.93531 2.32590 2.58265 3.13323 3.17403 3.54186 3.74728 3.89097 3.96933 4.06533 4.18450 4.26596 4.37398 4.44399 4.55126 4.73553 4.85418 4.88520 4.95183 4.98366 5.11075 5.20090 5.21362 5.35249 5.40793 5.49481 5.51498 5.72586 5.85233 5.93943 6.32993 6.52462 6.81469 7.22123 7.40732 8.74683 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.003390 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.663525 B = 8257.163472 C = 8578.724129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.014 0.986 5 C -0.612 4.612 6 H 0.049 0.951 7 C -0.010 4.010 8 N -0.924 5.924 9 Si 1.109 2.891 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.690 5.690 14 C 0.423 3.577 15 C -0.232 4.232 16 C -0.009 4.009 17 C -0.176 4.176 18 C -0.042 4.042 19 C -0.150 4.150 20 C 0.004 3.996 21 Cl -0.064 7.064 22 C -0.133 4.133 23 C 0.174 3.826 24 N -0.595 5.595 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.264 0.736 31 H 0.396 0.604 32 H 0.133 0.867 33 H 0.180 0.820 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 0.001 -17.476 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.032 0.968 5 C -0.651 4.651 6 H 0.068 0.932 7 C -0.211 4.211 8 N -0.560 5.560 9 Si 0.932 3.068 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.317 5.317 14 C 0.174 3.826 15 C -0.255 4.255 16 C -0.033 4.033 17 C -0.181 4.181 18 C -0.060 4.060 19 C -0.169 4.169 20 C -0.024 4.024 21 Cl -0.035 7.035 22 C -0.153 4.153 23 C 0.050 3.950 24 N -0.319 5.319 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.151 0.849 33 H 0.197 0.803 34 H 0.192 0.808 35 H 0.180 0.820 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.380 0.437 -15.725 15.910 hybrid contribution 0.094 0.034 -1.396 1.399 sum 2.474 0.472 -17.120 17.305 Atomic orbital electron populations 1.21445 0.95433 1.00176 1.00921 1.21875 0.97359 0.97961 0.99421 1.18686 0.93347 0.89595 0.81637 0.96821 1.22179 1.31971 1.18412 0.92494 0.93231 1.26850 0.95375 0.95180 1.03665 1.70881 1.22337 1.29203 1.33616 0.82999 0.75566 0.75732 0.72467 1.19859 1.21188 1.20283 1.45073 1.26760 1.53129 1.06719 1.18963 0.88679 0.88419 0.86529 1.21588 0.98672 1.03931 1.01307 1.21662 0.97444 0.94531 0.89712 1.18975 0.99333 1.02422 0.97341 1.21241 0.98480 0.96837 0.89446 1.20915 0.96578 0.97907 1.01528 1.20668 0.96978 0.96281 0.88485 1.98367 1.90427 1.71128 1.43531 1.20473 1.02085 1.02025 0.90750 1.18594 0.91543 0.94103 0.90790 1.67534 1.35451 1.28639 1.00232 0.93150 0.93965 0.93215 0.93860 0.92934 0.92552 0.76920 0.84875 0.80284 0.80836 0.82012 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 9.52 71.98 0.69 -4.14 16 2 C -0.13 -5.40 5.38 30.60 0.16 -5.24 16 3 C 0.27 12.45 1.55 44.24 0.07 12.52 16 4 H 0.01 0.70 5.98 -2.39 -0.01 0.68 16 5 C -0.61 -31.28 7.34 25.60 0.19 -31.10 16 6 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 7 C -0.01 -0.51 5.22 84.66 0.44 -0.07 16 8 N -0.92 -51.02 12.87 21.45 0.28 -50.74 16 9 Si 1.11 47.20 29.91 68.60 2.05 49.25 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 13 N -0.69 -29.07 4.53 -327.92 -1.49 -30.56 16 14 C 0.42 16.69 7.61 133.64 1.02 17.71 16 15 C -0.23 -7.91 8.62 22.29 0.19 -7.71 16 16 C -0.01 -0.23 9.88 22.48 0.22 -0.01 16 17 C -0.18 -4.80 5.74 -21.26 -0.12 -4.92 16 18 C -0.04 -0.79 9.77 22.30 0.22 -0.57 16 19 C -0.15 -2.83 9.73 22.07 0.21 -2.61 16 20 C 0.00 0.10 6.27 22.09 0.14 0.24 16 21 Cl -0.06 -1.30 28.91 -2.72 -0.08 -1.38 16 22 C -0.13 -3.87 9.72 22.36 0.22 -3.65 16 23 C 0.17 5.80 6.60 40.22 0.27 6.06 16 24 N -0.60 -23.19 10.37 -186.24 -1.93 -25.12 16 25 H 0.05 2.14 7.08 -2.39 -0.02 2.12 16 26 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.69 7.24 -2.38 -0.02 1.67 16 29 H 0.05 2.46 6.34 -2.39 -0.02 2.44 16 30 H 0.26 14.49 6.15 -92.71 -0.57 13.92 16 31 H 0.40 16.77 8.66 -92.71 -0.80 15.97 16 32 H 0.13 4.64 5.77 -2.91 -0.02 4.62 16 33 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -59.70 313.91 3.26 -56.44 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.51 Total: 25.60 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 3.91 Total: -23.50 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -3.14 Total: -106.42 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.05 Total: 49.25 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -59.70 3.26 -56.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.414 kcal (2) G-P(sol) polarization free energy of solvation -59.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds