Wall clock time and date at job start Tue Mar 31 2020 06:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86804 * 119.99809 * 2 1 4 4 H 1.48494 * 109.47011 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47023 * 120.00085 * 3 2 1 6 6 H 1.48499 * 109.46548 * 239.99955 * 3 2 1 7 7 C 1.39901 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00083 * 154.64085 * 7 2 1 9 9 C 1.41024 * 120.00405 * 334.64107 * 7 2 1 10 10 C 1.40742 * 120.28728 * 334.26525 * 9 7 2 11 11 C 1.36416 * 119.96136 * 179.71417 * 10 9 7 12 12 C 1.39049 * 120.57358 * 0.56698 * 11 10 9 13 13 Cl 1.73601 * 119.69847 * 179.73475 * 12 11 10 14 14 C 1.38317 * 120.59922 * 359.71623 * 12 11 10 15 15 C 1.38677 * 120.01326 * 359.97438 * 14 12 11 16 16 N 1.38742 * 120.28595 * 179.97438 * 15 14 12 17 17 C 1.46499 * 119.99967 * 0.03172 * 16 15 14 18 18 C 1.53006 * 109.47352 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47352 * 180.02562 * 18 17 16 20 20 C 1.36335 * 125.63516 * 269.69373 * 19 18 17 21 21 C 1.34852 * 108.21794 * 179.82924 * 20 19 18 22 22 C 1.40884 * 107.41774 * 0.42256 * 21 20 19 23 23 C 1.34850 * 107.41594 * 359.73975 * 22 21 20 24 24 H 0.96998 * 119.99625 * 174.18397 * 1 2 3 25 25 H 1.08001 * 120.02285 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.70672 * 180.28350 * 11 10 9 27 27 H 1.07995 * 119.99357 * 180.02562 * 14 12 11 28 28 H 0.97005 * 120.00160 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.47342 * 299.99618 * 17 16 15 30 30 H 1.09001 * 109.47160 * 60.00065 * 17 16 15 31 31 H 1.09005 * 109.46713 * 300.00074 * 18 17 16 32 32 H 1.09001 * 109.47136 * 59.99385 * 18 17 16 33 33 H 1.08000 * 125.88965 * 359.95959 * 20 19 18 34 34 H 1.07997 * 126.29094 * 180.15994 * 21 20 19 35 35 H 1.08001 * 126.29373 * 179.73368 * 22 21 20 36 36 H 1.08004 * 125.88923 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2780 2.7464 -0.0006 5 1 3.0968 1.6965 1.2125 6 1 3.0967 1.6964 -1.2125 7 6 2.0085 -1.2116 0.0005 8 1 3.0105 -1.2569 -0.4000 9 6 1.4054 -2.3739 0.5241 10 6 0.3951 -2.2718 1.4986 11 6 -0.1880 -3.4003 1.9963 12 6 0.2149 -4.6568 1.5578 13 17 -0.5377 -6.0780 2.2116 14 6 1.2097 -4.7846 0.6053 15 6 1.8146 -3.6536 0.0781 16 7 2.8133 -3.7752 -0.8773 17 6 3.2326 -5.1026 -1.3338 18 6 4.3388 -4.9562 -2.3807 19 7 4.7576 -6.2836 -2.8376 20 6 5.7523 -7.0360 -2.2870 21 6 5.8379 -8.1915 -2.9768 22 6 4.8669 -8.1469 -3.9966 23 6 4.2209 -6.9682 -3.8875 24 1 -0.4849 -0.8357 -0.0851 25 1 0.0786 -1.3006 1.8492 26 1 -0.9660 -3.3170 2.7407 27 1 1.5147 -5.7653 0.2715 28 1 3.2340 -2.9813 -1.2431 29 1 3.6075 -5.6767 -0.4865 30 1 2.3812 -5.6206 -1.7754 31 1 3.9634 -4.3823 -3.2280 32 1 5.1902 -4.4380 -1.9395 33 1 6.3644 -6.7558 -1.4425 34 1 6.5273 -9.0006 -2.7856 35 1 4.6751 -8.9153 -4.7308 36 1 3.4168 -6.6258 -4.5220 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164458453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:12 Heat of formation + Delta-G solvation = 44.947881 kcal Electronic energy + Delta-G solvation = -19705.688496 eV Core-core repulsion = 16601.243260 eV Total energy + Delta-G solvation = -3104.445237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 12.65 seconds Orbital eigenvalues (eV) -42.01312 -40.14684 -37.38223 -36.88394 -35.46859 -33.90832 -31.22499 -30.56766 -29.66047 -28.13835 -26.74250 -24.52452 -22.74161 -22.05014 -21.36357 -20.86532 -19.80674 -18.56128 -17.68269 -17.14868 -16.39180 -16.14041 -15.71448 -15.50046 -14.97860 -14.77070 -14.66735 -14.32372 -14.18007 -13.97497 -13.83698 -13.30990 -13.02504 -12.94814 -12.82480 -12.71380 -12.58038 -12.16913 -12.02829 -11.92008 -11.53676 -11.37788 -10.81489 -10.71945 -9.56662 -9.44935 -9.19063 -9.06977 -8.35894 -6.22403 0.73514 1.00888 1.34354 1.55218 1.60933 1.64655 1.81794 1.90109 2.15544 2.36677 2.67735 2.96524 3.49976 3.70572 3.75469 4.18130 4.20227 4.27549 4.38647 4.43480 4.50175 4.69783 4.78027 4.80362 4.83485 5.00380 5.21349 5.37341 5.39832 5.42511 5.49650 5.75754 5.85919 6.06209 6.09665 6.16932 6.33266 6.42738 6.47212 6.87891 6.92217 7.09907 8.11026 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.004875 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.923697 B = 5742.025573 C = 7908.481856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.006 3.994 3 Si 1.112 2.888 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.537 4.537 8 H 0.083 0.917 9 C 0.038 3.962 10 C -0.211 4.211 11 C -0.116 4.116 12 C -0.118 4.118 13 Cl -0.106 7.106 14 C -0.165 4.165 15 C 0.123 3.877 16 N -0.738 5.738 17 C 0.129 3.871 18 C 0.106 3.894 19 N -0.448 5.448 20 C -0.025 4.025 21 C -0.219 4.219 22 C -0.219 4.219 23 C -0.028 4.028 24 H 0.284 0.716 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.402 0.598 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.176 0.824 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 -7.272 -5.398 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.211 4.211 3 Si 0.931 3.069 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.566 4.566 8 H 0.101 0.899 9 C 0.033 3.967 10 C -0.232 4.232 11 C -0.137 4.137 12 C -0.146 4.146 13 Cl -0.078 7.078 14 C -0.189 4.189 15 C 0.021 3.979 16 N -0.373 5.373 17 C 0.003 3.997 18 C -0.016 4.016 19 N -0.124 5.124 20 C -0.155 4.155 21 C -0.244 4.244 22 C -0.243 4.243 23 C -0.157 4.157 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.238 0.762 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.193 0.807 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.564 -5.616 -5.219 11.494 hybrid contribution -0.271 -1.697 0.112 1.723 sum 8.293 -7.314 -5.107 12.180 Atomic orbital electron populations 1.70593 1.09113 1.33312 1.31432 1.28223 0.95570 1.07179 0.90092 0.83037 0.74725 0.70160 0.79009 1.20497 1.19222 1.17871 1.20395 1.03074 0.94581 1.38546 0.89915 1.17667 0.94162 0.91909 0.93007 1.20513 1.04297 0.96664 1.01711 1.20225 1.01025 0.91007 1.01429 1.20003 1.03151 0.85919 1.05492 1.98227 1.82274 1.41136 1.86118 1.20024 1.00622 0.96714 1.01578 1.17678 0.94162 0.92469 0.93587 1.43717 1.41498 1.06670 1.45372 1.21349 0.96387 0.85561 0.96422 1.21874 0.98663 0.82321 0.98768 1.44102 1.28050 1.15151 1.25085 1.22263 0.96499 0.93720 1.03012 1.21195 1.04103 0.99155 0.99905 1.21193 1.01100 0.98714 1.03308 1.22243 1.03592 0.94904 0.94956 0.90375 0.88568 0.87328 0.86801 0.76165 0.93273 0.93655 0.87636 0.87289 0.80660 0.83556 0.83621 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.17 12.32 21.82 0.27 -41.90 16 2 C 0.01 0.27 4.93 85.23 0.42 0.69 16 3 Si 1.11 39.95 30.00 68.60 2.06 42.01 16 4 H -0.28 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 6 H -0.25 -8.16 7.11 99.48 0.71 -7.45 16 7 C -0.54 -25.57 8.43 23.36 0.20 -25.38 16 8 H 0.08 3.64 6.75 -2.91 -0.02 3.62 16 9 C 0.04 1.83 5.31 -21.16 -0.11 1.72 16 10 C -0.21 -10.44 7.89 22.46 0.18 -10.26 16 11 C -0.12 -5.31 9.74 22.04 0.21 -5.10 16 12 C -0.12 -5.10 6.33 22.48 0.14 -4.95 16 13 Cl -0.11 -3.93 28.94 -2.72 -0.08 -4.00 16 14 C -0.16 -7.00 9.07 22.39 0.20 -6.79 16 15 C 0.12 5.33 6.68 38.98 0.26 5.59 16 16 N -0.74 -25.71 5.63 -338.07 -1.90 -27.61 16 17 C 0.13 3.59 5.23 86.38 0.45 4.04 16 18 C 0.11 2.23 6.20 86.38 0.54 2.76 16 19 N -0.45 -10.09 2.75 -524.47 -1.44 -11.53 16 20 C -0.03 -0.56 11.43 83.22 0.95 0.39 16 21 C -0.22 -4.88 10.86 22.14 0.24 -4.64 16 22 C -0.22 -4.91 10.86 22.14 0.24 -4.67 16 23 C -0.03 -0.62 11.43 83.21 0.95 0.33 16 24 H 0.28 15.29 6.70 -92.71 -0.62 14.67 16 25 H 0.10 5.01 6.50 -2.91 -0.02 5.00 16 26 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 27 H 0.11 4.45 6.72 -2.91 -0.02 4.43 16 28 H 0.40 13.41 6.70 -92.70 -0.62 12.79 16 29 H 0.05 1.45 7.94 -2.39 -0.02 1.43 16 30 H 0.05 1.37 7.94 -2.39 -0.02 1.35 16 31 H 0.11 2.00 8.14 -2.38 -0.02 1.99 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -55.81 321.20 4.40 -51.41 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.63 Total: 37.89 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 4.87 Total: -46.26 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -3.08 Total: -81.04 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.06 Total: 42.01 kcal Atomic # 17 Polarization: -3.93 SS G_CDS: -0.08 Total: -4.00 kcal Total: -55.81 4.40 -51.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164458453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.353 kcal (2) G-P(sol) polarization free energy of solvation -55.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.65 seconds