Wall clock time and date at job start Tue Mar 31 2020 08:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35612 * 117.00350 * 2 1 4 4 C 1.39165 * 120.50122 * 0.23428 * 3 2 1 5 5 C 1.38304 * 118.62748 * 180.26773 * 4 3 2 6 6 C 1.39946 * 119.59386 * 359.74129 * 5 4 3 7 7 N 1.38906 * 119.49305 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00546 * 0.02813 * 7 6 5 9 9 C 1.52996 * 109.47463 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47073 * 179.97438 * 9 8 7 11 11 F 1.39901 * 109.47280 * 59.99899 * 10 9 8 12 12 F 1.39895 * 109.47188 * 180.02562 * 10 9 8 13 13 F 1.39903 * 109.47284 * 300.00355 * 10 9 8 14 14 N 1.31861 * 121.01025 * 0.02562 * 6 5 4 15 15 C 1.33821 * 121.47306 * 359.97438 * 14 6 5 16 16 C 1.40920 * 119.85226 * 179.97438 * 15 14 6 17 17 H 1.07994 * 119.99893 * 186.37134 * 16 15 14 18 18 C 1.40018 * 119.99700 * 6.08428 * 16 15 14 19 19 N 1.30787 * 120.00487 * 354.03116 * 18 16 15 20 20 Si 1.86800 * 119.99929 * 174.02970 * 18 16 15 21 21 H 1.48496 * 109.47320 * 5.00922 * 20 18 16 22 22 H 1.48507 * 109.46868 * 125.00786 * 20 18 16 23 23 H 1.48502 * 109.47187 * 245.00388 * 20 18 16 24 24 H 1.08999 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47284 * 300.00150 * 1 2 3 26 26 H 1.09005 * 109.46705 * 60.00321 * 1 2 3 27 27 H 1.07993 * 120.68642 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.20673 * 179.76259 * 5 4 3 29 29 H 0.96998 * 119.99876 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.46730 * 300.00044 * 8 7 6 31 31 H 1.09005 * 109.47185 * 59.99247 * 8 7 6 32 32 H 1.08995 * 109.47102 * 299.99700 * 9 8 7 33 33 H 1.09001 * 109.47071 * 60.00210 * 9 8 7 34 34 H 0.96997 * 120.00591 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3820 0.0049 5 6 1.9650 3.5931 -0.0010 6 6 3.3643 3.6106 -0.0061 7 7 4.0330 4.8281 -0.0125 8 6 3.2737 6.0810 -0.0132 9 6 4.2428 7.2648 -0.0201 10 6 3.4497 8.5732 -0.0215 11 9 2.6478 8.6337 1.1232 12 9 4.3359 9.6557 -0.0284 13 9 2.6401 8.6266 -1.1613 14 7 4.0578 2.4891 -0.0059 15 6 3.4544 1.2946 -0.0004 16 6 4.2291 0.1174 -0.0009 17 1 3.7491 -0.8448 -0.1003 18 6 5.6218 0.1959 0.1212 19 7 6.2139 1.3620 0.1184 20 14 6.6340 -1.3652 0.2883 21 1 5.7479 -2.5478 0.1425 22 1 7.6767 -1.3945 -0.7688 23 1 7.2824 -1.3941 1.6240 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.2177 2.3479 0.0084 28 1 1.4101 4.5197 -0.0012 29 1 5.0027 4.8488 -0.0165 30 1 2.6423 6.1226 -0.9008 31 1 2.6494 6.1281 0.8791 32 1 4.8738 7.2230 0.8677 33 1 4.8673 7.2180 -0.9123 34 1 7.1786 1.4163 0.2034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161823365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:10 Heat of formation + Delta-G solvation = -154.976709 kcal Electronic energy + Delta-G solvation = -22726.855598 eV Core-core repulsion = 18631.175076 eV Total energy + Delta-G solvation = -4095.680522 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.19784 -47.70810 -47.65665 -38.86277 -37.13919 -35.45900 -33.52655 -31.55739 -30.31964 -28.57224 -26.47447 -25.37006 -24.71743 -22.44973 -21.31362 -20.43666 -18.64673 -18.50072 -17.66214 -17.32534 -16.52130 -16.26005 -15.24952 -15.00778 -14.81216 -14.61936 -14.56963 -14.24327 -14.12158 -14.07371 -13.80906 -13.79661 -13.15864 -12.84800 -12.57853 -12.45686 -11.93772 -11.77775 -11.70061 -11.55456 -11.22592 -11.17798 -10.57324 -10.45040 -10.42447 -9.81880 -9.45884 -8.51261 -8.03732 -7.70792 -6.41463 -6.34996 -4.37433 2.61693 2.79429 3.10079 3.12173 3.18097 3.24976 3.55897 3.87631 3.95470 3.98517 4.34831 4.63218 4.78082 4.81802 4.91524 5.26781 5.74495 5.80370 5.83776 5.84968 5.97112 5.99941 6.09138 6.37584 6.64581 6.76690 7.18386 7.24967 7.44321 7.66654 8.15561 8.26191 8.39159 8.61084 8.77499 9.14505 10.13767 10.32714 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.004131 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.220600 B = 6776.840795 C = 8177.485883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.073 4.073 4 C -0.114 4.114 5 C -0.345 4.345 6 C 0.392 3.608 7 N -0.738 5.738 8 C 0.142 3.858 9 C -0.179 4.179 10 C 0.459 3.541 11 F -0.182 7.182 12 F -0.186 7.186 13 F -0.182 7.182 14 N -0.512 5.512 15 C 0.288 3.712 16 C -0.412 4.412 17 H 0.092 0.908 18 C 0.068 3.932 19 N -0.715 5.715 20 Si 0.908 3.092 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.273 1.273 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.398 0.602 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 9.403 -0.009 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.225 6.225 3 C -0.121 4.121 4 C -0.139 4.139 5 C -0.372 4.372 6 C 0.155 3.845 7 N -0.376 5.376 8 C 0.016 3.984 9 C -0.218 4.218 10 C 0.405 3.595 11 F -0.164 7.164 12 F -0.167 7.167 13 F -0.164 7.164 14 N -0.235 5.235 15 C 0.160 3.840 16 C -0.444 4.444 17 H 0.110 0.890 18 C -0.157 4.157 19 N -0.337 5.337 20 Si 0.732 3.268 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.198 1.198 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.233 0.767 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.888 9.472 -0.006 9.659 hybrid contribution -0.561 -0.050 0.105 0.572 sum -2.448 9.422 0.099 9.736 Atomic orbital electron populations 1.22692 0.82132 1.01549 0.99686 1.85920 1.17886 1.27858 1.90848 1.20041 0.93433 0.83140 1.15470 1.20677 0.97354 0.92323 1.03508 1.20360 0.92753 0.96444 1.27609 1.18386 0.87664 0.86434 0.92029 1.43816 1.07741 1.01076 1.84998 1.20906 0.93023 0.82254 1.02240 1.23046 1.00024 0.90504 1.08225 1.20386 0.78560 0.87047 0.73554 1.93198 1.75296 1.96860 1.51010 1.93184 1.68453 1.58842 1.96251 1.93199 1.74887 1.96873 1.51410 1.68342 1.34806 0.94951 1.25399 1.17758 0.85045 0.90968 0.90208 1.19572 0.90872 0.93280 1.40686 0.88995 1.26082 0.98659 0.97202 0.93757 1.70169 1.10036 1.24661 1.28824 0.86264 0.79677 0.82347 0.78503 1.18252 1.20027 1.19841 0.90150 0.94454 0.94471 0.88172 0.88944 0.76729 0.91798 0.91812 0.86666 0.86668 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.61 16 2 O -0.31 -7.26 9.62 -18.53 -0.18 -7.44 16 3 C -0.07 -1.85 6.74 -38.10 -0.26 -2.11 16 4 C -0.11 -2.62 9.12 -39.21 -0.36 -2.98 16 5 C -0.35 -7.83 9.33 -38.92 -0.36 -8.20 16 6 C 0.39 9.29 7.65 -155.27 -1.19 8.11 16 7 N -0.74 -13.82 5.72 -60.35 -0.35 -14.16 16 8 C 0.14 2.04 4.64 -4.04 -0.02 2.02 16 9 C -0.18 -1.90 5.37 -26.73 -0.14 -2.04 16 10 C 0.46 5.07 3.16 37.16 0.12 5.18 16 11 F -0.18 -2.19 16.80 2.25 0.04 -2.15 16 12 F -0.19 -2.06 17.32 2.25 0.04 -2.02 16 13 F -0.18 -2.19 16.80 2.25 0.04 -2.15 16 14 N -0.51 -13.82 7.90 -10.20 -0.08 -13.90 16 15 C 0.29 7.99 6.55 -84.85 -0.56 7.43 16 16 C -0.41 -11.19 8.92 -37.90 -0.34 -11.53 16 17 H 0.09 2.44 7.33 -52.49 -0.38 2.05 16 18 C 0.07 1.72 5.49 -17.33 -0.10 1.62 16 19 N -0.71 -18.51 11.48 55.55 0.64 -17.88 16 20 Si 0.91 18.64 29.56 -169.99 -5.03 13.61 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 26 H 0.04 0.60 7.70 -51.93 -0.40 0.20 16 27 H 0.10 2.00 6.43 -52.49 -0.34 1.66 16 28 H 0.09 1.86 6.67 -52.49 -0.35 1.51 16 29 H 0.40 7.20 8.59 -40.82 -0.35 6.85 16 30 H 0.06 0.94 7.58 -51.93 -0.39 0.54 16 31 H 0.06 0.94 7.58 -51.93 -0.39 0.54 16 32 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.27 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -30.02 305.60 -5.89 -35.91 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -3.41 Total: 6.45 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.21 Total: -0.87 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.21 Total: -45.95 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.18 Total: -7.44 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.32 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.02 -5.89 -35.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161823365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.066 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds