Wall clock time and date at job start Tue Mar 31 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86798 * 120.00338 * 2 1 4 4 H 1.48504 * 109.46789 * 274.98790 * 3 2 1 5 5 H 1.48503 * 109.46659 * 34.98129 * 3 2 1 6 6 H 1.48496 * 109.47398 * 154.98193 * 3 2 1 7 7 C 1.40136 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99921 * 186.15147 * 7 2 1 9 9 C 1.46107 * 120.00234 * 6.15474 * 7 2 1 10 10 O 1.21758 * 119.99852 * 353.93267 * 9 7 2 11 11 N 1.34770 * 120.00328 * 173.92772 * 9 7 2 12 12 C 1.39395 * 120.00287 * 180.02562 * 11 9 7 13 13 N 1.31359 * 125.61697 * 359.97438 * 12 11 9 14 14 N 1.40438 * 106.73637 * 179.97438 * 13 12 11 15 15 H 0.97006 * 126.76552 * 180.25961 * 14 13 12 16 16 C 1.34478 * 106.47189 * 0.02562 * 14 13 12 17 17 C 1.50696 * 125.88846 * 179.97438 * 16 14 13 18 18 C 1.50691 * 109.47449 * 124.99700 * 17 16 14 19 19 C 1.38267 * 119.98959 * 90.00031 * 18 17 16 20 20 C 1.38223 * 120.05576 * 180.02562 * 19 18 17 21 21 C 1.38222 * 120.02119 * 359.95595 * 20 19 18 22 22 C 1.38432 * 119.97707 * 0.02562 * 21 20 19 23 23 F 1.35100 * 120.02645 * 179.97438 * 22 21 20 24 24 C 1.38178 * 119.98767 * 269.72832 * 18 17 16 25 25 N 1.30825 * 108.23155 * 359.97438 * 16 14 13 26 26 H 0.96994 * 119.99563 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00093 * 0.02562 * 11 9 7 28 28 H 1.09003 * 109.47114 * 245.00218 * 17 16 14 29 29 H 1.09001 * 109.46807 * 4.99663 * 17 16 14 30 30 H 1.08008 * 119.97193 * 0.02562 * 19 18 17 31 31 H 1.08000 * 119.99131 * 179.97438 * 20 19 18 32 32 H 1.08005 * 120.00816 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.01478 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3825 2.1071 -1.3948 5 1 1.4944 2.6199 0.8027 6 1 3.5866 1.4120 0.5921 7 6 2.0070 -1.2136 0.0005 8 1 3.0824 -1.2163 0.1008 9 6 1.2828 -2.4754 -0.1346 10 8 0.0652 -2.4813 -0.1365 11 7 1.9624 -3.6327 -0.2571 12 6 1.2714 -4.8364 -0.3866 13 7 -0.0352 -4.9706 -0.4022 14 7 -0.2991 -6.3421 -0.5497 15 1 -1.1715 -6.7634 -0.5994 16 6 0.8958 -6.9556 -0.6139 17 6 1.1207 -8.4373 -0.7721 18 6 2.0027 -8.6867 -1.9682 19 6 3.3765 -8.7286 -1.8171 20 6 4.1868 -8.9568 -2.9133 21 6 3.6244 -9.1442 -4.1620 22 6 2.2492 -9.1028 -4.3145 23 9 1.6985 -9.2853 -5.5346 24 6 1.4381 -8.8790 -3.2146 25 7 1.8295 -6.0446 -0.5154 26 1 -0.4849 0.8400 0.0004 27 1 2.9324 -3.6281 -0.2553 28 1 1.6032 -8.8291 0.1233 29 1 0.1627 -8.9367 -0.9166 30 1 3.8167 -8.5830 -0.8416 31 1 5.2598 -8.9889 -2.7942 32 1 4.2579 -9.3221 -5.0185 33 1 0.3648 -8.8510 -3.3316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162748674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:52 Heat of formation + Delta-G solvation = 33.641919 kcal Electronic energy + Delta-G solvation = -21453.390092 eV Core-core repulsion = 17816.577874 eV Total energy + Delta-G solvation = -3636.812218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.01440 -41.52696 -39.24334 -37.42351 -34.08260 -33.22080 -32.45336 -31.28762 -30.71530 -29.88645 -27.13899 -26.37055 -22.92632 -22.61285 -22.05517 -20.34067 -19.29417 -18.03110 -17.52314 -16.77503 -16.48255 -16.31263 -15.72057 -15.48667 -15.25597 -15.14647 -14.37737 -14.19750 -13.73988 -13.57628 -13.53640 -12.70345 -12.53295 -12.43002 -12.22189 -11.84367 -11.44354 -11.30206 -11.12819 -11.09033 -10.60272 -10.30535 -10.09980 -9.41079 -9.29570 -9.13081 -8.89764 -8.79895 -7.75905 -7.56158 -6.32692 -4.78296 0.96001 1.04944 2.17218 3.08540 3.09824 3.17536 3.21331 3.42599 3.55971 3.85654 4.03997 4.14699 4.43777 4.53718 4.58165 4.81579 4.84839 4.93568 5.04673 5.18036 5.38182 5.58814 5.63806 5.71473 5.89509 5.92448 6.14268 6.30297 6.43780 6.72228 6.89367 7.32771 7.42578 7.67635 7.99855 8.12806 8.62172 8.88757 9.36852 10.43054 10.60629 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.003342 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.959972 B = 8375.699836 C = 8766.346605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.086 3.914 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.540 3.460 10 O -0.530 6.530 11 N -0.645 5.645 12 C 0.460 3.540 13 N -0.291 5.291 14 N -0.494 5.494 15 H 0.432 0.568 16 C 0.279 3.721 17 C 0.003 3.997 18 C -0.047 4.047 19 C -0.099 4.099 20 C -0.091 4.091 21 C -0.154 4.154 22 C 0.094 3.906 23 F -0.142 7.142 24 C -0.146 4.146 25 N -0.557 5.557 26 H 0.272 0.728 27 H 0.404 0.596 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 -19.574 -4.068 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.135 4.135 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.093 0.907 9 C 0.344 3.656 10 O -0.406 6.406 11 N -0.300 5.300 12 C 0.091 3.909 13 N -0.128 5.128 14 N -0.213 5.213 15 H 0.277 0.723 16 C -0.001 4.001 17 C -0.036 4.036 18 C -0.048 4.048 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.173 4.173 22 C 0.075 3.925 23 F -0.121 7.121 24 C -0.165 4.165 25 N -0.292 5.292 26 H 0.083 0.917 27 H 0.239 0.761 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.902 -18.730 -4.019 19.774 hybrid contribution 0.291 0.387 -0.394 0.624 sum 5.193 -18.343 -4.414 19.568 Atomic orbital electron populations 1.70002 1.07202 1.27810 1.33767 1.25741 0.94699 1.00508 0.92550 0.86222 0.80169 0.80820 0.78815 1.19643 1.20319 1.18652 1.20729 0.94374 0.88526 1.53535 0.90682 1.18586 0.87751 0.81412 0.77830 1.90739 1.13228 1.84246 1.52375 1.43812 1.09620 1.01361 1.75207 1.20960 0.87388 0.87229 0.95305 1.79173 1.13623 0.88346 1.31662 1.48201 1.08259 1.06438 1.58435 0.72344 1.23602 0.82883 0.95662 0.97940 1.19035 1.00578 0.86311 0.97715 1.19282 0.94155 0.98210 0.93196 1.21140 0.92535 0.98228 0.99806 1.21016 1.00346 0.98001 0.91547 1.21161 0.93035 1.03828 0.99266 1.17631 0.91774 1.02882 0.80201 1.91496 1.86145 1.92864 1.41587 1.21003 1.00446 1.03438 0.91631 1.70088 1.32502 0.97969 1.28615 0.91719 0.76092 0.87193 0.88534 0.84721 0.84853 0.84921 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.56 11.85 55.55 0.66 -21.90 16 2 C 0.09 2.37 5.50 -17.35 -0.10 2.27 16 3 Si 0.92 19.78 29.56 -169.99 -5.03 14.75 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.54 -14.94 9.53 -35.72 -0.34 -15.28 16 8 H 0.07 1.88 7.86 -52.48 -0.41 1.47 16 9 C 0.54 15.73 7.70 -13.11 -0.10 15.63 16 10 O -0.53 -17.47 13.72 5.14 0.07 -17.40 16 11 N -0.64 -15.78 5.41 -14.23 -0.08 -15.86 16 12 C 0.46 10.76 8.81 -321.23 -2.83 7.92 16 13 N -0.29 -6.95 10.97 29.98 0.33 -6.62 16 14 N -0.49 -8.23 7.44 32.63 0.24 -7.98 16 15 H 0.43 5.28 8.96 -182.33 -1.63 3.65 16 16 C 0.28 4.22 7.49 -155.66 -1.17 3.05 16 17 C 0.00 0.03 5.97 -29.04 -0.17 -0.14 16 18 C -0.05 -0.49 5.09 -104.64 -0.53 -1.02 16 19 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 20 C -0.09 -0.83 10.04 -39.59 -0.40 -1.22 16 21 C -0.15 -1.52 10.03 -39.52 -0.40 -1.91 16 22 C 0.09 1.07 7.30 -39.42 -0.29 0.79 16 23 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 24 C -0.15 -1.58 9.68 -39.51 -0.38 -1.96 16 25 N -0.56 -10.60 11.17 -11.12 -0.12 -10.72 16 26 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 27 H 0.40 8.52 8.80 -40.82 -0.36 8.16 16 28 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 307.85 15.07 4.64 4.64 Total: -1.00 -38.07 307.85 -10.41 -48.47 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.07 Total: 7.56 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -7.09 Total: 6.76 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 1.03 Total: -63.09 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.07 Total: -17.40 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -38.07 -10.41 -48.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162748674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.113 kcal (2) G-P(sol) polarization free energy of solvation -38.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds