Wall clock time and date at job start Tue Mar 31 2020 06:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30932 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48500 * 109.47146 * 270.00567 * 3 2 1 5 5 H 1.48501 * 109.46861 * 30.00306 * 3 2 1 6 6 H 1.48501 * 109.47135 * 150.00300 * 3 2 1 7 7 C 1.39877 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00084 * 197.04108 * 7 2 1 9 9 C 1.40952 * 120.00020 * 17.03237 * 7 2 1 10 10 C 1.41012 * 120.32311 * 40.10433 * 9 7 2 11 11 F 1.35095 * 120.11426 * 359.97438 * 10 9 7 12 12 C 1.37683 * 119.76858 * 180.29827 * 10 9 7 13 13 C 1.38844 * 120.45234 * 359.67864 * 12 10 9 14 14 C 1.38142 * 120.67098 * 0.02662 * 13 12 10 15 15 C 1.38741 * 120.21133 * 0.02562 * 14 13 12 16 16 N 1.38621 * 120.22926 * 179.97438 * 15 14 13 17 17 C 1.40055 * 119.99508 * 356.45221 * 16 15 14 18 18 C 1.38716 * 120.84206 * 256.35842 * 17 16 15 19 19 N 1.32555 * 119.17384 * 179.75844 * 18 17 16 20 20 C 1.32246 * 121.00675 * 0.54735 * 19 18 17 21 21 O 1.35536 * 119.07011 * 179.71664 * 20 19 18 22 22 N 1.32305 * 121.85676 * 359.43374 * 20 19 18 23 23 C 1.32838 * 120.71362 * 0.28827 * 22 20 19 24 24 N 1.38698 * 120.53359 * 180.02562 * 23 22 20 25 25 H 0.96997 * 120.00160 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.77566 * 179.70474 * 12 10 9 27 27 H 1.08002 * 119.66713 * 179.97438 * 13 12 10 28 28 H 1.08001 * 119.89418 * 180.02562 * 14 13 12 29 29 H 0.97002 * 120.00097 * 176.45582 * 16 15 14 30 30 H 1.08003 * 120.41599 * 0.04332 * 18 17 16 31 31 H 0.96694 * 113.99858 * 269.73328 * 21 20 19 32 32 H 0.97003 * 119.99527 * 359.97438 * 24 23 22 33 33 H 0.97000 * 120.00169 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4907 2.0465 -1.4001 5 1 1.4407 2.6526 0.7001 6 1 3.5409 1.4401 0.7000 7 6 2.0087 -1.2113 -0.0005 8 1 3.0531 -1.2320 0.2735 9 6 1.3504 -2.4051 -0.3586 10 6 0.4282 -2.4172 -1.4253 11 9 0.1698 -1.2821 -2.1108 12 6 -0.2130 -3.5883 -1.7614 13 6 0.0472 -4.7589 -1.0616 14 6 0.9517 -4.7694 -0.0175 15 6 1.6127 -3.6048 0.3454 16 7 2.5199 -3.6149 1.3934 17 6 2.7171 -4.7848 2.1376 18 6 2.1678 -4.9232 3.4039 19 7 2.3713 -6.0467 4.0773 20 6 3.0960 -7.0267 3.5642 21 8 3.2837 -8.1562 4.2894 22 7 3.6383 -6.9378 2.3607 23 6 3.4753 -5.8459 1.6220 24 7 4.0451 -5.7570 0.3606 25 1 -0.4850 0.8400 -0.0004 26 1 -0.9229 -3.5966 -2.5752 27 1 -0.4633 -5.6703 -1.3357 28 1 1.1448 -5.6872 0.5181 29 1 3.0182 -2.8116 1.6113 30 1 1.5778 -4.1273 3.8339 31 1 4.0679 -8.1349 4.8546 32 1 4.5680 -6.4957 0.0114 33 1 3.9208 -4.9561 -0.1724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162796488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:56 Heat of formation + Delta-G solvation = -22.017475 kcal Electronic energy + Delta-G solvation = -22599.356601 eV Core-core repulsion = 18960.130810 eV Total energy + Delta-G solvation = -3639.225791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.90267 -42.17349 -39.81784 -38.42785 -36.35714 -35.90254 -35.36630 -33.07004 -31.71726 -30.54080 -28.75040 -26.93005 -25.04189 -24.43691 -22.89458 -22.14435 -20.23464 -19.53750 -19.21566 -18.37511 -18.19423 -17.68615 -16.85066 -16.67177 -16.48163 -15.97646 -15.90168 -15.74106 -15.63008 -14.86572 -14.55491 -14.48613 -13.58482 -13.40385 -13.15484 -13.06445 -12.98977 -12.76494 -12.70466 -12.57018 -12.28083 -11.91042 -11.40142 -11.28915 -10.89340 -10.79394 -10.07124 -9.25390 -9.05535 -8.58038 -8.21869 -6.19734 -0.15457 0.29355 0.91487 0.99001 1.43142 1.50071 1.53299 1.96472 2.27484 2.56874 2.58760 2.81348 2.88293 3.42207 3.50242 3.89915 4.21610 4.25714 4.35928 4.61952 4.66059 4.69598 5.05065 5.16885 5.35209 5.45278 5.51910 5.71065 5.77019 5.97623 6.16871 6.19786 6.46095 6.54385 6.67525 6.75495 6.94824 7.09784 7.10665 7.18250 8.49335 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.005122 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.355855 B = 5465.399638 C = 6176.879297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.040 3.960 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.499 4.499 8 H 0.088 0.912 9 C 0.022 3.978 10 C 0.034 3.966 11 F -0.159 7.159 12 C -0.188 4.188 13 C -0.148 4.148 14 C -0.177 4.177 15 C 0.151 3.849 16 N -0.669 5.669 17 C -0.017 4.017 18 C 0.184 3.816 19 N -0.573 5.573 20 C 0.520 3.480 21 O -0.465 6.465 22 N -0.594 5.594 23 C 0.455 3.545 24 N -0.809 5.809 25 H 0.280 0.720 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.410 0.590 30 H 0.181 0.819 31 H 0.430 0.570 32 H 0.415 0.585 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -7.791 4.045 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.174 4.174 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.173 1.173 7 C -0.530 4.530 8 H 0.106 0.894 9 C 0.017 3.983 10 C 0.012 3.988 11 F -0.138 7.138 12 C -0.208 4.208 13 C -0.168 4.168 14 C -0.200 4.200 15 C 0.052 3.948 16 N -0.301 5.301 17 C -0.122 4.122 18 C 0.022 3.978 19 N -0.303 5.303 20 C 0.214 3.786 21 O -0.271 6.271 22 N -0.333 5.333 23 C 0.204 3.796 24 N -0.353 5.353 25 H 0.090 0.910 26 H 0.130 0.870 27 H 0.144 0.856 28 H 0.118 0.882 29 H 0.249 0.751 30 H 0.198 0.802 31 H 0.293 0.707 32 H 0.246 0.754 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.602 -8.824 4.415 12.456 hybrid contribution 0.406 2.186 -0.763 2.351 sum 8.008 -6.638 3.652 11.024 Atomic orbital electron populations 1.69859 1.09001 1.29968 1.37093 1.26419 0.95107 1.03777 0.92078 0.85392 0.79468 0.77349 0.78655 1.20180 1.20487 1.17340 1.19128 0.97844 0.91286 1.44706 0.89421 1.17302 0.95838 0.92963 0.92227 1.17996 1.04494 0.81337 0.94948 1.91269 1.93261 1.51131 1.78131 1.20697 1.03702 0.92693 1.03749 1.20335 1.01397 0.96783 0.98242 1.20201 1.02677 0.95655 1.01517 1.17648 0.94329 0.93093 0.89777 1.40930 1.45271 1.10504 1.33375 1.18520 1.06439 0.91564 0.95655 1.23395 0.91047 0.93201 0.90162 1.68042 1.21748 1.01758 1.38796 1.20020 0.88205 0.85056 0.85278 1.84668 1.52141 1.30931 1.59361 1.67343 1.30858 1.25875 1.09197 1.18846 0.86148 0.87639 0.86971 1.42242 1.55889 1.23377 1.13765 0.91015 0.86988 0.85560 0.88189 0.75053 0.80202 0.70707 0.75352 0.74763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.10 11.24 21.82 0.25 -43.85 16 2 C 0.04 1.98 4.59 85.22 0.39 2.37 16 3 Si 0.97 38.00 29.59 68.60 2.03 40.03 16 4 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 7 C -0.50 -23.99 8.05 23.33 0.19 -23.81 16 8 H 0.09 3.86 7.21 -2.91 -0.02 3.84 16 9 C 0.02 1.06 5.37 -21.12 -0.11 0.95 16 10 C 0.03 1.70 6.66 22.82 0.15 1.85 16 11 F -0.16 -8.62 14.50 44.97 0.65 -7.96 16 12 C -0.19 -8.28 9.99 22.28 0.22 -8.06 16 13 C -0.15 -5.82 10.03 22.39 0.22 -5.60 16 14 C -0.18 -6.91 9.15 22.37 0.20 -6.70 16 15 C 0.15 6.14 6.08 39.01 0.24 6.38 16 16 N -0.67 -22.62 4.75 -178.34 -0.85 -23.46 16 17 C -0.02 -0.53 4.79 38.43 0.18 -0.34 16 18 C 0.18 5.44 11.24 84.70 0.95 6.39 16 19 N -0.57 -17.12 10.45 -313.20 -3.27 -20.39 16 20 C 0.52 14.80 8.71 180.59 1.57 16.37 16 21 O -0.46 -10.61 13.64 -88.40 -1.21 -11.82 16 22 N -0.59 -17.10 10.49 -310.43 -3.26 -20.36 16 23 C 0.45 12.95 6.92 133.31 0.92 13.87 16 24 N -0.81 -19.21 9.05 -54.68 -0.50 -19.70 16 25 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 26 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 28 H 0.10 3.71 6.41 -2.91 -0.02 3.70 16 29 H 0.41 13.74 7.31 -92.71 -0.68 13.06 16 30 H 0.18 4.88 8.06 -2.91 -0.02 4.85 16 31 H 0.43 4.82 9.06 -74.06 -0.67 4.14 16 32 H 0.41 7.95 8.95 -92.71 -0.83 7.12 16 33 H 0.42 10.53 7.70 -92.71 -0.71 9.82 16 Total: -1.00 -61.61 295.73 -2.66 -64.27 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -1.65 Total: 39.58 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.14 Total: 3.67 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -7.63 Total: -127.77 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.21 Total: -11.82 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 0.65 Total: -7.96 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -61.61 -2.66 -64.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162796488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.253 kcal (2) G-P(sol) polarization free energy of solvation -61.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds