Wall clock time and date at job start Tue Mar 31 2020 06:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86806 * 119.99783 * 2 1 4 4 H 1.48500 * 109.47252 * 240.00051 * 3 2 1 5 5 H 1.48497 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47030 * 119.99700 * 3 2 1 7 7 C 1.39918 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00418 * 194.87353 * 7 2 1 9 9 C 1.41320 * 119.99971 * 14.86780 * 7 2 1 10 10 C 1.40831 * 120.22556 * 28.75786 * 9 7 2 11 11 C 1.37553 * 119.91845 * 180.02562 * 10 9 7 12 12 C 1.38651 * 120.38798 * 0.02562 * 11 10 9 13 13 C 1.39089 * 120.46190 * 0.02562 * 12 11 10 14 14 N 1.39852 * 119.96380 * 179.97438 * 13 12 11 15 15 C 1.40303 * 119.99820 * 4.01211 * 14 13 12 16 16 C 1.38624 * 120.83762 * 260.19309 * 15 14 13 17 17 N 1.32592 * 119.17939 * 179.77228 * 16 15 14 18 18 C 1.32208 * 121.00082 * 0.50432 * 17 16 15 19 19 O 1.35553 * 119.08080 * 179.75502 * 18 17 16 20 20 N 1.32303 * 121.83851 * 359.47976 * 18 17 16 21 21 C 1.32846 * 120.70417 * 0.25711 * 20 18 17 22 22 N 1.38770 * 120.52152 * 180.02562 * 21 20 18 23 23 C 1.38667 * 120.07489 * 0.25225 * 13 12 11 24 24 F 1.35103 * 120.19495 * 179.72392 * 23 13 12 25 25 H 0.96999 * 120.00343 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.04119 * 0.04527 * 10 9 7 27 27 H 1.07992 * 119.80787 * 179.97438 * 11 10 9 28 28 H 1.07994 * 119.77003 * 180.02562 * 12 11 10 29 29 H 0.97001 * 120.00802 * 184.01596 * 14 13 12 30 30 H 1.08001 * 120.40557 * 0.02562 * 16 15 14 31 31 H 0.96699 * 114.00712 * 269.72757 * 19 18 17 32 32 H 0.96995 * 120.00801 * 0.02562 * 22 21 20 33 33 H 0.97005 * 119.99424 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6966 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0082 -1.2117 -0.0005 8 1 3.0610 -1.2275 0.2395 9 6 1.3371 -2.4150 -0.3151 10 6 0.2222 -2.4009 -1.1753 11 6 -0.4266 -3.5758 -1.4769 12 6 0.0102 -4.7764 -0.9381 13 6 1.1089 -4.8086 -0.0859 14 7 1.5403 -6.0253 0.4520 15 6 0.9183 -7.2225 0.0666 16 6 -0.0407 -7.8164 0.8723 17 7 -0.6108 -8.9452 0.4738 18 6 -0.2706 -9.5129 -0.6707 19 8 -0.8748 -10.6694 -1.0378 20 7 0.6393 -8.9808 -1.4703 21 6 1.2513 -7.8481 -1.1426 22 7 2.2047 -7.2931 -1.9844 23 6 1.7737 -3.6349 0.2355 24 9 2.8378 -3.6626 1.0674 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1229 -1.4689 -1.5980 27 1 -1.2816 -3.5629 -2.1364 28 1 -0.5064 -5.6929 -1.1819 29 1 2.2694 -6.0417 1.0916 30 1 -0.3230 -7.3630 1.8110 31 1 -0.4189 -11.4656 -0.7325 32 1 2.4288 -7.7322 -2.8197 33 1 2.6471 -6.4659 -1.7373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162784940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:08 Heat of formation + Delta-G solvation = -29.010540 kcal Electronic energy + Delta-G solvation = -22227.163739 eV Core-core repulsion = 18587.634706 eV Total energy + Delta-G solvation = -3639.529033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.07763 -42.20736 -39.65089 -38.53579 -36.76656 -36.27351 -35.05804 -33.10413 -31.48942 -30.93774 -28.48083 -27.23021 -25.06911 -24.49961 -22.70184 -22.50570 -20.28285 -19.64599 -19.33031 -18.43003 -17.96566 -17.76306 -17.06478 -16.74828 -16.72271 -16.50723 -15.96163 -15.80718 -15.07545 -14.95650 -14.71717 -14.47789 -13.71535 -13.46480 -13.25024 -13.06318 -12.90455 -12.80832 -12.77122 -12.59320 -12.21641 -11.85517 -11.46719 -11.46000 -10.98396 -10.87426 -10.10725 -9.33136 -9.31889 -8.68490 -8.19245 -6.42360 -0.21626 0.24540 0.84860 1.05276 1.40010 1.50689 1.53467 1.91490 2.20376 2.37451 2.51751 2.70109 2.77727 3.36740 3.55854 3.82201 3.99425 4.18734 4.39907 4.59418 4.76094 4.91308 5.00047 5.11252 5.24619 5.36485 5.50545 5.70438 5.88091 6.05848 6.11020 6.12824 6.41225 6.49726 6.64229 6.68154 6.82097 6.83221 6.98959 7.12658 8.30154 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.035678 B = 0.003872 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.615082 B = 7230.472815 C = 7414.094249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.041 3.959 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.493 4.493 8 H 0.073 0.927 9 C 0.092 3.908 10 C -0.193 4.193 11 C -0.076 4.076 12 C -0.262 4.262 13 C 0.212 3.788 14 N -0.683 5.683 15 C -0.021 4.021 16 C 0.191 3.809 17 N -0.573 5.573 18 C 0.525 3.475 19 O -0.465 6.465 20 N -0.596 5.596 21 C 0.457 3.543 22 N -0.810 5.810 23 C -0.105 4.105 24 F -0.166 7.166 25 H 0.291 0.709 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.410 0.590 30 H 0.186 0.814 31 H 0.431 0.569 32 H 0.415 0.585 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -11.905 -1.261 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.522 4.522 8 H 0.091 0.909 9 C 0.088 3.912 10 C -0.213 4.213 11 C -0.095 4.095 12 C -0.285 4.285 13 C 0.113 3.887 14 N -0.315 5.315 15 C -0.125 4.125 16 C 0.030 3.970 17 N -0.303 5.303 18 C 0.219 3.781 19 O -0.271 6.271 20 N -0.334 5.334 21 C 0.207 3.793 22 N -0.353 5.353 23 C -0.130 4.130 24 F -0.145 7.145 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.118 0.882 29 H 0.248 0.752 30 H 0.203 0.797 31 H 0.294 0.706 32 H 0.247 0.753 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.648 -12.429 -1.836 12.672 hybrid contribution 1.507 1.324 0.568 2.085 sum 3.155 -11.105 -1.268 11.614 Atomic orbital electron populations 1.69852 1.08803 1.30918 1.34713 1.26676 0.95527 1.04258 0.91100 0.85252 0.78823 0.75640 0.80050 1.18260 1.18927 1.18736 1.19645 0.97295 0.92024 1.43239 0.90886 1.17725 0.92474 0.91317 0.89662 1.20930 1.00274 0.97190 1.02954 1.20730 0.98242 0.92132 0.98365 1.19802 1.01798 0.97199 1.09679 1.17337 0.93548 0.83384 0.94405 1.41272 1.39962 0.99772 1.50513 1.18425 1.04036 0.92466 0.97589 1.23427 0.86527 0.88130 0.98960 1.68071 1.30855 1.13888 1.17519 1.20040 0.84989 0.88934 0.84092 1.84677 1.51119 1.13672 1.77632 1.67359 1.14839 1.14079 1.37136 1.18834 0.86152 0.86468 0.87895 1.42250 1.41024 1.28798 1.23270 1.17414 0.95442 0.94168 1.05933 1.91209 1.55071 1.97241 1.71026 0.89828 0.87683 0.86752 0.88171 0.75195 0.79685 0.70550 0.75296 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.32 11.07 21.82 0.24 -41.08 16 2 C 0.04 1.99 5.17 85.25 0.44 2.43 16 3 Si 0.98 37.22 29.59 68.60 2.03 39.25 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.49 -26.09 8.74 23.44 0.20 -25.88 16 8 H 0.07 3.83 7.79 -2.91 -0.02 3.81 16 9 C 0.09 4.78 5.53 -21.26 -0.12 4.66 16 10 C -0.19 -9.60 8.65 22.74 0.20 -9.40 16 11 C -0.08 -3.30 10.01 22.21 0.22 -3.08 16 12 C -0.26 -10.66 9.30 22.57 0.21 -10.45 16 13 C 0.21 8.49 6.32 38.17 0.24 8.73 16 14 N -0.68 -21.44 4.79 -179.31 -0.86 -22.29 16 15 C -0.02 -0.61 4.48 38.34 0.17 -0.44 16 16 C 0.19 5.25 11.23 84.67 0.95 6.21 16 17 N -0.57 -16.23 10.45 -313.27 -3.27 -19.50 16 18 C 0.53 14.42 8.71 180.61 1.57 15.99 16 19 O -0.46 -10.22 13.64 -88.59 -1.21 -11.43 16 20 N -0.60 -16.78 10.49 -310.44 -3.26 -20.04 16 21 C 0.46 12.71 7.66 133.26 1.02 13.73 16 22 N -0.81 -19.07 9.06 -54.68 -0.50 -19.56 16 23 C -0.11 -4.96 7.32 22.99 0.17 -4.79 16 24 F -0.17 -7.67 16.13 44.97 0.73 -6.94 16 25 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 26 H 0.11 5.47 6.37 -2.91 -0.02 5.45 16 27 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.10 3.90 6.84 -2.91 -0.02 3.88 16 29 H 0.41 11.99 8.31 -92.71 -0.77 11.22 16 30 H 0.19 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.43 4.39 9.06 -74.06 -0.67 3.72 16 32 H 0.42 7.97 8.95 -92.71 -0.83 7.14 16 33 H 0.42 10.35 7.92 -92.70 -0.73 9.61 16 Total: -1.00 -61.86 299.34 -2.58 -64.44 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: -1.76 Total: 39.47 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 5.28 Total: -2.30 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -7.64 Total: -122.48 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.21 Total: -11.43 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.73 Total: -6.94 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -61.86 -2.58 -64.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162784940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.426 kcal (2) G-P(sol) polarization free energy of solvation -61.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds