Wall clock time and date at job start Tue Mar 31 2020 08:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36346 * 125.63386 * 2 1 4 4 C 1.34847 * 108.21476 * 180.02562 * 3 2 1 5 5 C 1.40887 * 107.42089 * 359.76474 * 4 3 2 6 6 C 1.34851 * 107.41610 * 0.38159 * 5 4 3 7 7 C 1.50692 * 125.89014 * 179.88702 * 6 5 4 8 8 N 1.46500 * 109.47348 * 94.69317 * 7 6 5 9 9 C 1.38747 * 119.99904 * 179.97438 * 8 7 6 10 10 C 1.38681 * 120.28676 * 359.97438 * 9 8 7 11 11 C 1.38318 * 120.01505 * 180.02562 * 10 9 8 12 12 Cl 1.73596 * 119.70188 * 179.97438 * 11 10 9 13 13 C 1.39061 * 120.59378 * 0.02562 * 11 10 9 14 14 C 1.36412 * 120.57568 * 359.69266 * 13 11 10 15 15 C 1.40742 * 119.96282 * 0.56082 * 14 13 11 16 16 C 1.41029 * 120.29066 * 179.74321 * 15 14 13 17 17 H 1.07997 * 119.99725 * 154.26162 * 16 15 14 18 18 C 1.39910 * 119.99673 * 334.26530 * 16 15 14 19 19 N 1.30892 * 120.00194 * 334.63806 * 18 16 15 20 20 Si 1.86794 * 119.99811 * 154.63752 * 18 16 15 21 21 H 1.48495 * 109.47370 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47415 * 300.00188 * 20 18 16 23 23 H 1.48499 * 109.47114 * 59.99896 * 20 18 16 24 24 H 1.08997 * 109.47517 * 269.97966 * 1 2 3 25 25 H 1.09005 * 109.46974 * 29.98196 * 1 2 3 26 26 H 1.09000 * 109.47168 * 149.97642 * 1 2 3 27 27 H 1.08002 * 125.89317 * 359.97438 * 3 2 1 28 28 H 1.08009 * 126.28712 * 179.97438 * 4 3 2 29 29 H 1.08004 * 126.29125 * 180.24111 * 5 4 3 30 30 H 1.08995 * 109.47376 * 334.68842 * 7 6 5 31 31 H 1.09007 * 109.47268 * 214.68915 * 7 6 5 32 32 H 0.97001 * 119.99959 * 359.97438 * 8 7 6 33 33 H 1.07997 * 119.99282 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.71001 * 179.97438 * 13 11 10 35 35 H 1.08000 * 120.01683 * 180.28577 * 14 13 11 36 36 H 0.97002 * 120.00114 * 354.17903 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7045 -0.0006 5 6 3.5460 -0.7044 0.0046 6 6 2.2593 -1.1081 -0.0005 7 6 1.7819 -2.5374 -0.0001 8 7 1.5138 -2.9623 1.3761 9 6 1.0603 -4.2490 1.6289 10 6 0.8583 -5.1374 0.5834 11 6 0.4055 -6.4186 0.8418 12 17 0.1548 -7.5238 -0.4732 13 6 0.1484 -6.8289 2.1454 14 6 0.3443 -5.9768 3.1924 15 6 0.7992 -4.6660 2.9563 16 6 0.9989 -3.7776 4.0332 17 1 1.7053 -2.9660 3.9398 18 6 0.2819 -3.9477 5.2225 19 7 -0.8763 -4.5573 5.2070 20 14 0.9774 -3.3047 6.8325 21 1 0.0326 -3.6096 7.9368 22 1 2.2829 -3.9584 7.1040 23 1 1.1701 -1.8354 6.7368 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.9171 2.1325 -0.0004 28 1 4.4165 1.3438 -0.0011 29 1 4.4166 -1.3436 0.0092 30 1 2.5498 -3.1771 -0.4348 31 1 0.8679 -2.6153 -0.5889 32 1 1.6534 -2.3442 2.1105 33 1 1.0537 -4.8286 -0.4329 34 1 -0.2051 -7.8324 2.3308 35 1 0.1461 -6.3064 4.2016 36 1 -1.2770 -4.8161 4.3624 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162711353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:12 Heat of formation + Delta-G solvation = 43.831127 kcal Electronic energy + Delta-G solvation = -20149.937972 eV Core-core repulsion = 17045.444309 eV Total energy + Delta-G solvation = -3104.493663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.15513 -40.05883 -37.25313 -36.47294 -35.35189 -33.73030 -31.88485 -31.02328 -29.17276 -27.22727 -26.85250 -25.96626 -22.91218 -22.13547 -21.49595 -20.24221 -19.73373 -18.32731 -17.61100 -16.86943 -16.43684 -16.01088 -15.57645 -15.50970 -15.21647 -14.74250 -14.48185 -14.35076 -14.10943 -13.98739 -13.68561 -13.28466 -13.17554 -12.96359 -12.92374 -12.76341 -12.57761 -12.19715 -12.03809 -11.92504 -11.51536 -11.37598 -10.81892 -10.68690 -9.52915 -9.42200 -9.19280 -9.05556 -8.30867 -6.20914 0.75584 1.04492 1.17911 1.51568 1.61258 1.64135 1.78860 2.04703 2.07811 2.33974 2.67518 3.05330 3.52297 3.75756 3.97090 4.17325 4.25852 4.31831 4.39338 4.45947 4.54967 4.67982 4.71372 4.80660 4.86407 5.01912 5.25043 5.35137 5.39230 5.40238 5.51501 5.77260 5.87637 6.06292 6.09212 6.20309 6.26669 6.45918 6.49844 6.90157 6.95081 7.10801 8.10893 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.006554 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.036776 B = 4271.164653 C = 6617.624449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.445 5.445 3 C -0.007 4.007 4 C -0.220 4.220 5 C -0.195 4.195 6 C -0.018 4.018 7 C 0.209 3.791 8 N -0.736 5.736 9 C 0.126 3.874 10 C -0.166 4.166 11 C -0.112 4.112 12 Cl -0.104 7.104 13 C -0.119 4.119 14 C -0.208 4.208 15 C 0.035 3.965 16 C -0.539 4.539 17 H 0.071 0.929 18 C 0.007 3.993 19 N -0.820 5.820 20 Si 1.109 2.891 21 H -0.275 1.275 22 H -0.267 1.267 23 H -0.260 1.260 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.194 0.806 28 H 0.152 0.848 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.394 0.606 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 9.554 -8.023 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.121 5.121 3 C -0.138 4.138 4 C -0.244 4.244 5 C -0.221 4.221 6 C -0.129 4.129 7 C 0.084 3.916 8 N -0.369 5.369 9 C 0.024 3.976 10 C -0.190 4.190 11 C -0.140 4.140 12 Cl -0.075 7.075 13 C -0.139 4.139 14 C -0.229 4.229 15 C 0.030 3.970 16 C -0.568 4.568 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.444 5.444 20 Si 0.927 3.073 21 H -0.199 1.199 22 H -0.192 1.192 23 H -0.184 1.184 24 H 0.085 0.915 25 H 0.131 0.869 26 H 0.098 0.902 27 H 0.211 0.789 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.229 0.771 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.256 9.514 -6.728 11.869 hybrid contribution 0.142 -0.374 -1.474 1.527 sum 2.398 9.140 -8.201 12.512 Atomic orbital electron populations 1.22170 0.76139 1.05414 1.03581 1.44150 1.07026 1.05533 1.55357 1.22385 0.90319 0.92317 1.08788 1.21152 0.97134 0.94513 1.11601 1.20970 0.95251 0.96234 1.09680 1.20264 0.91067 0.88448 1.13159 1.19439 0.99309 0.88534 0.84299 1.44119 1.75179 1.10908 1.06711 1.17766 1.01656 0.85979 0.92153 1.20025 1.08995 0.92544 0.97485 1.20001 1.14774 0.91949 0.87275 1.98226 1.96178 1.63786 1.49340 1.20209 1.03359 0.99244 0.91126 1.20478 1.11596 0.93691 0.97140 1.17669 0.95044 0.92945 0.91388 1.20317 1.23227 1.13710 0.99572 0.91048 1.28135 0.93112 0.93090 1.06606 1.70586 1.13741 1.27534 1.32552 0.83082 0.76156 0.77346 0.70676 1.19938 1.19243 1.18441 0.91468 0.86851 0.90248 0.78945 0.83006 0.84798 0.91192 0.92608 0.77082 0.86148 0.87293 0.88713 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 10.92 127.77 1.39 2.75 16 2 N -0.45 -11.12 3.15 -533.26 -1.68 -12.80 16 3 C -0.01 -0.16 11.43 83.21 0.95 0.80 16 4 C -0.22 -5.33 10.86 22.14 0.24 -5.09 16 5 C -0.20 -5.56 10.76 22.14 0.24 -5.32 16 6 C -0.02 -0.52 6.26 41.08 0.26 -0.26 16 7 C 0.21 6.60 5.06 85.63 0.43 7.03 16 8 N -0.74 -28.57 5.62 -341.80 -1.92 -30.49 16 9 C 0.13 5.68 6.68 38.98 0.26 5.95 16 10 C -0.17 -7.02 9.07 22.39 0.20 -6.82 16 11 C -0.11 -4.83 6.33 22.49 0.14 -4.68 16 12 Cl -0.10 -3.77 28.94 -2.72 -0.08 -3.85 16 13 C -0.12 -5.46 9.74 22.04 0.21 -5.24 16 14 C -0.21 -10.50 7.89 22.46 0.18 -10.33 16 15 C 0.03 1.75 5.31 -21.16 -0.11 1.64 16 16 C -0.54 -27.31 8.43 23.36 0.20 -27.11 16 17 H 0.07 3.51 6.75 -2.91 -0.02 3.50 16 18 C 0.01 0.33 4.93 85.24 0.42 0.75 16 19 N -0.82 -43.23 12.32 21.82 0.27 -42.96 16 20 Si 1.11 42.45 30.00 68.60 2.06 44.51 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 22 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.08 1.65 7.12 -2.39 -0.02 1.63 16 27 H 0.19 2.75 8.06 -2.91 -0.02 2.72 16 28 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 29 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.07 2.19 7.95 -2.39 -0.02 2.17 16 31 H 0.06 1.70 7.02 -2.38 -0.02 1.68 16 32 H 0.39 16.08 6.69 -92.71 -0.62 15.46 16 33 H 0.12 4.55 6.73 -2.91 -0.02 4.53 16 34 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 35 H 0.09 5.04 6.50 -2.91 -0.02 5.03 16 36 H 0.28 15.60 6.69 -92.71 -0.62 14.98 16 Total: -1.00 -57.40 318.99 4.30 -53.10 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: 0.64 Total: 38.42 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 5.02 Total: -45.94 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.33 Total: -86.25 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.06 Total: 44.51 kcal Atomic # 17 Polarization: -3.77 SS G_CDS: -0.08 Total: -3.85 kcal Total: -57.40 4.30 -53.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162711353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.931 kcal (2) G-P(sol) polarization free energy of solvation -57.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds