Wall clock time and date at job start Tue Mar 31 2020 08:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36346 * 125.63386 * 2 1 4 4 C 1.34847 * 108.21476 * 180.02562 * 3 2 1 5 5 C 1.40887 * 107.42089 * 359.76474 * 4 3 2 6 6 C 1.34851 * 107.41610 * 0.38159 * 5 4 3 7 7 C 1.50692 * 125.89014 * 179.88702 * 6 5 4 8 8 N 1.46500 * 109.47348 * 94.69317 * 7 6 5 9 9 C 1.38747 * 119.99904 * 179.97438 * 8 7 6 10 10 C 1.38681 * 120.28676 * 359.97438 * 9 8 7 11 11 C 1.38318 * 120.01505 * 180.02562 * 10 9 8 12 12 Cl 1.73596 * 119.70188 * 179.97438 * 11 10 9 13 13 C 1.39061 * 120.59378 * 0.02562 * 11 10 9 14 14 C 1.36412 * 120.57568 * 359.69266 * 13 11 10 15 15 C 1.40742 * 119.96282 * 0.56082 * 14 13 11 16 16 C 1.41029 * 120.29066 * 179.74321 * 15 14 13 17 17 H 1.07997 * 119.99725 * 154.26162 * 16 15 14 18 18 C 1.39910 * 119.99673 * 334.26530 * 16 15 14 19 19 N 1.30892 * 120.00194 * 334.63806 * 18 16 15 20 20 Si 1.86794 * 119.99811 * 154.63752 * 18 16 15 21 21 H 1.48495 * 109.47370 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47415 * 300.00188 * 20 18 16 23 23 H 1.48499 * 109.47114 * 59.99896 * 20 18 16 24 24 H 1.08997 * 109.47517 * 269.97966 * 1 2 3 25 25 H 1.09005 * 109.46974 * 29.98196 * 1 2 3 26 26 H 1.09000 * 109.47168 * 149.97642 * 1 2 3 27 27 H 1.08002 * 125.89317 * 359.97438 * 3 2 1 28 28 H 1.08009 * 126.28712 * 179.97438 * 4 3 2 29 29 H 1.08004 * 126.29125 * 180.24111 * 5 4 3 30 30 H 1.08995 * 109.47376 * 334.68842 * 7 6 5 31 31 H 1.09007 * 109.47268 * 214.68915 * 7 6 5 32 32 H 0.97001 * 119.99959 * 359.97438 * 8 7 6 33 33 H 1.07997 * 119.99282 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.71001 * 179.97438 * 13 11 10 35 35 H 1.08000 * 120.01683 * 180.28577 * 14 13 11 36 36 H 0.97002 * 120.00114 * 354.17903 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7045 -0.0006 5 6 3.5460 -0.7044 0.0046 6 6 2.2593 -1.1081 -0.0005 7 6 1.7819 -2.5374 -0.0001 8 7 1.5138 -2.9623 1.3761 9 6 1.0603 -4.2490 1.6289 10 6 0.8583 -5.1374 0.5834 11 6 0.4055 -6.4186 0.8418 12 17 0.1548 -7.5238 -0.4732 13 6 0.1484 -6.8289 2.1454 14 6 0.3443 -5.9768 3.1924 15 6 0.7992 -4.6660 2.9563 16 6 0.9989 -3.7776 4.0332 17 1 1.7053 -2.9660 3.9398 18 6 0.2819 -3.9477 5.2225 19 7 -0.8763 -4.5573 5.2070 20 14 0.9774 -3.3047 6.8325 21 1 0.0326 -3.6096 7.9368 22 1 2.2829 -3.9584 7.1040 23 1 1.1701 -1.8354 6.7368 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.9171 2.1325 -0.0004 28 1 4.4165 1.3438 -0.0011 29 1 4.4166 -1.3436 0.0092 30 1 2.5498 -3.1771 -0.4348 31 1 0.8679 -2.6153 -0.5889 32 1 1.6534 -2.3442 2.1105 33 1 1.0537 -4.8286 -0.4329 34 1 -0.2051 -7.8324 2.3308 35 1 0.1461 -6.3064 4.2016 36 1 -1.2770 -4.8161 4.3624 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162711353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:13 Heat of formation + Delta-G solvation = 55.642957 kcal Electronic energy + Delta-G solvation = -20149.425773 eV Core-core repulsion = 17045.444309 eV Total energy + Delta-G solvation = -3103.981463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.12000 -38.30592 -35.58973 -34.84511 -33.58778 -32.76298 -30.43093 -29.24882 -27.66454 -26.29901 -25.09931 -24.55358 -21.14449 -20.48177 -20.41166 -19.07274 -17.99814 -17.01400 -16.13390 -15.42010 -15.01418 -14.50610 -14.31570 -14.01029 -13.66012 -13.18708 -13.12771 -13.05142 -12.54454 -12.44341 -12.22167 -12.13028 -11.98433 -11.97176 -11.49744 -11.27789 -10.95034 -10.56200 -10.46245 -10.26916 -9.81157 -9.60616 -9.03882 -8.98924 -8.50588 -7.99121 -7.60662 -7.30821 -6.58762 -4.33861 2.26428 2.56451 2.85959 3.03444 3.10048 3.12021 3.19619 3.32289 3.38458 3.97515 4.47143 4.57234 4.80098 4.92104 5.15305 5.17660 5.34310 5.45429 5.54421 5.69684 5.84181 5.89563 6.04919 6.24205 6.35869 6.45000 6.64849 6.81923 7.03371 7.12094 7.21194 7.32595 7.36263 7.44205 7.64655 7.74107 7.93041 8.03159 8.25424 8.65248 8.71731 8.86258 10.01479 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.006554 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.036776 B = 4271.164653 C = 6617.624449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.441 5.441 3 C -0.016 4.016 4 C -0.204 4.204 5 C -0.183 4.183 6 C 0.007 3.993 7 C 0.204 3.796 8 N -0.741 5.741 9 C 0.122 3.878 10 C -0.158 4.158 11 C -0.118 4.118 12 Cl -0.133 7.133 13 C -0.105 4.105 14 C -0.196 4.196 15 C 0.064 3.936 16 C -0.517 4.517 17 H 0.073 0.927 18 C 0.041 3.959 19 N -0.796 5.796 20 Si 1.061 2.939 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.277 1.277 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.399 0.601 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 8.081 -6.944 10.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.117 5.117 3 C -0.147 4.147 4 C -0.229 4.229 5 C -0.208 4.208 6 C -0.105 4.105 7 C 0.079 3.921 8 N -0.376 5.376 9 C 0.022 3.978 10 C -0.183 4.183 11 C -0.146 4.146 12 Cl -0.105 7.105 13 C -0.125 4.125 14 C -0.217 4.217 15 C 0.059 3.941 16 C -0.546 4.546 17 H 0.091 0.909 18 C -0.181 4.181 19 N -0.420 5.420 20 Si 0.885 3.115 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.203 1.203 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.176 0.824 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.235 0.765 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.784 8.032 -5.607 9.956 hybrid contribution 0.266 0.106 -1.603 1.628 sum 2.050 8.137 -7.209 11.063 Atomic orbital electron populations 1.22018 0.77378 1.03929 1.03696 1.43941 1.06136 1.05729 1.55848 1.21770 0.90639 0.91216 1.11049 1.20841 0.95819 0.95054 1.11176 1.20735 0.95257 0.95040 1.09788 1.20427 0.90488 0.88564 1.10988 1.19415 0.99050 0.87406 0.86278 1.43984 1.76156 1.12135 1.05316 1.17610 1.02835 0.84718 0.92643 1.19811 1.09010 0.92730 0.96733 1.19805 1.16777 0.91357 0.86643 1.98220 1.96391 1.64832 1.51026 1.20081 1.02743 0.98779 0.90942 1.20531 1.10716 0.93098 0.97395 1.17381 0.93913 0.92628 0.90149 1.20202 1.22544 1.13144 0.98676 0.90943 1.26894 0.93664 0.93800 1.03772 1.70478 1.12631 1.25199 1.33652 0.83683 0.76716 0.76859 0.74246 1.19865 1.19964 1.20300 0.90610 0.90192 0.89762 0.82378 0.84889 0.84767 0.91367 0.93221 0.76488 0.88190 0.88547 0.86929 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.92 59.85 0.65 1.44 16 2 N -0.44 -5.94 3.15 -119.90 -0.38 -6.32 16 3 C -0.02 -0.20 11.43 -16.75 -0.19 -0.39 16 4 C -0.20 -2.69 10.86 -39.78 -0.43 -3.13 16 5 C -0.18 -2.70 10.76 -39.78 -0.43 -3.13 16 6 C 0.01 0.11 6.26 -81.79 -0.51 -0.41 16 7 C 0.20 3.31 5.06 -5.20 -0.03 3.29 16 8 N -0.74 -14.42 5.62 -59.39 -0.33 -14.76 16 9 C 0.12 2.74 6.68 -83.30 -0.56 2.18 16 10 C -0.16 -3.43 9.07 -39.39 -0.36 -3.78 16 11 C -0.12 -2.60 6.33 -39.25 -0.25 -2.85 16 12 Cl -0.13 -2.55 28.94 -51.86 -1.50 -4.05 16 13 C -0.11 -2.40 9.74 -39.93 -0.39 -2.79 16 14 C -0.20 -4.82 7.89 -39.29 -0.31 -5.13 16 15 C 0.06 1.59 5.31 -106.62 -0.57 1.03 16 16 C -0.52 -12.79 8.43 -37.90 -0.32 -13.11 16 17 H 0.07 1.75 6.75 -52.49 -0.35 1.39 16 18 C 0.04 0.98 4.93 -17.33 -0.09 0.90 16 19 N -0.80 -20.32 12.32 55.55 0.68 -19.63 16 20 Si 1.06 20.95 30.00 -169.99 -5.10 15.85 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.93 7.12 -51.93 -0.37 0.57 16 27 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16 31 H 0.05 0.79 7.02 -51.93 -0.36 0.42 16 32 H 0.40 8.08 6.69 -40.82 -0.27 7.81 16 33 H 0.10 1.98 6.73 -52.49 -0.35 1.63 16 34 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.11 2.86 6.50 -52.49 -0.34 2.52 16 36 H 0.30 7.86 6.69 -40.82 -0.27 7.59 16 LS Contribution 318.99 15.07 4.81 4.81 Total: -1.00 -26.61 318.99 -9.66 -36.28 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -4.07 Total: 13.70 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -3.77 Total: -25.88 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.03 Total: -40.71 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.10 Total: 15.85 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -1.50 Total: -4.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.61 -9.66 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162711353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.919 kcal (2) G-P(sol) polarization free energy of solvation -26.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds