Wall clock time and date at job start Tue Mar 31 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86806 * 119.99783 * 2 1 4 4 H 1.48500 * 109.47252 * 240.00051 * 3 2 1 5 5 H 1.48497 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47030 * 119.99700 * 3 2 1 7 7 C 1.39918 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00418 * 194.87353 * 7 2 1 9 9 C 1.41320 * 119.99971 * 14.86780 * 7 2 1 10 10 C 1.40831 * 120.22556 * 28.75786 * 9 7 2 11 11 C 1.37553 * 119.91845 * 180.02562 * 10 9 7 12 12 C 1.38651 * 120.38798 * 0.02562 * 11 10 9 13 13 C 1.39089 * 120.46190 * 0.02562 * 12 11 10 14 14 N 1.39852 * 119.96380 * 179.97438 * 13 12 11 15 15 C 1.40303 * 119.99820 * 4.01211 * 14 13 12 16 16 C 1.38624 * 120.83762 * 260.19309 * 15 14 13 17 17 N 1.32592 * 119.17939 * 179.77228 * 16 15 14 18 18 C 1.32208 * 121.00082 * 0.50432 * 17 16 15 19 19 O 1.35553 * 119.08080 * 179.75502 * 18 17 16 20 20 N 1.32303 * 121.83851 * 359.47976 * 18 17 16 21 21 C 1.32846 * 120.70417 * 0.25711 * 20 18 17 22 22 N 1.38770 * 120.52152 * 180.02562 * 21 20 18 23 23 C 1.38667 * 120.07489 * 0.25225 * 13 12 11 24 24 F 1.35103 * 120.19495 * 179.72392 * 23 13 12 25 25 H 0.96999 * 120.00343 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.04119 * 0.04527 * 10 9 7 27 27 H 1.07992 * 119.80787 * 179.97438 * 11 10 9 28 28 H 1.07994 * 119.77003 * 180.02562 * 12 11 10 29 29 H 0.97001 * 120.00802 * 184.01596 * 14 13 12 30 30 H 1.08001 * 120.40557 * 0.02562 * 16 15 14 31 31 H 0.96699 * 114.00712 * 269.72757 * 19 18 17 32 32 H 0.96995 * 120.00801 * 0.02562 * 22 21 20 33 33 H 0.97005 * 119.99424 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6966 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0082 -1.2117 -0.0005 8 1 3.0610 -1.2275 0.2395 9 6 1.3371 -2.4150 -0.3151 10 6 0.2222 -2.4009 -1.1753 11 6 -0.4266 -3.5758 -1.4769 12 6 0.0102 -4.7764 -0.9381 13 6 1.1089 -4.8086 -0.0859 14 7 1.5403 -6.0253 0.4520 15 6 0.9183 -7.2225 0.0666 16 6 -0.0407 -7.8164 0.8723 17 7 -0.6108 -8.9452 0.4738 18 6 -0.2706 -9.5129 -0.6707 19 8 -0.8748 -10.6694 -1.0378 20 7 0.6393 -8.9808 -1.4703 21 6 1.2513 -7.8481 -1.1426 22 7 2.2047 -7.2931 -1.9844 23 6 1.7737 -3.6349 0.2355 24 9 2.8378 -3.6626 1.0674 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1229 -1.4689 -1.5980 27 1 -1.2816 -3.5629 -2.1364 28 1 -0.5064 -5.6929 -1.1819 29 1 2.2694 -6.0417 1.0916 30 1 -0.3230 -7.3630 1.8110 31 1 -0.4189 -11.4656 -0.7325 32 1 2.4288 -7.7322 -2.8197 33 1 2.6471 -6.4659 -1.7373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162784940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:11 Heat of formation + Delta-G solvation = -5.790229 kcal Electronic energy + Delta-G solvation = -22226.156831 eV Core-core repulsion = 18587.634706 eV Total energy + Delta-G solvation = -3638.522125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.26922 -41.05014 -38.19965 -37.23068 -35.38653 -35.03511 -33.37196 -31.93042 -29.69417 -29.51766 -27.00977 -25.40683 -23.88657 -23.28152 -20.95188 -20.84109 -19.24407 -18.44037 -17.68728 -16.96948 -16.76418 -16.05913 -15.66475 -15.44050 -15.35734 -15.08095 -14.23151 -14.09045 -13.82916 -13.57073 -13.25084 -12.86627 -12.10893 -11.92694 -11.72993 -11.71497 -11.50550 -11.43130 -11.20988 -11.08681 -10.65587 -10.06813 -9.91480 -9.70815 -9.67106 -9.27571 -8.80798 -8.17521 -7.49039 -6.90496 -6.57310 -4.52484 0.93332 1.39161 2.61713 2.80049 2.97291 3.01419 3.04152 3.11978 3.59032 3.71468 3.85787 3.94548 4.47710 4.49715 4.94169 5.26487 5.42058 5.70426 5.76276 6.00926 6.17621 6.50400 6.56888 6.77135 6.82776 7.04701 7.07343 7.18143 7.35744 7.45550 7.58951 7.70104 7.86994 7.94654 8.15085 8.21702 8.25506 8.48414 8.67842 8.78499 10.06840 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.035678 B = 0.003872 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.615082 B = 7230.472815 C = 7414.094249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.117 3.883 10 C -0.169 4.169 11 C -0.080 4.080 12 C -0.266 4.266 13 C 0.190 3.810 14 N -0.699 5.699 15 C 0.000 4.000 16 C 0.185 3.815 17 N -0.561 5.561 18 C 0.522 3.478 19 O -0.461 6.461 20 N -0.587 5.587 21 C 0.458 3.542 22 N -0.821 5.821 23 C -0.083 4.083 24 F -0.164 7.164 25 H 0.284 0.716 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.403 0.597 30 H 0.172 0.828 31 H 0.407 0.593 32 H 0.405 0.595 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 -10.902 -1.101 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.113 3.887 10 C -0.190 4.190 11 C -0.099 4.099 12 C -0.289 4.289 13 C 0.093 3.907 14 N -0.333 5.333 15 C -0.104 4.104 16 C 0.023 3.977 17 N -0.291 5.291 18 C 0.216 3.784 19 O -0.263 6.263 20 N -0.325 5.325 21 C 0.209 3.791 22 N -0.364 5.364 23 C -0.107 4.107 24 F -0.144 7.144 25 H 0.095 0.905 26 H 0.139 0.861 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.240 0.760 30 H 0.189 0.811 31 H 0.265 0.735 32 H 0.234 0.766 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.648 -11.350 -1.670 11.590 hybrid contribution 1.549 1.264 0.535 2.070 sum 3.197 -10.085 -1.135 10.641 Atomic orbital electron populations 1.69810 1.07556 1.29681 1.34229 1.25895 0.94791 1.01373 0.92086 0.86281 0.80081 0.79805 0.80125 1.18695 1.20207 1.18867 1.19453 0.97360 0.90593 1.40997 0.90018 1.17399 0.91759 0.90394 0.89104 1.21035 0.99356 0.96897 1.01682 1.20493 0.98167 0.92545 0.98693 1.19708 1.01881 0.97286 1.10071 1.17439 0.94765 0.82729 0.95748 1.41439 1.40168 1.00529 1.51150 1.18408 1.02727 0.92644 0.96664 1.23207 0.87288 0.88470 0.98719 1.67977 1.30422 1.13600 1.17088 1.19796 0.85693 0.88428 0.84452 1.84724 1.50795 1.13280 1.77541 1.67261 1.14321 1.13982 1.36924 1.18754 0.85999 0.86452 0.87921 1.42252 1.41897 1.29110 1.23146 1.17281 0.94759 0.93558 1.05111 1.91228 1.54982 1.97207 1.70961 0.90538 0.86147 0.88813 0.89259 0.75979 0.81123 0.73464 0.76567 0.74742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.56 11.07 55.55 0.62 -18.94 16 2 C 0.08 1.87 5.17 -17.34 -0.09 1.78 16 3 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.69 8.74 -37.78 -0.33 -12.02 16 8 H 0.08 2.07 7.79 -52.49 -0.41 1.66 16 9 C 0.12 2.98 5.53 -106.78 -0.59 2.39 16 10 C -0.17 -4.14 8.65 -38.85 -0.34 -4.47 16 11 C -0.08 -1.77 10.01 -39.68 -0.40 -2.16 16 12 C -0.27 -5.62 9.30 -39.11 -0.36 -5.98 16 13 C 0.19 3.89 6.32 -83.72 -0.53 3.36 16 14 N -0.70 -11.53 4.79 -8.03 -0.04 -11.57 16 15 C 0.00 0.00 4.48 -83.12 -0.37 -0.38 16 16 C 0.19 2.74 11.23 -17.08 -0.19 2.55 16 17 N -0.56 -8.58 10.45 -14.67 -0.15 -8.73 16 18 C 0.52 7.79 8.71 -91.36 -0.80 6.99 16 19 O -0.46 -5.66 13.64 -18.35 -0.25 -5.91 16 20 N -0.59 -8.94 10.49 -13.79 -0.14 -9.09 16 21 C 0.46 6.86 7.66 -154.48 -1.18 5.67 16 22 N -0.82 -10.43 9.06 31.36 0.28 -10.15 16 23 C -0.08 -1.94 7.32 -38.46 -0.28 -2.23 16 24 F -0.16 -3.77 16.13 2.25 0.04 -3.73 16 25 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 26 H 0.12 3.03 6.37 -52.49 -0.33 2.70 16 27 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 28 H 0.09 1.85 6.84 -52.49 -0.36 1.49 16 29 H 0.40 6.20 8.31 -40.82 -0.34 5.86 16 30 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.41 2.63 9.06 45.56 0.41 3.04 16 32 H 0.40 4.28 8.95 -40.82 -0.37 3.92 16 33 H 0.42 5.53 7.92 -40.82 -0.32 5.20 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -29.00 299.34 -7.33 -36.33 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -1.70 Total: 18.75 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -5.46 Total: -4.49 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.56 Total: -58.48 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.25 Total: -5.91 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.00 -7.33 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162784940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.541 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds