Wall clock time and date at job start Tue Mar 31 2020 08:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35612 * 117.00350 * 2 1 4 4 C 1.39165 * 120.50122 * 0.23428 * 3 2 1 5 5 C 1.38304 * 118.62748 * 180.26773 * 4 3 2 6 6 C 1.39946 * 119.59386 * 359.74129 * 5 4 3 7 7 N 1.38906 * 119.49305 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00546 * 0.02813 * 7 6 5 9 9 C 1.52996 * 109.47463 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47073 * 179.97438 * 9 8 7 11 11 F 1.39901 * 109.47280 * 59.99899 * 10 9 8 12 12 F 1.39895 * 109.47188 * 180.02562 * 10 9 8 13 13 F 1.39903 * 109.47284 * 300.00355 * 10 9 8 14 14 N 1.31861 * 121.01025 * 0.02562 * 6 5 4 15 15 C 1.33821 * 121.47306 * 359.97438 * 14 6 5 16 16 C 1.40920 * 119.85226 * 179.97438 * 15 14 6 17 17 H 1.07994 * 119.99893 * 186.37134 * 16 15 14 18 18 C 1.40018 * 119.99700 * 6.08428 * 16 15 14 19 19 N 1.30787 * 120.00487 * 354.03116 * 18 16 15 20 20 Si 1.86800 * 119.99929 * 174.02970 * 18 16 15 21 21 H 1.48496 * 109.47320 * 5.00922 * 20 18 16 22 22 H 1.48507 * 109.46868 * 125.00786 * 20 18 16 23 23 H 1.48502 * 109.47187 * 245.00388 * 20 18 16 24 24 H 1.08999 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47284 * 300.00150 * 1 2 3 26 26 H 1.09005 * 109.46705 * 60.00321 * 1 2 3 27 27 H 1.07993 * 120.68642 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.20673 * 179.76259 * 5 4 3 29 29 H 0.96998 * 119.99876 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.46730 * 300.00044 * 8 7 6 31 31 H 1.09005 * 109.47185 * 59.99247 * 8 7 6 32 32 H 1.08995 * 109.47102 * 299.99700 * 9 8 7 33 33 H 1.09001 * 109.47071 * 60.00210 * 9 8 7 34 34 H 0.96997 * 120.00591 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3820 0.0049 5 6 1.9650 3.5931 -0.0010 6 6 3.3643 3.6106 -0.0061 7 7 4.0330 4.8281 -0.0125 8 6 3.2737 6.0810 -0.0132 9 6 4.2428 7.2648 -0.0201 10 6 3.4497 8.5732 -0.0215 11 9 2.6478 8.6337 1.1232 12 9 4.3359 9.6557 -0.0284 13 9 2.6401 8.6266 -1.1613 14 7 4.0578 2.4891 -0.0059 15 6 3.4544 1.2946 -0.0004 16 6 4.2291 0.1174 -0.0009 17 1 3.7491 -0.8448 -0.1003 18 6 5.6218 0.1959 0.1212 19 7 6.2139 1.3620 0.1184 20 14 6.6340 -1.3652 0.2883 21 1 5.7479 -2.5478 0.1425 22 1 7.6767 -1.3945 -0.7688 23 1 7.2824 -1.3941 1.6240 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.2177 2.3479 0.0084 28 1 1.4101 4.5197 -0.0012 29 1 5.0027 4.8488 -0.0165 30 1 2.6423 6.1226 -0.9008 31 1 2.6494 6.1281 0.8791 32 1 4.8738 7.2230 0.8677 33 1 4.8673 7.2180 -0.9123 34 1 7.1786 1.4163 0.2034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161823365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:10 Heat of formation + Delta-G solvation = -173.513061 kcal Electronic energy + Delta-G solvation = -22727.659395 eV Core-core repulsion = 18631.175076 eV Total energy + Delta-G solvation = -4096.484319 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.10662 -48.60650 -48.58234 -40.63181 -38.75557 -36.96228 -35.28543 -32.90896 -32.16906 -30.21088 -28.01701 -26.99372 -26.06575 -23.73982 -22.88904 -22.12811 -19.55390 -19.55031 -19.19557 -18.71968 -18.22380 -17.73707 -16.69371 -16.45276 -16.34723 -16.15402 -15.69554 -15.42916 -15.23595 -15.00357 -14.84443 -14.73248 -14.72084 -14.44570 -14.12619 -14.08451 -13.31279 -13.04247 -12.98018 -12.88202 -12.81293 -12.70933 -12.44052 -12.04242 -11.94527 -11.56386 -11.24406 -10.15085 -9.90210 -9.58256 -8.26434 -8.10203 -6.31258 0.98923 1.27221 1.44244 1.57184 1.59423 1.67655 2.28260 2.45174 2.91386 2.93364 2.99773 3.07938 3.19423 3.82063 3.92273 4.04143 4.26626 4.36313 4.46630 4.53160 4.63577 4.74183 4.74561 4.76955 4.90903 4.96927 5.34283 5.50467 5.70355 5.85102 6.28657 6.41249 6.70340 6.83837 6.99546 7.33614 8.28257 8.49663 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.004131 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.220600 B = 6776.840795 C = 8177.485883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.096 4.096 4 C -0.113 4.113 5 C -0.344 4.344 6 C 0.375 3.625 7 N -0.731 5.731 8 C 0.140 3.860 9 C -0.168 4.168 10 C 0.465 3.535 11 F -0.188 7.188 12 F -0.184 7.184 13 F -0.188 7.188 14 N -0.541 5.541 15 C 0.252 3.748 16 C -0.450 4.450 17 H 0.083 0.917 18 C 0.027 3.973 19 N -0.747 5.747 20 Si 0.984 3.016 21 H -0.260 1.260 22 H -0.264 1.264 23 H -0.265 1.265 24 H 0.111 0.889 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.399 0.601 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 10.013 0.082 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.370 4.370 6 C 0.136 3.864 7 N -0.368 5.368 8 C 0.015 3.985 9 C -0.206 4.206 10 C 0.411 3.589 11 F -0.169 7.169 12 F -0.165 7.165 13 F -0.169 7.169 14 N -0.265 5.265 15 C 0.124 3.876 16 C -0.482 4.482 17 H 0.101 0.899 18 C -0.195 4.195 19 N -0.370 5.370 20 Si 0.805 3.195 21 H -0.184 1.184 22 H -0.189 1.189 23 H -0.190 1.190 24 H 0.129 0.871 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.137 0.863 29 H 0.235 0.765 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.165 10.135 0.083 10.364 hybrid contribution -0.634 -0.108 0.067 0.646 sum -2.798 10.027 0.150 10.411 Atomic orbital electron populations 1.23027 0.79097 1.04010 1.00589 1.85855 1.21058 1.27306 1.90984 1.20096 0.93259 0.84558 1.16508 1.21047 0.98930 0.91665 1.02116 1.20732 0.92719 0.97541 1.26056 1.18810 0.88619 0.87216 0.91730 1.43915 1.08062 1.00960 1.83896 1.21037 0.93655 0.81659 1.02160 1.22950 0.99240 0.88496 1.09915 1.20330 0.78312 0.87129 0.73148 1.93193 1.75516 1.96893 1.51329 1.93192 1.68346 1.58739 1.96220 1.93193 1.75109 1.96906 1.51722 1.68291 1.36092 0.95710 1.26380 1.18191 0.86727 0.91620 0.91071 1.19746 0.92285 0.93071 1.43144 0.89898 1.26892 0.99040 1.00677 0.92893 1.70225 1.10735 1.26636 1.29362 0.85136 0.77787 0.77777 0.78844 1.18359 1.18904 1.19025 0.87101 0.93410 0.93424 0.85085 0.86255 0.76548 0.91788 0.91823 0.85099 0.85085 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.83 113.37 1.11 2.04 16 2 O -0.34 -15.86 9.62 -89.23 -0.86 -16.72 16 3 C -0.10 -4.95 6.74 23.23 0.16 -4.80 16 4 C -0.11 -5.09 9.12 22.51 0.21 -4.89 16 5 C -0.34 -15.24 9.33 22.70 0.21 -15.03 16 6 C 0.37 17.74 7.65 133.45 1.02 18.76 16 7 N -0.73 -26.77 5.72 -344.84 -1.97 -28.74 16 8 C 0.14 3.76 4.64 86.38 0.40 4.16 16 9 C -0.17 -3.16 5.37 30.59 0.16 -2.99 16 10 C 0.47 9.26 3.16 71.98 0.23 9.48 16 11 F -0.19 -4.15 16.80 44.97 0.76 -3.39 16 12 F -0.18 -3.66 17.32 44.97 0.78 -2.88 16 13 F -0.19 -4.14 16.80 44.97 0.76 -3.39 16 14 N -0.54 -29.89 7.90 -186.17 -1.47 -31.36 16 15 C 0.25 14.43 6.55 40.23 0.26 14.69 16 16 C -0.45 -25.40 8.92 23.36 0.21 -25.19 16 17 H 0.08 4.61 7.33 -2.91 -0.02 4.59 16 18 C 0.03 1.39 5.49 85.28 0.47 1.85 16 19 N -0.75 -39.52 11.48 21.84 0.25 -39.27 16 20 Si 0.98 38.84 29.56 68.60 2.03 40.87 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 24 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 25 H 0.05 1.45 7.68 -2.39 -0.02 1.43 16 26 H 0.05 1.45 7.70 -2.38 -0.02 1.43 16 27 H 0.13 4.93 6.43 -2.91 -0.02 4.91 16 28 H 0.12 4.53 6.67 -2.91 -0.02 4.51 16 29 H 0.40 14.24 8.59 -92.71 -0.80 13.45 16 30 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 31 H 0.06 1.74 7.58 -2.38 -0.02 1.72 16 32 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.28 13.15 8.30 -92.71 -0.77 12.39 16 Total: -1.00 -66.59 305.60 5.07 -61.52 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.36 Total: 25.27 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 4.44 Total: -1.90 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -3.19 Total: -99.37 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.86 Total: -16.72 kcal Atomic # 9 Polarization: -11.95 SS G_CDS: 2.29 Total: -9.66 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -66.59 5.07 -61.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161823365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.996 kcal (2) G-P(sol) polarization free energy of solvation -66.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds