Wall clock time and date at job start Tue Mar 31 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48510 * 109.46725 * 269.99739 * 3 2 1 5 5 H 1.48502 * 109.47356 * 29.99296 * 3 2 1 6 6 H 1.48494 * 109.47355 * 149.99887 * 3 2 1 7 7 C 1.39922 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00442 * 178.55572 * 7 2 1 9 9 C 1.41411 * 119.99406 * 358.55553 * 7 2 1 10 10 C 1.40753 * 120.19678 * 33.57064 * 9 7 2 11 11 C 1.37893 * 119.87708 * 180.02562 * 10 9 7 12 12 F 1.35100 * 119.86118 * 179.97438 * 11 10 9 13 13 C 1.38733 * 120.27399 * 359.73234 * 11 10 9 14 14 C 1.39287 * 120.39850 * 0.54339 * 13 11 10 15 15 N 1.39654 * 119.94330 * 179.72764 * 14 13 11 16 16 C 1.40308 * 120.00047 * 319.14122 * 15 14 13 17 17 C 1.38618 * 120.83263 * 352.75086 * 16 15 14 18 18 N 1.32600 * 119.17583 * 179.71120 * 17 16 15 19 19 C 1.32205 * 121.00296 * 0.53590 * 18 17 16 20 20 O 1.35551 * 119.08386 * 179.72413 * 19 18 17 21 21 N 1.32302 * 121.83385 * 359.44152 * 19 18 17 22 22 C 1.32842 * 120.70836 * 0.28202 * 21 19 18 23 23 N 1.38763 * 120.52724 * 179.97438 * 22 21 19 24 24 C 1.38371 * 120.11320 * 359.45224 * 14 13 11 25 25 H 0.96996 * 120.00396 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.06430 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.80084 * 180.27517 * 13 11 10 28 28 H 0.96999 * 119.99766 * 139.14469 * 15 14 13 29 29 H 1.08002 * 120.41415 * 359.97410 * 17 16 15 30 30 H 0.96703 * 113.99418 * 269.72863 * 20 19 18 31 31 H 0.96999 * 120.00248 * 359.97438 * 23 22 21 32 32 H 0.97000 * 119.99904 * 179.97438 * 23 22 21 33 33 H 1.07998 * 120.13809 * 180.29445 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4002 5 1 1.4397 2.6528 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2117 0.0005 8 1 3.0877 -1.2119 -0.0230 9 6 1.3012 -2.4361 0.0320 10 6 0.0550 -2.5510 -0.6122 11 6 -0.6287 -3.7479 -0.5770 12 9 -1.8251 -3.8576 -1.1950 13 6 -0.0909 -4.8414 0.0862 14 6 1.1387 -4.7389 0.7324 15 7 1.6686 -5.8440 1.4019 16 6 0.8302 -6.6693 2.1665 17 6 -0.4931 -6.3237 2.3922 18 7 -1.2577 -7.1308 3.1149 19 6 -0.7734 -8.2487 3.6283 20 8 -1.5883 -9.0423 4.3656 21 7 0.4829 -8.6172 3.4379 22 6 1.3095 -7.8641 2.7207 23 7 2.6266 -8.2539 2.5238 24 6 1.8389 -3.5456 0.7072 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3649 -1.7033 -1.1332 27 1 -0.6309 -5.7765 0.1052 28 1 2.6163 -6.0409 1.3384 29 1 -0.8975 -5.4106 1.9810 30 1 -1.5863 -8.8378 5.3108 31 1 2.9505 -9.0820 2.9115 32 1 3.2235 -7.6983 1.9985 33 1 2.7945 -3.4671 1.2041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162796192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:16 Heat of formation + Delta-G solvation = -2.235813 kcal Electronic energy + Delta-G solvation = -21968.950158 eV Core-core repulsion = 18330.582164 eV Total energy + Delta-G solvation = -3638.367994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.75684 -41.01008 -38.43352 -37.27858 -35.38159 -35.17366 -33.28420 -31.87066 -29.86197 -29.43413 -27.40368 -25.68606 -23.80226 -23.20450 -21.14318 -20.96561 -19.10778 -18.73446 -17.75083 -17.14611 -16.39211 -15.98982 -15.84793 -15.32558 -15.18266 -14.93313 -14.59628 -14.43248 -14.12693 -13.94525 -13.29844 -12.99565 -12.31477 -11.86828 -11.73674 -11.67323 -11.56676 -11.43056 -11.27555 -11.14262 -10.68048 -10.30592 -10.25773 -9.97402 -9.46569 -9.22504 -8.95187 -7.89682 -7.59733 -6.91823 -6.64827 -4.69747 1.17107 1.43182 2.45828 2.60984 2.98092 2.99225 3.03047 3.04695 3.38140 3.71604 3.80980 4.02865 4.39883 4.64309 4.87517 5.23059 5.27047 5.58682 5.70606 6.06469 6.29542 6.35207 6.48790 6.68894 6.75752 6.85956 6.99504 7.08847 7.23968 7.44988 7.48178 7.59806 7.72920 7.82890 7.91364 8.05445 8.36403 8.39312 8.62406 8.65052 10.04726 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.004035 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.088279 B = 6938.101258 C = 7456.778380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.198 4.198 11 C 0.124 3.876 12 F -0.161 7.161 13 C -0.301 4.301 14 C 0.193 3.807 15 N -0.669 5.669 16 C 0.053 3.947 17 C 0.120 3.880 18 N -0.522 5.522 19 C 0.465 3.535 20 O -0.460 6.460 21 N -0.559 5.559 22 C 0.405 3.595 23 N -0.842 5.842 24 C -0.243 4.243 25 H 0.283 0.717 26 H 0.140 0.860 27 H 0.108 0.892 28 H 0.400 0.600 29 H 0.187 0.813 30 H 0.401 0.599 31 H 0.407 0.593 32 H 0.407 0.593 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -8.152 4.572 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.147 4.147 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.140 3.860 10 C -0.219 4.219 11 C 0.104 3.896 12 F -0.140 7.140 13 C -0.324 4.324 14 C 0.099 3.901 15 N -0.294 5.294 16 C -0.056 4.056 17 C -0.045 4.045 18 N -0.249 5.249 19 C 0.158 3.842 20 O -0.262 6.262 21 N -0.294 5.294 22 C 0.155 3.845 23 N -0.391 5.391 24 C -0.265 4.265 25 H 0.095 0.905 26 H 0.158 0.842 27 H 0.126 0.874 28 H 0.236 0.764 29 H 0.203 0.797 30 H 0.258 0.742 31 H 0.237 0.763 32 H 0.238 0.762 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.564 -8.771 4.581 10.517 hybrid contribution 1.458 1.116 -0.085 1.838 sum 5.022 -7.656 4.496 10.200 Atomic orbital electron populations 1.69737 1.07436 1.29494 1.35542 1.25952 0.94990 1.01543 0.92196 0.86125 0.80178 0.80037 0.79326 1.19252 1.20068 1.18562 1.19563 0.94784 0.89694 1.44460 0.89956 1.17190 0.90665 0.91541 0.86600 1.21601 0.98727 0.95690 1.05867 1.17445 0.81285 0.95181 0.95687 1.91366 1.44442 1.96940 1.81284 1.20162 1.00974 0.98550 1.12680 1.16970 0.93975 0.85572 0.93536 1.41708 1.08705 1.27642 1.51331 1.19006 0.94515 0.92671 0.99452 1.23068 0.88152 0.98776 0.94526 1.67934 1.38889 1.04654 1.13447 1.19582 0.83452 0.86843 0.94281 1.84751 1.62403 1.55579 1.23456 1.67121 1.05136 1.35028 1.22120 1.17716 0.86778 0.87662 0.92354 1.41920 1.07768 1.28734 1.60671 1.20955 1.03437 0.92472 1.09635 0.90529 0.84216 0.87448 0.76425 0.79679 0.74215 0.76258 0.76235 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.37 10.62 55.55 0.59 -18.78 16 2 C 0.07 1.64 5.40 -17.35 -0.09 1.55 16 3 Si 0.92 17.40 29.56 -169.99 -5.02 12.38 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.46 -10.90 9.05 -37.74 -0.34 -11.25 16 8 H 0.08 1.86 7.85 -52.49 -0.41 1.45 16 9 C 0.14 3.44 5.55 -106.86 -0.59 2.85 16 10 C -0.20 -4.84 8.63 -38.76 -0.33 -5.18 16 11 C 0.12 2.84 7.28 -39.52 -0.29 2.55 16 12 F -0.16 -3.66 17.26 2.25 0.04 -3.62 16 13 C -0.30 -6.27 7.39 -39.01 -0.29 -6.56 16 14 C 0.19 3.75 5.93 -83.86 -0.50 3.25 16 15 N -0.67 -10.34 5.48 -8.10 -0.04 -10.38 16 16 C 0.05 0.84 6.49 -83.12 -0.54 0.30 16 17 C 0.12 2.13 9.28 -17.08 -0.16 1.97 16 18 N -0.52 -9.28 10.45 -14.67 -0.15 -9.43 16 19 C 0.47 7.63 8.71 -91.36 -0.80 6.83 16 20 O -0.46 -6.36 13.64 -18.35 -0.25 -6.61 16 21 N -0.56 -8.71 10.49 -13.79 -0.14 -8.86 16 22 C 0.41 5.79 7.84 -154.49 -1.21 4.58 16 23 N -0.84 -8.25 9.06 31.36 0.28 -7.96 16 24 C -0.24 -5.12 9.71 -38.65 -0.38 -5.50 16 25 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 26 H 0.14 3.61 6.14 -52.49 -0.32 3.29 16 27 H 0.11 2.16 6.55 -52.49 -0.34 1.82 16 28 H 0.40 4.93 7.19 -40.82 -0.29 4.64 16 29 H 0.19 3.51 5.41 -52.49 -0.28 3.22 16 30 H 0.40 3.33 9.06 45.56 0.41 3.74 16 31 H 0.41 3.30 8.95 -40.82 -0.37 2.93 16 32 H 0.41 3.13 7.16 -40.82 -0.29 2.84 16 33 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -28.56 293.80 -7.25 -35.81 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -1.46 Total: 17.63 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -5.52 Total: -4.60 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.53 Total: -55.42 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.25 Total: -6.61 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.02 Total: 12.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.56 -7.25 -35.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162796192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.573 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds