Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86791 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47320 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47226 * 119.99992 * 3 2 1 6 6 H 1.48501 * 109.47122 * 239.99681 * 3 2 1 7 7 C 1.39927 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99632 * 154.65224 * 7 2 1 9 9 C 1.41037 * 120.00401 * 334.65174 * 7 2 1 10 10 C 1.40729 * 120.30486 * 334.27624 * 9 7 2 11 11 C 1.36458 * 119.94681 * 179.74253 * 10 9 7 12 12 C 1.38888 * 120.60051 * 0.56105 * 11 10 9 13 13 C 1.50697 * 119.68969 * 179.71609 * 12 11 10 14 14 F 1.39899 * 109.47114 * 269.97945 * 13 12 11 15 15 F 1.39899 * 109.47158 * 29.97874 * 13 12 11 16 16 F 1.39901 * 109.47326 * 149.98395 * 13 12 11 17 17 C 1.38169 * 120.62524 * 359.69476 * 12 11 10 18 18 C 1.38745 * 120.02500 * 0.02562 * 17 12 11 19 19 N 1.38735 * 120.29260 * 179.97438 * 18 17 12 20 20 O 1.41601 * 120.00368 * 0.02562 * 19 18 17 21 21 C 1.42896 * 114.00265 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47033 * 179.97438 * 21 20 19 23 23 N 1.46896 * 109.46878 * 65.00330 * 22 21 20 24 24 H 0.96999 * 120.00899 * 174.18481 * 1 2 3 25 25 H 1.07997 * 120.02545 * 0.02562 * 10 9 7 26 26 H 1.08005 * 119.69747 * 180.28068 * 11 10 9 27 27 H 1.08001 * 119.98536 * 180.02562 * 17 12 11 28 28 H 0.97001 * 120.00152 * 180.02562 * 19 18 17 29 29 H 1.08998 * 109.47018 * 300.00080 * 21 20 19 30 30 H 1.09001 * 109.47225 * 60.00388 * 21 20 19 31 31 H 1.08996 * 109.47008 * 185.00144 * 22 21 20 32 32 H 1.09004 * 109.47168 * 305.00311 * 22 21 20 33 33 H 1.00898 * 111.00796 * 56.04500 * 23 22 21 34 34 H 1.00901 * 110.99891 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0965 1.6963 1.2125 6 1 3.0966 1.6962 -1.2125 7 6 2.0083 -1.2119 0.0005 8 1 3.0103 -1.2571 -0.3999 9 6 1.4049 -2.3743 0.5240 10 6 0.3944 -2.2727 1.4981 11 6 -0.1881 -3.4019 1.9957 12 6 0.2148 -4.6569 1.5581 13 6 -0.4380 -5.8906 2.1262 14 9 0.2691 -6.3139 3.2567 15 9 -1.7579 -5.5967 2.4847 16 9 -0.4311 -6.9068 1.1646 17 6 1.2084 -4.7851 0.6065 18 6 1.8143 -3.6540 0.0788 19 7 2.8128 -3.7762 -0.8766 20 8 3.2175 -5.0594 -1.3177 21 6 4.2535 -5.0359 -2.3016 22 6 4.6093 -6.4691 -2.7020 23 7 3.4568 -7.0923 -3.3661 24 1 -0.4851 -0.8356 -0.0851 25 1 0.0769 -1.3016 1.8482 26 1 -0.9665 -3.3191 2.7399 27 1 1.5134 -5.7661 0.2733 28 1 3.2338 -2.9825 -1.2424 29 1 3.9092 -4.4880 -3.1787 30 1 5.1350 -4.5448 -1.8893 31 1 5.4585 -6.4554 -3.3850 32 1 4.8686 -7.0415 -1.8112 33 1 3.1563 -6.5447 -4.1585 34 1 3.6668 -8.0402 -3.6409 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164436164.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -148.940910 kcal Electronic energy + Delta-G solvation = -23189.637142 eV Core-core repulsion = 19094.218352 eV Total energy + Delta-G solvation = -4095.418790 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.96784 -48.49449 -48.43609 -40.13287 -38.57095 -36.00970 -35.74265 -33.72875 -31.73798 -29.53353 -28.33658 -28.20838 -25.41628 -23.25447 -22.78796 -22.33443 -19.85679 -19.32842 -19.31149 -19.22857 -18.61443 -17.32611 -16.71110 -16.48815 -16.18885 -15.74644 -15.52975 -15.38231 -15.26947 -15.00636 -14.93749 -14.73299 -14.64909 -14.49964 -14.24269 -14.11081 -13.88714 -13.56197 -13.36856 -12.78797 -12.46971 -12.37305 -12.05467 -11.94713 -11.84341 -11.43710 -10.93941 -10.59175 -9.74620 -9.62214 -9.27663 -8.31780 -6.35469 0.54401 1.02391 1.37699 1.55662 1.63393 1.83388 1.95483 2.34029 2.58079 3.16371 3.33576 3.34595 3.56909 3.77071 3.83626 4.01844 4.14812 4.28810 4.40032 4.45338 4.59476 4.84435 4.91805 4.96691 5.26993 5.39632 5.46563 5.69159 5.80680 6.02335 6.11882 6.18916 6.36008 6.56872 6.75038 6.89001 7.20737 8.01363 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.007220 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.049268 B = 3877.386485 C = 6476.303007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.008 3.992 3 Si 1.115 2.885 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.528 4.528 8 H 0.085 0.915 9 C 0.060 3.940 10 C -0.218 4.218 11 C -0.072 4.072 12 C -0.288 4.288 13 C 0.524 3.476 14 F -0.190 7.190 15 F -0.186 7.186 16 F -0.189 7.189 17 C -0.116 4.116 18 C 0.121 3.879 19 N -0.616 5.616 20 O -0.167 6.167 21 C 0.031 3.969 22 C 0.076 3.924 23 N -0.864 5.864 24 H 0.288 0.712 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.411 0.589 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.346 0.654 34 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -5.669 -4.714 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.210 4.210 3 Si 0.932 3.068 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.556 4.556 8 H 0.103 0.897 9 C 0.054 3.946 10 C -0.239 4.239 11 C -0.092 4.092 12 C -0.291 4.291 13 C 0.470 3.530 14 F -0.172 7.172 15 F -0.168 7.168 16 F -0.170 7.170 17 C -0.141 4.141 18 C 0.022 3.978 19 N -0.301 5.301 20 O -0.172 6.172 21 C -0.047 4.047 22 C -0.056 4.056 23 N -0.397 5.397 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.254 0.746 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.842 -4.334 -3.932 9.004 hybrid contribution 0.720 -1.843 -1.035 2.233 sum 7.562 -6.177 -4.968 10.956 Atomic orbital electron populations 1.70570 1.09037 1.33742 1.29336 1.28366 0.95548 1.07225 0.89888 0.83006 0.74762 0.69832 0.79165 1.20063 1.18901 1.17910 1.20554 1.03057 0.94582 1.37371 0.89702 1.17601 0.93644 0.90849 0.92509 1.20490 1.04297 0.97153 1.01929 1.20100 0.98850 0.91108 0.99145 1.18987 1.08296 0.91351 1.10500 1.18205 0.75845 0.83822 0.75122 1.93140 1.78833 1.91469 1.53737 1.93102 1.37953 1.93424 1.92313 1.93107 1.96379 1.63354 1.64200 1.19701 0.98432 0.96910 0.99065 1.17469 0.93793 0.93138 0.93368 1.45040 1.42571 0.96232 1.46231 1.90361 1.57551 1.09079 1.60234 1.23178 0.90570 0.99541 0.91406 1.21735 0.92430 0.91890 0.99556 1.58539 1.38106 1.07551 1.35460 0.89932 0.87592 0.86608 0.87415 0.74568 0.92328 0.91027 0.90161 0.90585 0.84080 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.32 12.32 21.83 0.27 -40.05 16 2 C 0.01 0.37 4.94 85.24 0.42 0.79 16 3 Si 1.12 38.82 30.00 68.60 2.06 40.88 16 4 H -0.28 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 6 H -0.25 -7.96 7.11 99.48 0.71 -7.25 16 7 C -0.53 -25.18 8.44 23.37 0.20 -24.98 16 8 H 0.09 3.75 6.75 -2.91 -0.02 3.73 16 9 C 0.06 2.97 5.31 -21.17 -0.11 2.86 16 10 C -0.22 -10.77 7.89 22.46 0.18 -10.60 16 11 C -0.07 -3.33 9.31 22.01 0.20 -3.13 16 12 C -0.29 -13.17 5.47 -19.73 -0.11 -13.28 16 13 C 0.52 21.49 3.36 71.24 0.24 21.72 16 14 F -0.19 -7.56 17.30 44.97 0.78 -6.78 16 15 F -0.19 -7.30 16.43 44.97 0.74 -6.56 16 16 F -0.19 -7.66 16.43 44.97 0.74 -6.92 16 17 C -0.12 -5.51 8.88 22.37 0.20 -5.31 16 18 C 0.12 5.77 6.77 38.99 0.26 6.04 16 19 N -0.62 -25.48 6.48 -50.39 -0.33 -25.81 16 20 O -0.17 -6.24 10.38 -38.79 -0.40 -6.65 16 21 C 0.03 0.79 6.51 71.98 0.47 1.25 16 22 C 0.08 1.50 7.17 86.31 0.62 2.12 16 23 N -0.86 -18.16 9.57 -186.72 -1.79 -19.94 16 24 H 0.29 15.17 6.69 -92.71 -0.62 14.55 16 25 H 0.11 5.36 6.50 -2.91 -0.02 5.34 16 26 H 0.12 4.84 7.58 -2.91 -0.02 4.82 16 27 H 0.11 5.07 6.94 -2.91 -0.02 5.05 16 28 H 0.41 15.76 6.77 -92.71 -0.63 15.13 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.35 6.54 8.99 -89.70 -0.81 5.74 16 34 H 0.35 5.62 9.08 -89.69 -0.81 4.81 16 Total: -1.00 -57.62 306.15 3.73 -53.89 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: -0.91 Total: 40.44 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 2.57 Total: -22.50 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.84 Total: -85.80 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.40 Total: -6.65 kcal Atomic # 9 Polarization: -22.52 SS G_CDS: 2.26 Total: -20.26 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.06 Total: 40.88 kcal Total: -57.62 3.73 -53.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164436164.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.051 kcal (2) G-P(sol) polarization free energy of solvation -57.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds