Wall clock time and date at job start Tue Mar 31 2020 07:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47098 * 2 1 4 4 H 1.08999 * 109.47450 * 304.25328 * 3 2 1 5 5 C 1.50703 * 109.47377 * 184.24782 * 3 2 1 6 6 H 1.08001 * 119.99543 * 275.01018 * 5 3 2 7 7 C 1.37872 * 120.00101 * 95.00721 * 5 3 2 8 8 N 1.31512 * 120.00241 * 184.86795 * 7 5 3 9 9 Si 1.86803 * 119.99982 * 4.85824 * 7 5 3 10 10 H 1.48506 * 109.46636 * 84.76043 * 9 7 5 11 11 H 1.48501 * 109.47309 * 204.76139 * 9 7 5 12 12 H 1.48499 * 109.47058 * 324.76300 * 9 7 5 13 13 N 1.46509 * 109.47067 * 64.24857 * 3 2 1 14 14 C 1.38420 * 119.99800 * 274.99619 * 13 3 2 15 15 N 1.31973 * 120.14601 * 5.54434 * 14 13 3 16 16 C 1.32656 * 122.63401 * 179.70034 * 15 14 13 17 17 C 1.36063 * 121.99016 * 0.58121 * 16 15 14 18 18 C 1.40861 * 118.85549 * 359.71728 * 17 16 15 19 19 C 1.40162 * 122.17283 * 180.02562 * 18 17 16 20 20 C 1.36307 * 119.50678 * 179.97438 * 19 18 17 21 21 C 1.39239 * 120.99599 * 0.02562 * 20 19 18 22 22 C 1.36442 * 121.02160 * 0.02562 * 21 20 19 23 23 Cl 1.73603 * 120.24688 * 179.97438 * 22 21 20 24 24 C 1.40201 * 119.50903 * 359.95112 * 22 21 20 25 25 H 1.08995 * 109.47409 * 299.99873 * 1 2 3 26 26 H 1.09003 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46933 * 60.00275 * 1 2 3 28 28 H 1.08993 * 109.46810 * 120.00165 * 2 1 3 29 29 H 1.09005 * 109.47127 * 239.99642 * 2 1 3 30 30 H 0.96998 * 120.00280 * 180.02562 * 8 7 5 31 31 H 0.96996 * 119.99486 * 95.00277 * 13 3 2 32 32 H 1.07995 * 118.99986 * 180.30052 * 16 15 14 33 33 H 1.08003 * 120.57189 * 179.70142 * 17 16 15 34 34 H 1.07997 * 120.25169 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.50626 * 179.97438 * 20 19 18 36 36 H 1.07992 * 119.49111 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5433 1.4438 -0.1052 6 1 4.1469 1.3396 0.7843 7 6 4.1480 1.5780 -1.3370 8 7 5.4556 1.4834 -1.4414 9 14 3.1101 1.8939 -2.8576 10 1 2.8450 3.3498 -2.9822 11 1 3.8381 1.4185 -4.0615 12 1 1.8220 1.1647 -2.7379 13 7 1.6369 2.1029 1.2441 14 6 0.3854 2.6856 1.3443 15 7 -0.4873 2.5543 0.3631 16 6 -1.7015 3.0866 0.4096 17 6 -2.1273 3.8187 1.4745 18 6 -1.2520 4.0102 2.5614 19 6 -1.6186 4.7511 3.6933 20 6 -0.7283 4.9016 4.7144 21 6 0.5400 4.3308 4.6499 22 6 0.9298 3.6044 3.5626 23 17 2.5163 2.9022 3.5030 24 6 0.0392 3.4289 2.4941 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 5.8811 1.5781 -2.3079 31 1 2.2472 2.1318 1.9975 32 1 -2.3706 2.9382 -0.4251 33 1 -3.1193 4.2457 1.4861 34 1 -2.5991 5.1994 3.7560 35 1 -1.0107 5.4728 5.5864 36 1 1.2260 4.4651 5.4731 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:01 Heat of formation + Delta-G solvation = 51.791809 kcal Electronic energy + Delta-G solvation = -20986.442395 eV Core-core repulsion = 17882.293933 eV Total energy + Delta-G solvation = -3104.148462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.86565 -38.88906 -38.44010 -37.11760 -34.80179 -33.74953 -32.57923 -31.57504 -30.18813 -28.69678 -24.99678 -24.80007 -24.34484 -22.75248 -21.58325 -19.78790 -18.79729 -18.46807 -17.61008 -17.25916 -16.60322 -16.05953 -15.84054 -15.71473 -15.24184 -14.79248 -14.71044 -14.60834 -13.87381 -13.80773 -13.64279 -13.59065 -12.94485 -12.86985 -12.77302 -12.48379 -12.35408 -12.30720 -11.87032 -11.73321 -11.50965 -11.24234 -11.02018 -10.79194 -10.15261 -10.04484 -9.80310 -8.39667 -8.09722 -6.45854 -0.43851 -0.00603 0.82951 1.01762 1.29724 1.31569 1.44733 2.18654 2.27134 2.54156 3.02843 3.21016 3.63345 3.72919 3.88095 4.10928 4.20004 4.29327 4.38990 4.47666 4.49649 4.60485 4.74106 4.86892 4.93875 4.98805 5.07051 5.16406 5.27674 5.31983 5.36929 5.45698 5.50724 5.64492 5.68366 5.88985 6.05935 6.47315 6.57955 6.77234 7.21082 7.53937 8.76096 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.006506 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.215820 B = 4302.725541 C = 5124.482755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.246 3.754 4 H 0.040 0.960 5 C -0.529 4.529 6 H 0.038 0.962 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.934 3.066 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.245 1.245 13 N -0.698 5.698 14 C 0.418 3.582 15 N -0.584 5.584 16 C 0.128 3.872 17 C -0.241 4.241 18 C 0.012 3.988 19 C -0.111 4.111 20 C -0.078 4.078 21 C -0.123 4.123 22 C -0.027 4.027 23 Cl -0.046 7.046 24 C -0.177 4.177 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.270 0.730 31 H 0.398 0.602 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.524 7.316 11.681 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.162 4.162 3 C 0.141 3.859 4 H 0.058 0.942 5 C -0.568 4.568 6 H 0.057 0.943 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.758 3.242 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.168 1.168 13 N -0.346 5.346 14 C 0.169 3.831 15 N -0.306 5.306 16 C -0.019 4.019 17 C -0.265 4.265 18 C 0.007 3.993 19 C -0.129 4.129 20 C -0.097 4.097 21 C -0.142 4.142 22 C -0.055 4.055 23 Cl -0.017 7.017 24 C -0.184 4.184 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.257 0.743 32 H 0.188 0.812 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.194 0.806 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.878 6.674 10.679 21.058 hybrid contribution 0.797 0.182 -0.076 0.821 sum -16.081 6.855 10.602 20.445 Atomic orbital electron populations 1.21749 0.94820 0.99396 1.01911 1.21969 0.96028 0.98078 1.00101 1.18906 0.92249 0.90221 0.84523 0.94193 1.21218 0.90731 1.50726 0.94099 0.94348 1.25687 0.95822 0.93723 1.01813 1.70003 1.10597 1.50544 1.26137 0.85940 0.80144 0.79271 0.78892 1.20061 1.20365 1.16811 1.47547 1.12464 1.55882 1.18725 1.19049 0.87231 0.87860 0.88954 1.67442 1.05035 1.28491 1.29656 1.22395 0.90666 0.90850 0.97977 1.21687 1.02299 1.07613 0.94876 1.18257 0.90347 0.94384 0.96346 1.21438 1.01889 0.98003 0.91608 1.21312 0.91108 0.97325 0.99954 1.21070 0.98953 0.97546 0.96666 1.20878 0.85580 1.01409 0.97614 1.98174 1.26378 1.82613 1.94559 1.18513 0.97385 1.06724 0.95750 0.93593 0.93573 0.92740 0.94011 0.93218 0.92085 0.74277 0.81217 0.81398 0.80992 0.80620 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 8.37 71.98 0.60 -4.13 16 2 C -0.12 -5.58 5.60 30.59 0.17 -5.40 16 3 C 0.25 12.30 1.91 44.24 0.08 12.39 16 4 H 0.04 2.09 4.80 -2.39 -0.01 2.08 16 5 C -0.53 -30.79 9.05 25.60 0.23 -30.56 16 6 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 7 C 0.03 1.73 5.47 84.65 0.46 2.19 16 8 N -0.93 -58.04 13.96 21.45 0.30 -57.74 16 9 Si 0.93 45.79 26.99 68.60 1.85 47.64 16 10 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.24 -11.42 6.82 99.48 0.68 -10.74 16 13 N -0.70 -31.70 4.90 -327.08 -1.60 -33.31 16 14 C 0.42 16.86 6.24 133.91 0.84 17.70 16 15 N -0.58 -22.34 5.96 -193.36 -1.15 -23.49 16 16 C 0.13 3.72 11.06 84.06 0.93 4.65 16 17 C -0.24 -5.75 9.87 22.41 0.22 -5.53 16 18 C 0.01 0.32 5.74 -21.30 -0.12 0.20 16 19 C -0.11 -1.97 9.81 22.29 0.22 -1.75 16 20 C -0.08 -1.24 9.95 22.06 0.22 -1.02 16 21 C -0.12 -2.67 9.73 22.09 0.21 -2.46 16 22 C -0.03 -0.82 6.32 22.33 0.14 -0.68 16 23 Cl -0.05 -1.59 24.47 -2.72 -0.07 -1.66 16 24 C -0.18 -6.01 5.76 -21.20 -0.12 -6.13 16 25 H 0.05 1.82 5.48 -2.39 -0.01 1.80 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 2.14 7.56 -2.38 -0.02 2.12 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.40 17.57 3.23 -92.71 -0.30 17.27 16 32 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -71.07 304.34 4.20 -66.87 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.78 Total: 22.23 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.09 Total: -20.54 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -2.46 Total: -114.54 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.85 Total: 47.64 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.07 Total: -1.66 kcal Total: -71.07 4.20 -66.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.664 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds