Wall clock time and date at job start Tue Mar 31 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48510 * 109.46725 * 269.99739 * 3 2 1 5 5 H 1.48502 * 109.47356 * 29.99296 * 3 2 1 6 6 H 1.48494 * 109.47355 * 149.99887 * 3 2 1 7 7 C 1.39922 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00442 * 178.55572 * 7 2 1 9 9 C 1.41411 * 119.99406 * 358.55553 * 7 2 1 10 10 C 1.40753 * 120.19678 * 33.57064 * 9 7 2 11 11 C 1.37893 * 119.87708 * 180.02562 * 10 9 7 12 12 F 1.35100 * 119.86118 * 179.97438 * 11 10 9 13 13 C 1.38733 * 120.27399 * 359.73234 * 11 10 9 14 14 C 1.39287 * 120.39850 * 0.54339 * 13 11 10 15 15 N 1.39654 * 119.94330 * 179.72764 * 14 13 11 16 16 C 1.40308 * 120.00047 * 319.14122 * 15 14 13 17 17 C 1.38618 * 120.83263 * 352.75086 * 16 15 14 18 18 N 1.32600 * 119.17583 * 179.71120 * 17 16 15 19 19 C 1.32205 * 121.00296 * 0.53590 * 18 17 16 20 20 O 1.35551 * 119.08386 * 179.72413 * 19 18 17 21 21 N 1.32302 * 121.83385 * 359.44152 * 19 18 17 22 22 C 1.32842 * 120.70836 * 0.28202 * 21 19 18 23 23 N 1.38763 * 120.52724 * 179.97438 * 22 21 19 24 24 C 1.38371 * 120.11320 * 359.45224 * 14 13 11 25 25 H 0.96996 * 120.00396 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.06430 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.80084 * 180.27517 * 13 11 10 28 28 H 0.96999 * 119.99766 * 139.14469 * 15 14 13 29 29 H 1.08002 * 120.41415 * 359.97410 * 17 16 15 30 30 H 0.96703 * 113.99418 * 269.72863 * 20 19 18 31 31 H 0.96999 * 120.00248 * 359.97438 * 23 22 21 32 32 H 0.97000 * 119.99904 * 179.97438 * 23 22 21 33 33 H 1.07998 * 120.13809 * 180.29445 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4002 5 1 1.4397 2.6528 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2117 0.0005 8 1 3.0877 -1.2119 -0.0230 9 6 1.3012 -2.4361 0.0320 10 6 0.0550 -2.5510 -0.6122 11 6 -0.6287 -3.7479 -0.5770 12 9 -1.8251 -3.8576 -1.1950 13 6 -0.0909 -4.8414 0.0862 14 6 1.1387 -4.7389 0.7324 15 7 1.6686 -5.8440 1.4019 16 6 0.8302 -6.6693 2.1665 17 6 -0.4931 -6.3237 2.3922 18 7 -1.2577 -7.1308 3.1149 19 6 -0.7734 -8.2487 3.6283 20 8 -1.5883 -9.0423 4.3656 21 7 0.4829 -8.6172 3.4379 22 6 1.3095 -7.8641 2.7207 23 7 2.6266 -8.2539 2.5238 24 6 1.8389 -3.5456 0.7072 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3649 -1.7033 -1.1332 27 1 -0.6309 -5.7765 0.1052 28 1 2.6163 -6.0409 1.3384 29 1 -0.8975 -5.4106 1.9810 30 1 -1.5863 -8.8378 5.3108 31 1 2.9505 -9.0820 2.9115 32 1 3.2235 -7.6983 1.9985 33 1 2.7945 -3.4671 1.2041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162796192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:16 Heat of formation + Delta-G solvation = -25.475621 kcal Electronic energy + Delta-G solvation = -21969.957912 eV Core-core repulsion = 18330.582164 eV Total energy + Delta-G solvation = -3639.375747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -49.57970 -42.24421 -39.93118 -38.54558 -36.79373 -36.37392 -34.92322 -33.04282 -31.60399 -30.85840 -28.88433 -27.41715 -25.10804 -24.46197 -22.80632 -22.60717 -20.30832 -20.00156 -19.29764 -18.36075 -17.88642 -17.44927 -17.07181 -16.80747 -16.63056 -16.42745 -16.22830 -16.15612 -15.71328 -15.15715 -14.67976 -14.58567 -13.99239 -13.40629 -13.13100 -12.99307 -12.92768 -12.88897 -12.75698 -12.53650 -12.18479 -12.07724 -11.79510 -11.66027 -11.10051 -10.45929 -10.20164 -9.42204 -9.34038 -8.60056 -8.07376 -6.50989 -0.09957 0.21515 0.72816 0.93069 1.43567 1.50474 1.57416 1.97442 2.11049 2.23544 2.55413 2.67605 2.81380 3.37270 3.49228 3.74856 3.81438 4.05440 4.37729 4.53566 4.64990 4.81304 4.99065 5.10967 5.26523 5.30613 5.44658 5.67791 5.71856 5.87461 6.05523 6.13352 6.36068 6.56461 6.59463 6.63715 6.78727 6.85581 6.90511 7.20518 8.34626 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.004035 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.088279 B = 6938.101258 C = 7456.778380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.029 3.971 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.483 4.483 8 H 0.091 0.909 9 C 0.121 3.879 10 C -0.225 4.225 11 C 0.112 3.888 12 F -0.165 7.165 13 C -0.295 4.295 14 C 0.213 3.787 15 N -0.656 5.656 16 C 0.043 3.957 17 C 0.103 3.897 18 N -0.548 5.548 19 C 0.470 3.530 20 O -0.465 6.465 21 N -0.566 5.566 22 C 0.421 3.579 23 N -0.815 5.815 24 C -0.243 4.243 25 H 0.287 0.713 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.418 0.582 29 H 0.166 0.834 30 H 0.424 0.576 31 H 0.420 0.580 32 H 0.420 0.580 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.901 -9.477 5.650 13.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.513 4.513 8 H 0.109 0.891 9 C 0.118 3.882 10 C -0.246 4.246 11 C 0.092 3.908 12 F -0.144 7.144 13 C -0.317 4.317 14 C 0.117 3.883 15 N -0.283 5.283 16 C -0.066 4.066 17 C -0.061 4.061 18 N -0.277 5.277 19 C 0.163 3.837 20 O -0.270 6.270 21 N -0.302 5.302 22 C 0.169 3.831 23 N -0.365 5.365 24 C -0.265 4.265 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.258 0.742 29 H 0.183 0.817 30 H 0.285 0.715 31 H 0.253 0.747 32 H 0.253 0.747 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.730 -10.143 5.680 12.961 hybrid contribution 0.783 1.296 -0.332 1.550 sum 6.513 -8.847 5.348 12.218 Atomic orbital electron populations 1.69843 1.09009 1.30470 1.36632 1.26839 0.95620 1.04783 0.91251 0.85068 0.78947 0.75536 0.79393 1.18807 1.19905 1.17637 1.19888 0.95353 0.90379 1.45653 0.89074 1.17499 0.90765 0.92830 0.87146 1.21472 0.99916 0.95653 1.07571 1.17625 0.81290 0.95579 0.96265 1.91345 1.44647 1.96959 1.81446 1.20261 1.01525 0.98004 1.11925 1.16848 0.92937 0.86243 0.92256 1.41436 1.09520 1.26469 1.50861 1.18914 0.94005 0.93465 1.00193 1.22798 0.89183 0.98614 0.95477 1.67889 1.39544 1.05632 1.14678 1.19788 0.83861 0.86323 0.93777 1.84697 1.62002 1.55035 1.25258 1.67283 1.05000 1.35089 1.22874 1.17849 0.87987 0.86610 0.90696 1.41929 1.06019 1.29117 1.59468 1.21101 1.04214 0.92064 1.09152 0.90219 0.86540 0.86697 0.74246 0.81672 0.71455 0.74695 0.74660 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.96 10.62 21.82 0.23 -41.73 16 2 C 0.03 1.37 5.40 85.25 0.46 1.83 16 3 Si 0.99 35.64 29.56 68.60 2.03 37.67 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 7 C -0.48 -23.42 9.05 23.46 0.21 -23.21 16 8 H 0.09 4.09 7.85 -2.91 -0.02 4.07 16 9 C 0.12 5.90 5.55 -21.31 -0.12 5.78 16 10 C -0.23 -11.47 8.63 22.80 0.20 -11.27 16 11 C 0.11 5.30 7.28 22.31 0.16 5.46 16 12 F -0.16 -7.74 17.26 44.97 0.78 -6.97 16 13 C -0.29 -12.28 7.39 22.64 0.17 -12.11 16 14 C 0.21 8.01 5.93 38.18 0.23 8.24 16 15 N -0.66 -18.66 5.48 -179.54 -0.98 -19.64 16 16 C 0.04 1.29 6.49 38.34 0.25 1.54 16 17 C 0.10 3.59 9.28 84.67 0.79 4.38 16 18 N -0.55 -19.12 10.45 -313.28 -3.28 -22.39 16 19 C 0.47 14.56 8.71 180.61 1.57 16.14 16 20 O -0.46 -11.92 13.64 -88.57 -1.21 -13.13 16 21 N -0.57 -16.13 10.49 -310.46 -3.26 -19.39 16 22 C 0.42 10.74 7.84 133.26 1.05 11.79 16 23 N -0.82 -12.64 9.06 -54.69 -0.50 -13.13 16 24 C -0.24 -10.06 9.71 22.87 0.22 -9.84 16 25 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 26 H 0.12 6.41 6.14 -2.91 -0.02 6.39 16 27 H 0.12 4.60 6.55 -2.91 -0.02 4.58 16 28 H 0.42 8.81 7.19 -92.71 -0.67 8.15 16 29 H 0.17 6.36 5.41 -2.91 -0.02 6.34 16 30 H 0.42 6.11 9.06 -74.05 -0.67 5.44 16 31 H 0.42 4.97 8.95 -92.71 -0.83 4.14 16 32 H 0.42 4.60 7.16 -92.71 -0.66 3.93 16 33 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -62.83 293.80 -2.58 -65.40 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -1.58 Total: 34.58 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.18 Total: -1.29 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -7.78 Total: -116.28 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -1.21 Total: -13.13 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.78 Total: -6.97 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -62.83 -2.58 -65.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162796192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.928 kcal (2) G-P(sol) polarization free energy of solvation -62.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds