Wall clock time and date at job start Tue Mar 31 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86798 * 120.00338 * 2 1 4 4 H 1.48504 * 109.46789 * 274.98790 * 3 2 1 5 5 H 1.48503 * 109.46659 * 34.98129 * 3 2 1 6 6 H 1.48496 * 109.47398 * 154.98193 * 3 2 1 7 7 C 1.40136 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99921 * 186.15147 * 7 2 1 9 9 C 1.46107 * 120.00234 * 6.15474 * 7 2 1 10 10 O 1.21758 * 119.99852 * 353.93267 * 9 7 2 11 11 N 1.34770 * 120.00328 * 173.92772 * 9 7 2 12 12 C 1.39395 * 120.00287 * 180.02562 * 11 9 7 13 13 N 1.31359 * 125.61697 * 359.97438 * 12 11 9 14 14 N 1.40438 * 106.73637 * 179.97438 * 13 12 11 15 15 H 0.97006 * 126.76552 * 180.25961 * 14 13 12 16 16 C 1.34478 * 106.47189 * 0.02562 * 14 13 12 17 17 C 1.50696 * 125.88846 * 179.97438 * 16 14 13 18 18 C 1.50691 * 109.47449 * 124.99700 * 17 16 14 19 19 C 1.38267 * 119.98959 * 90.00031 * 18 17 16 20 20 C 1.38223 * 120.05576 * 180.02562 * 19 18 17 21 21 C 1.38222 * 120.02119 * 359.95595 * 20 19 18 22 22 C 1.38432 * 119.97707 * 0.02562 * 21 20 19 23 23 F 1.35100 * 120.02645 * 179.97438 * 22 21 20 24 24 C 1.38178 * 119.98767 * 269.72832 * 18 17 16 25 25 N 1.30825 * 108.23155 * 359.97438 * 16 14 13 26 26 H 0.96994 * 119.99563 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00093 * 0.02562 * 11 9 7 28 28 H 1.09003 * 109.47114 * 245.00218 * 17 16 14 29 29 H 1.09001 * 109.46807 * 4.99663 * 17 16 14 30 30 H 1.08008 * 119.97193 * 0.02562 * 19 18 17 31 31 H 1.08000 * 119.99131 * 179.97438 * 20 19 18 32 32 H 1.08005 * 120.00816 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.01478 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3825 2.1071 -1.3948 5 1 1.4944 2.6199 0.8027 6 1 3.5866 1.4120 0.5921 7 6 2.0070 -1.2136 0.0005 8 1 3.0824 -1.2163 0.1008 9 6 1.2828 -2.4754 -0.1346 10 8 0.0652 -2.4813 -0.1365 11 7 1.9624 -3.6327 -0.2571 12 6 1.2714 -4.8364 -0.3866 13 7 -0.0352 -4.9706 -0.4022 14 7 -0.2991 -6.3421 -0.5497 15 1 -1.1715 -6.7634 -0.5994 16 6 0.8958 -6.9556 -0.6139 17 6 1.1207 -8.4373 -0.7721 18 6 2.0027 -8.6867 -1.9682 19 6 3.3765 -8.7286 -1.8171 20 6 4.1868 -8.9568 -2.9133 21 6 3.6244 -9.1442 -4.1620 22 6 2.2492 -9.1028 -4.3145 23 9 1.6985 -9.2853 -5.5346 24 6 1.4381 -8.8790 -3.2146 25 7 1.8295 -6.0446 -0.5154 26 1 -0.4849 0.8400 0.0004 27 1 2.9324 -3.6281 -0.2553 28 1 1.6032 -8.8291 0.1233 29 1 0.1627 -8.9367 -0.9166 30 1 3.8167 -8.5830 -0.8416 31 1 5.2598 -8.9889 -2.7942 32 1 4.2579 -9.3221 -5.0185 33 1 0.3648 -8.8510 -3.3316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162748674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:52 Heat of formation + Delta-G solvation = 8.449043 kcal Electronic energy + Delta-G solvation = -21454.482537 eV Core-core repulsion = 17816.577874 eV Total energy + Delta-G solvation = -3637.904664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -49.88705 -43.01073 -40.04822 -39.45939 -35.67320 -34.64197 -34.39076 -32.85264 -31.57587 -31.14885 -28.66630 -27.96393 -24.27332 -23.69291 -23.14262 -21.60919 -21.16921 -19.75491 -18.66021 -18.19097 -17.49040 -17.30816 -17.06755 -16.93982 -16.69871 -16.57663 -15.93205 -15.20082 -15.00435 -14.77138 -14.56272 -14.40018 -14.17234 -13.42482 -13.23047 -13.02326 -12.88084 -12.71588 -12.61203 -12.59200 -12.00581 -11.97918 -11.80627 -10.96814 -10.95023 -10.74993 -9.98239 -9.92929 -9.60195 -9.41338 -8.39183 -6.96402 0.17155 0.28090 0.79600 1.41297 1.41920 1.59602 1.75024 1.88248 2.19602 2.42731 2.53345 2.73887 3.24338 3.49930 3.57438 3.75977 3.84268 3.95086 4.15227 4.30855 4.39763 4.52873 4.69114 4.83641 4.98552 5.14251 5.18618 5.26275 5.33902 5.41642 5.55001 5.65937 5.97655 6.03487 6.18163 6.36396 6.75372 6.91893 7.54106 8.32111 8.56194 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.003342 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.959972 B = 8375.699836 C = 8766.346605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.029 3.971 3 Si 1.007 2.993 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.243 1.243 7 C -0.559 4.559 8 H 0.099 0.901 9 C 0.525 3.475 10 O -0.581 6.581 11 N -0.642 5.642 12 C 0.438 3.562 13 N -0.353 5.353 14 N -0.482 5.482 15 H 0.451 0.549 16 C 0.304 3.696 17 C 0.008 3.992 18 C -0.059 4.059 19 C -0.104 4.104 20 C -0.093 4.093 21 C -0.157 4.157 22 C 0.067 3.933 23 F -0.153 7.153 24 C -0.155 4.155 25 N -0.567 5.567 26 H 0.279 0.721 27 H 0.417 0.583 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.954 -20.462 -3.831 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.188 4.188 3 Si 0.826 3.174 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.166 1.166 7 C -0.595 4.595 8 H 0.117 0.883 9 C 0.331 3.669 10 O -0.461 6.461 11 N -0.297 5.297 12 C 0.069 3.931 13 N -0.191 5.191 14 N -0.204 5.204 15 H 0.299 0.701 16 C 0.025 3.975 17 C -0.031 4.031 18 C -0.060 4.060 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.176 4.176 22 C 0.048 3.952 23 F -0.132 7.132 24 C -0.174 4.174 25 N -0.303 5.303 26 H 0.089 0.911 27 H 0.254 0.746 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.166 0.834 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.783 -19.702 -3.787 21.178 hybrid contribution -0.291 0.441 -0.498 0.726 sum 6.492 -19.261 -4.286 20.773 Atomic orbital electron populations 1.70167 1.09757 1.29517 1.34903 1.27078 0.95565 1.05113 0.90994 0.84862 0.78971 0.74353 0.79241 1.18776 1.19639 1.16632 1.21305 0.95674 0.88852 1.53681 0.88301 1.18994 0.87452 0.83004 0.77480 1.90687 1.15241 1.85549 1.54670 1.43254 1.10092 1.01354 1.75020 1.21039 0.87648 0.87998 0.96397 1.78985 1.14629 0.92512 1.32951 1.47959 1.09959 1.04358 1.58092 0.70076 1.24699 0.81313 0.97499 0.94008 1.19414 1.03017 0.82039 0.98639 1.19390 0.94606 0.98821 0.93177 1.21452 0.92593 0.97479 1.00689 1.21355 1.01730 0.97016 0.90930 1.21448 0.92705 1.03078 1.00347 1.17964 0.92718 1.04407 0.80122 1.91463 1.86388 1.93135 1.42246 1.21207 1.01078 1.03315 0.91777 1.70110 1.33444 0.96810 1.29895 0.91137 0.74552 0.84218 0.84630 0.83425 0.82292 0.83405 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.74 11.85 21.85 0.26 -49.48 16 2 C 0.03 1.58 5.50 85.33 0.47 2.05 16 3 Si 1.01 40.21 29.56 68.60 2.03 42.24 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.24 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.56 -31.59 9.53 24.77 0.24 -31.36 16 8 H 0.10 4.90 7.86 -2.91 -0.02 4.88 16 9 C 0.53 31.65 7.70 86.29 0.66 32.32 16 10 O -0.58 -40.06 13.72 -4.53 -0.06 -40.12 16 11 N -0.64 -32.21 5.41 -317.13 -1.72 -33.93 16 12 C 0.44 20.83 8.81 260.93 2.30 23.13 16 13 N -0.35 -17.26 10.97 -59.06 -0.65 -17.90 16 14 N -0.48 -15.66 7.44 -50.69 -0.38 -16.04 16 15 H 0.45 10.43 8.96 -213.09 -1.91 8.52 16 16 C 0.30 8.59 7.49 138.21 1.04 9.63 16 17 C 0.01 0.12 5.97 29.10 0.17 0.29 16 18 C -0.06 -1.06 5.09 -19.87 -0.10 -1.16 16 19 C -0.10 -1.76 9.70 22.27 0.22 -1.54 16 20 C -0.09 -1.45 10.04 22.26 0.22 -1.23 16 21 C -0.16 -2.84 10.03 22.31 0.22 -2.61 16 22 C 0.07 1.46 7.30 22.37 0.16 1.62 16 23 F -0.15 -3.72 17.27 44.97 0.78 -2.94 16 24 C -0.15 -3.08 9.68 22.31 0.22 -2.86 16 25 N -0.57 -21.08 11.17 -189.09 -2.11 -23.19 16 26 H 0.28 15.31 8.29 -92.71 -0.77 14.55 16 27 H 0.42 17.85 8.80 -92.71 -0.82 17.03 16 28 H 0.14 1.40 8.09 -2.39 -0.02 1.38 16 29 H 0.14 1.02 8.08 -2.39 -0.02 1.00 16 30 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -87.39 307.85 2.44 -84.95 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -1.53 Total: 28.13 kcal Atomic # 6 Polarization: 22.46 SS G_CDS: 5.82 Total: 28.28 kcal Atomic # 7 Polarization: -135.94 SS G_CDS: -4.60 Total: -140.54 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.06 Total: -40.12 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.78 Total: -2.94 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -87.39 2.44 -84.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162748674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.397 kcal (2) G-P(sol) polarization free energy of solvation -87.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds