Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86791 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47320 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47226 * 119.99992 * 3 2 1 6 6 H 1.48501 * 109.47122 * 239.99681 * 3 2 1 7 7 C 1.39927 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99632 * 154.65224 * 7 2 1 9 9 C 1.41037 * 120.00401 * 334.65174 * 7 2 1 10 10 C 1.40729 * 120.30486 * 334.27624 * 9 7 2 11 11 C 1.36458 * 119.94681 * 179.74253 * 10 9 7 12 12 C 1.38888 * 120.60051 * 0.56105 * 11 10 9 13 13 C 1.50697 * 119.68969 * 179.71609 * 12 11 10 14 14 F 1.39899 * 109.47114 * 269.97945 * 13 12 11 15 15 F 1.39899 * 109.47158 * 29.97874 * 13 12 11 16 16 F 1.39901 * 109.47326 * 149.98395 * 13 12 11 17 17 C 1.38169 * 120.62524 * 359.69476 * 12 11 10 18 18 C 1.38745 * 120.02500 * 0.02562 * 17 12 11 19 19 N 1.38735 * 120.29260 * 179.97438 * 18 17 12 20 20 O 1.41601 * 120.00368 * 0.02562 * 19 18 17 21 21 C 1.42896 * 114.00265 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47033 * 179.97438 * 21 20 19 23 23 N 1.46896 * 109.46878 * 65.00330 * 22 21 20 24 24 H 0.96999 * 120.00899 * 174.18481 * 1 2 3 25 25 H 1.07997 * 120.02545 * 0.02562 * 10 9 7 26 26 H 1.08005 * 119.69747 * 180.28068 * 11 10 9 27 27 H 1.08001 * 119.98536 * 180.02562 * 17 12 11 28 28 H 0.97001 * 120.00152 * 180.02562 * 19 18 17 29 29 H 1.08998 * 109.47018 * 300.00080 * 21 20 19 30 30 H 1.09001 * 109.47225 * 60.00388 * 21 20 19 31 31 H 1.08996 * 109.47008 * 185.00144 * 22 21 20 32 32 H 1.09004 * 109.47168 * 305.00311 * 22 21 20 33 33 H 1.00898 * 111.00796 * 56.04500 * 23 22 21 34 34 H 1.00901 * 110.99891 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0965 1.6963 1.2125 6 1 3.0966 1.6962 -1.2125 7 6 2.0083 -1.2119 0.0005 8 1 3.0103 -1.2571 -0.3999 9 6 1.4049 -2.3743 0.5240 10 6 0.3944 -2.2727 1.4981 11 6 -0.1881 -3.4019 1.9957 12 6 0.2148 -4.6569 1.5581 13 6 -0.4380 -5.8906 2.1262 14 9 0.2691 -6.3139 3.2567 15 9 -1.7579 -5.5967 2.4847 16 9 -0.4311 -6.9068 1.1646 17 6 1.2084 -4.7851 0.6065 18 6 1.8143 -3.6540 0.0788 19 7 2.8128 -3.7762 -0.8766 20 8 3.2175 -5.0594 -1.3177 21 6 4.2535 -5.0359 -2.3016 22 6 4.6093 -6.4691 -2.7020 23 7 3.4568 -7.0923 -3.3661 24 1 -0.4851 -0.8356 -0.0851 25 1 0.0769 -1.3016 1.8482 26 1 -0.9665 -3.3191 2.7399 27 1 1.5134 -5.7661 0.2733 28 1 3.2338 -2.9825 -1.2424 29 1 3.9092 -4.4880 -3.1787 30 1 5.1350 -4.5448 -1.8893 31 1 5.4585 -6.4554 -3.3850 32 1 4.8686 -7.0415 -1.8112 33 1 3.1563 -6.5447 -4.1585 34 1 3.6668 -8.0402 -3.6409 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164436164.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -132.192211 kcal Electronic energy + Delta-G solvation = -23188.910864 eV Core-core repulsion = 19094.218352 eV Total energy + Delta-G solvation = -4094.692512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -49.28382 -46.82012 -46.75872 -38.37780 -37.18971 -34.62654 -34.18684 -32.15205 -29.93927 -28.14168 -26.81312 -26.52410 -23.64668 -22.13052 -21.05657 -20.61807 -18.07425 -17.70389 -17.62917 -17.52719 -17.07947 -16.30975 -15.19196 -14.91735 -14.65544 -14.36187 -14.08977 -13.84956 -13.68806 -13.41655 -13.26479 -13.16652 -13.00722 -12.97844 -12.78976 -12.47613 -12.30892 -11.90274 -11.69136 -11.34289 -11.22128 -10.73443 -10.62408 -10.49824 -10.06178 -9.69944 -9.19986 -8.96955 -8.79428 -7.88150 -7.43435 -6.57047 -4.51148 2.37219 2.84200 2.88133 3.04870 3.11829 3.26125 3.66832 3.88510 4.33954 4.39911 4.85940 4.96535 4.98330 5.05918 5.13180 5.18287 5.42466 5.52189 5.65415 5.80364 6.15550 6.21318 6.73038 6.77597 6.96896 7.07809 7.22177 7.26560 7.29951 7.56502 7.65771 7.86389 7.93857 8.15854 8.54355 8.68852 8.78046 9.88131 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.007220 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.049268 B = 3877.386485 C = 6476.303007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.040 3.960 3 Si 1.065 2.935 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.083 3.917 10 C -0.206 4.206 11 C -0.067 4.067 12 C -0.285 4.285 13 C 0.516 3.484 14 F -0.195 7.195 15 F -0.193 7.193 16 F -0.191 7.191 17 C -0.102 4.102 18 C 0.125 3.875 19 N -0.619 5.619 20 O -0.148 6.148 21 C 0.041 3.959 22 C 0.070 3.930 23 N -0.843 5.843 24 H 0.303 0.697 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.407 0.593 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.341 0.659 34 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 -5.620 -4.098 9.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.184 4.184 3 Si 0.888 3.112 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.093 0.907 9 C 0.077 3.923 10 C -0.226 4.226 11 C -0.087 4.087 12 C -0.288 4.288 13 C 0.462 3.538 14 F -0.177 7.177 15 F -0.175 7.175 16 F -0.173 7.173 17 C -0.126 4.126 18 C 0.027 3.973 19 N -0.304 5.304 20 O -0.152 6.152 21 C -0.037 4.037 22 C -0.062 4.062 23 N -0.373 5.373 24 H 0.117 0.883 25 H 0.134 0.866 26 H 0.118 0.882 27 H 0.128 0.872 28 H 0.249 0.751 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.502 -4.250 -3.290 7.692 hybrid contribution 1.090 -1.744 -1.173 2.368 sum 6.592 -5.995 -4.463 9.965 Atomic orbital electron populations 1.70459 1.08149 1.34742 1.27258 1.27008 0.95635 1.04203 0.91512 0.83629 0.75705 0.73873 0.78010 1.19661 1.19830 1.20205 1.20313 1.02561 0.94264 1.36934 0.90735 1.17323 0.93054 0.89984 0.91907 1.20490 1.03620 0.97159 1.01351 1.19944 0.98525 0.91361 0.98822 1.18777 1.08608 0.90535 1.10920 1.18528 0.75740 0.84439 0.75079 1.93132 1.78864 1.91604 1.54089 1.93089 1.38503 1.93464 1.92398 1.93102 1.96376 1.63617 1.64194 1.19630 0.97685 0.96992 0.98300 1.17327 0.93449 0.93359 0.93120 1.45130 1.43420 0.94863 1.47035 1.90374 1.55721 1.10437 1.58696 1.22767 0.91417 0.97266 0.92290 1.21718 0.91465 0.93915 0.99068 1.58554 1.37465 1.06426 1.34872 0.88267 0.86593 0.88246 0.87242 0.75075 0.93036 0.92500 0.93806 0.89908 0.84639 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.40 12.32 55.55 0.68 -18.71 16 2 C 0.04 0.93 4.94 -17.33 -0.09 0.84 16 3 Si 1.06 19.80 30.00 -169.99 -5.10 14.70 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.28 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.51 -12.24 8.44 -37.89 -0.32 -12.56 16 8 H 0.07 1.67 6.75 -52.48 -0.35 1.32 16 9 C 0.08 2.05 5.31 -106.64 -0.57 1.48 16 10 C -0.21 -5.00 7.89 -39.28 -0.31 -5.31 16 11 C -0.07 -1.53 9.31 -39.98 -0.37 -1.91 16 12 C -0.29 -6.56 5.47 -104.41 -0.57 -7.13 16 13 C 0.52 10.84 3.36 36.00 0.12 10.96 16 14 F -0.20 -4.01 17.30 2.25 0.04 -3.97 16 15 F -0.19 -3.90 16.43 2.25 0.04 -3.87 16 16 F -0.19 -3.98 16.43 2.25 0.04 -3.94 16 17 C -0.10 -2.41 8.88 -39.42 -0.35 -2.76 16 18 C 0.12 2.96 6.77 -83.29 -0.56 2.40 16 19 N -0.62 -12.91 6.48 32.72 0.21 -12.70 16 20 O -0.15 -2.82 10.38 -11.47 -0.12 -2.94 16 21 C 0.04 0.56 6.51 37.16 0.24 0.80 16 22 C 0.07 0.78 7.17 -3.82 -0.03 0.75 16 23 N -0.84 -9.59 9.57 -10.37 -0.10 -9.69 16 24 H 0.30 7.76 6.69 -40.82 -0.27 7.49 16 25 H 0.12 2.85 6.50 -52.49 -0.34 2.51 16 26 H 0.10 2.10 7.58 -52.48 -0.40 1.70 16 27 H 0.11 2.58 6.94 -52.49 -0.36 2.21 16 28 H 0.41 7.92 6.77 -40.82 -0.28 7.64 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.34 3.50 8.99 -39.29 -0.35 3.15 16 34 H 0.34 3.01 9.08 -39.29 -0.36 2.66 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -27.25 306.15 -5.70 -32.95 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -3.20 Total: 15.99 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.80 Total: -12.42 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.80 Total: -41.10 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: -0.12 Total: -2.94 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 0.11 Total: -11.78 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.10 Total: 14.70 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.25 -5.70 -32.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164436164.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.246 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds