Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86804 * 119.99809 * 2 1 4 4 H 1.48494 * 109.47011 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47023 * 120.00085 * 3 2 1 6 6 H 1.48499 * 109.46548 * 239.99955 * 3 2 1 7 7 C 1.39901 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00083 * 154.64085 * 7 2 1 9 9 C 1.41024 * 120.00405 * 334.64107 * 7 2 1 10 10 C 1.40742 * 120.28728 * 334.26525 * 9 7 2 11 11 C 1.36416 * 119.96136 * 179.71417 * 10 9 7 12 12 C 1.39049 * 120.57358 * 0.56698 * 11 10 9 13 13 Cl 1.73601 * 119.69847 * 179.73475 * 12 11 10 14 14 C 1.38317 * 120.59922 * 359.71623 * 12 11 10 15 15 C 1.38677 * 120.01326 * 359.97438 * 14 12 11 16 16 N 1.38742 * 120.28595 * 179.97438 * 15 14 12 17 17 C 1.46499 * 119.99967 * 0.03172 * 16 15 14 18 18 C 1.53006 * 109.47352 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47352 * 180.02562 * 18 17 16 20 20 C 1.36335 * 125.63516 * 269.69373 * 19 18 17 21 21 C 1.34852 * 108.21794 * 179.82924 * 20 19 18 22 22 C 1.40884 * 107.41774 * 0.42256 * 21 20 19 23 23 C 1.34850 * 107.41594 * 359.73975 * 22 21 20 24 24 H 0.96998 * 119.99625 * 174.18397 * 1 2 3 25 25 H 1.08001 * 120.02285 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.70672 * 180.28350 * 11 10 9 27 27 H 1.07995 * 119.99357 * 180.02562 * 14 12 11 28 28 H 0.97005 * 120.00160 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.47342 * 299.99618 * 17 16 15 30 30 H 1.09001 * 109.47160 * 60.00065 * 17 16 15 31 31 H 1.09005 * 109.46713 * 300.00074 * 18 17 16 32 32 H 1.09001 * 109.47136 * 59.99385 * 18 17 16 33 33 H 1.08000 * 125.88965 * 359.95959 * 20 19 18 34 34 H 1.07997 * 126.29094 * 180.15994 * 21 20 19 35 35 H 1.08001 * 126.29373 * 179.73368 * 22 21 20 36 36 H 1.08004 * 125.88923 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2780 2.7464 -0.0006 5 1 3.0968 1.6965 1.2125 6 1 3.0967 1.6964 -1.2125 7 6 2.0085 -1.2116 0.0005 8 1 3.0105 -1.2569 -0.4000 9 6 1.4054 -2.3739 0.5241 10 6 0.3951 -2.2718 1.4986 11 6 -0.1880 -3.4003 1.9963 12 6 0.2149 -4.6568 1.5578 13 17 -0.5377 -6.0780 2.2116 14 6 1.2097 -4.7846 0.6053 15 6 1.8146 -3.6536 0.0781 16 7 2.8133 -3.7752 -0.8773 17 6 3.2326 -5.1026 -1.3338 18 6 4.3388 -4.9562 -2.3807 19 7 4.7576 -6.2836 -2.8376 20 6 5.7523 -7.0360 -2.2870 21 6 5.8379 -8.1915 -2.9768 22 6 4.8669 -8.1469 -3.9966 23 6 4.2209 -6.9682 -3.8875 24 1 -0.4849 -0.8357 -0.0851 25 1 0.0786 -1.3006 1.8492 26 1 -0.9660 -3.3170 2.7407 27 1 1.5147 -5.7653 0.2715 28 1 3.2340 -2.9813 -1.2431 29 1 3.6075 -5.6767 -0.4865 30 1 2.3812 -5.6206 -1.7754 31 1 3.9634 -4.3823 -3.2280 32 1 5.1902 -4.4380 -1.9395 33 1 6.3644 -6.7558 -1.4425 34 1 6.5273 -9.0006 -2.7856 35 1 4.6751 -8.9153 -4.7308 36 1 3.4168 -6.6258 -4.5220 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164458453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = 55.777505 kcal Electronic energy + Delta-G solvation = -19705.218889 eV Core-core repulsion = 16601.243260 eV Total energy + Delta-G solvation = -3103.975629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11124 -38.45431 -35.85062 -35.33518 -33.76125 -32.69032 -29.54419 -29.05373 -28.77765 -26.77835 -24.98871 -23.27887 -21.05008 -20.46916 -20.39886 -19.93521 -18.10883 -17.41102 -16.24844 -15.62863 -15.02700 -14.73688 -14.34324 -14.02942 -13.70060 -13.51365 -13.32914 -12.83932 -12.70955 -12.52004 -12.37615 -12.11250 -12.07151 -11.69086 -11.64035 -11.31953 -11.00395 -10.59542 -10.50511 -10.31711 -9.85415 -9.66797 -9.11921 -9.05687 -8.63934 -8.16634 -7.66615 -7.36619 -6.69081 -4.41440 2.26979 2.50926 2.78877 2.85125 3.05763 3.07256 3.14927 3.27733 3.34056 3.92637 4.31383 4.43923 4.62476 4.84935 5.05920 5.19603 5.22092 5.29872 5.51933 5.61925 5.83357 5.87250 6.00232 6.18509 6.26843 6.31161 6.57341 6.74406 6.95648 6.98702 7.13667 7.23197 7.28322 7.36223 7.58296 7.67027 7.85093 7.94422 8.15971 8.52904 8.62582 8.76982 9.96042 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.004875 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.923697 B = 5742.025573 C = 7908.481856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.040 3.960 3 Si 1.063 2.937 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.066 3.934 10 C -0.196 4.196 11 C -0.103 4.103 12 C -0.119 4.119 13 Cl -0.131 7.131 14 C -0.153 4.153 15 C 0.117 3.883 16 N -0.744 5.744 17 C 0.123 3.877 18 C 0.096 3.904 19 N -0.442 5.442 20 C -0.014 4.014 21 C -0.206 4.206 22 C -0.206 4.206 23 C -0.013 4.013 24 H 0.300 0.700 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.398 0.602 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.509 -6.702 -4.779 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.182 4.182 3 Si 0.886 3.114 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.091 0.909 9 C 0.061 3.939 10 C -0.217 4.217 11 C -0.123 4.123 12 C -0.147 4.147 13 Cl -0.103 7.103 14 C -0.177 4.177 15 C 0.018 3.982 16 N -0.381 5.381 17 C -0.003 4.003 18 C -0.027 4.027 19 N -0.118 5.118 20 C -0.144 4.144 21 C -0.230 4.230 22 C -0.230 4.230 23 C -0.143 4.143 24 H 0.114 0.886 25 H 0.132 0.868 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.234 0.766 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.176 0.824 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.086 -5.007 -4.577 9.809 hybrid contribution 0.197 -1.669 -0.100 1.684 sum 7.282 -6.676 -4.676 10.930 Atomic orbital electron populations 1.70481 1.08155 1.34407 1.28683 1.26920 0.95643 1.04076 0.91559 0.83658 0.75697 0.74109 0.77889 1.19824 1.20012 1.20282 1.20182 1.02576 0.94194 1.37799 0.90943 1.17371 0.93509 0.90665 0.92383 1.20553 1.03369 0.96891 1.00887 1.20107 1.00473 0.90949 1.00809 1.19814 1.03590 0.85167 1.06117 1.98225 1.82738 1.42811 1.86495 1.19843 1.00400 0.96160 1.01323 1.17524 0.94032 0.93069 0.93581 1.43654 1.42770 1.05039 1.46595 1.21312 0.95660 0.87548 0.95800 1.21977 0.99265 0.82149 0.99292 1.44028 1.27854 1.14975 1.24923 1.21862 0.96363 0.93655 1.02506 1.20868 1.03741 0.98574 0.99842 1.20870 1.01034 0.98250 1.02878 1.21871 1.03102 0.94692 0.94670 0.88589 0.86822 0.88421 0.88210 0.76586 0.92792 0.92810 0.88790 0.88822 0.82354 0.84952 0.84946 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.88 12.32 55.55 0.68 -19.20 16 2 C 0.04 0.94 4.93 -17.32 -0.09 0.86 16 3 Si 1.06 20.09 30.00 -169.99 -5.10 14.99 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.28 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.52 -12.33 8.43 -37.90 -0.32 -12.65 16 8 H 0.07 1.62 6.75 -52.48 -0.35 1.27 16 9 C 0.07 1.59 5.31 -106.63 -0.57 1.02 16 10 C -0.20 -4.74 7.89 -39.29 -0.31 -5.05 16 11 C -0.10 -2.34 9.74 -39.94 -0.39 -2.72 16 12 C -0.12 -2.62 6.33 -39.25 -0.25 -2.87 16 13 Cl -0.13 -2.53 28.94 -51.86 -1.50 -4.03 16 14 C -0.15 -3.32 9.07 -39.39 -0.36 -3.68 16 15 C 0.12 2.58 6.68 -83.30 -0.56 2.03 16 16 N -0.74 -13.47 5.63 -58.21 -0.33 -13.79 16 17 C 0.12 1.83 5.23 -4.04 -0.02 1.81 16 18 C 0.10 1.12 6.20 -4.04 -0.03 1.09 16 19 N -0.44 -5.45 2.75 -117.12 -0.32 -5.77 16 20 C -0.01 -0.17 11.43 -16.75 -0.19 -0.36 16 21 C -0.21 -2.47 10.86 -39.78 -0.43 -2.90 16 22 C -0.21 -2.48 10.86 -39.78 -0.43 -2.92 16 23 C -0.01 -0.16 11.43 -16.75 -0.19 -0.35 16 24 H 0.30 7.76 6.70 -40.82 -0.27 7.49 16 25 H 0.11 2.83 6.50 -52.49 -0.34 2.49 16 26 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 27 H 0.10 2.03 6.72 -52.49 -0.35 1.68 16 28 H 0.40 6.94 6.70 -40.82 -0.27 6.67 16 29 H 0.05 0.85 7.94 -51.93 -0.41 0.43 16 30 H 0.05 0.85 7.94 -51.93 -0.41 0.44 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -26.22 321.20 -10.03 -36.25 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -4.18 Total: 13.41 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -4.13 Total: -26.70 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.04 Total: -38.76 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.10 Total: 14.99 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -1.50 Total: -4.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.22 -10.03 -36.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164458453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.026 kcal (2) G-P(sol) polarization free energy of solvation -26.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds