Wall clock time and date at job start Tue Mar 31 2020 08:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47423 * 2 1 4 4 C 1.46899 * 110.99859 * 199.52404 * 3 2 1 5 5 C 1.50694 * 109.47322 * 66.04262 * 4 3 2 6 6 H 1.07994 * 120.00145 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99810 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99788 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47392 * 90.00054 * 9 7 5 11 11 H 1.48502 * 109.47155 * 209.99981 * 9 7 5 12 12 H 1.48504 * 109.47261 * 329.99859 * 9 7 5 13 13 C 1.38440 * 110.99996 * 75.56556 * 3 2 1 14 14 N 1.31951 * 120.14558 * 58.96923 * 13 3 2 15 15 C 1.32658 * 122.63915 * 180.02562 * 14 13 3 16 16 C 1.36065 * 121.98951 * 359.97438 * 15 14 13 17 17 C 1.40842 * 118.85552 * 0.02562 * 16 15 14 18 18 C 1.40284 * 122.16969 * 180.02562 * 17 16 15 19 19 Cl 1.73601 * 120.27405 * 0.02562 * 18 17 16 20 20 C 1.36387 * 119.45137 * 180.02562 * 18 17 16 21 21 C 1.39269 * 120.96038 * 359.95126 * 20 18 17 22 22 C 1.36295 * 121.05560 * 0.02562 * 21 20 18 23 23 C 1.40098 * 119.56685 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.46917 * 64.86316 * 1 2 3 25 25 H 1.09000 * 109.47146 * 184.87249 * 1 2 3 26 26 H 1.09009 * 109.46958 * 304.87141 * 1 2 3 27 27 H 1.08997 * 109.46941 * 239.99172 * 2 1 3 28 28 H 1.09009 * 109.46879 * 119.99651 * 2 1 3 29 29 H 1.09005 * 109.46755 * 186.04658 * 4 3 2 30 30 H 1.09003 * 109.47075 * 306.04134 * 4 3 2 31 31 H 0.97000 * 119.99949 * 180.02562 * 8 7 5 32 32 H 1.08000 * 119.00137 * 179.97438 * 15 14 13 33 33 H 1.07996 * 120.57769 * 179.97438 * 16 15 14 34 34 H 1.08005 * 119.52194 * 179.97438 * 20 18 17 35 35 H 1.08006 * 119.47100 * 180.02562 * 21 20 18 36 36 H 1.08000 * 120.21777 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4503 -0.4583 5 6 3.4857 1.0446 -1.9079 6 1 2.5858 0.7656 -2.4357 7 6 4.7004 1.0295 -2.5602 8 7 5.7962 1.3688 -1.9172 9 14 4.7893 0.5273 -4.3572 10 1 4.6242 1.7278 -5.2155 11 1 6.1072 -0.0997 -4.6313 12 1 3.7071 -0.4456 -4.6534 13 6 1.8814 1.9601 1.2516 14 7 2.4753 1.4195 2.2986 15 6 2.3758 1.9286 3.5196 16 6 1.6500 3.0506 3.7759 17 6 0.9849 3.6880 2.7105 18 6 0.2184 4.8482 2.8957 19 17 0.0617 5.5507 4.4755 20 6 -0.4028 5.4196 1.8244 21 6 -0.2859 4.8687 0.5506 22 6 0.4515 3.7426 0.3366 23 6 1.1037 3.1283 1.4136 24 1 -0.3633 0.4365 -0.9303 25 1 -0.3633 -1.0240 0.0873 26 1 -0.3633 0.5876 0.8432 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.7854 2.4691 -0.3473 30 1 4.0248 0.7736 0.1391 31 1 6.6507 1.3585 -2.3762 32 1 2.8864 1.4376 4.3348 33 1 1.5842 3.4451 4.7790 34 1 -0.9936 6.3126 1.9657 35 1 -0.7878 5.3413 -0.2808 36 1 0.5332 3.3271 -0.6570 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:27 Heat of formation + Delta-G solvation = 55.108891 kcal Electronic energy + Delta-G solvation = -20557.329643 eV Core-core repulsion = 17453.325021 eV Total energy + Delta-G solvation = -3104.004622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79550 -37.95838 -36.45338 -36.28806 -32.81639 -31.92382 -31.08114 -30.15326 -28.96280 -26.47273 -23.88435 -23.49767 -22.52928 -22.15443 -20.20009 -17.64060 -17.49580 -16.50186 -16.30797 -15.31421 -15.03610 -14.82179 -14.29612 -14.29312 -13.71711 -13.67859 -13.15958 -12.90930 -12.53002 -12.44148 -12.19743 -11.98816 -11.47375 -11.36097 -11.30487 -11.07829 -10.87437 -10.79617 -10.60349 -10.33672 -10.12193 -9.63092 -9.47647 -9.13441 -8.98422 -8.52592 -7.78355 -7.65986 -6.08503 -4.11456 0.46720 1.01163 1.98633 2.04572 3.15300 3.29153 3.35505 3.38244 4.19032 4.23815 4.45337 4.68148 4.75240 5.00049 5.04261 5.21807 5.27471 5.32525 5.46321 5.65998 5.76573 5.83616 5.87616 5.93568 6.08258 6.18881 6.32001 6.35192 6.50534 6.58353 6.70839 6.74518 6.82930 7.18441 7.32714 7.72134 7.87059 8.04426 8.32863 8.43007 8.94692 9.52494 11.02230 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.004445 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.478560 B = 6297.936585 C = 6452.111746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 N -0.494 5.494 4 C 0.204 3.796 5 C -0.513 4.513 6 H 0.067 0.933 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.379 3.621 14 N -0.522 5.522 15 C 0.108 3.892 16 C -0.188 4.188 17 C -0.008 4.008 18 C -0.048 4.048 19 Cl -0.071 7.071 20 C -0.079 4.079 21 C -0.140 4.140 22 C -0.036 4.036 23 C -0.089 4.089 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.028 0.972 30 H 0.011 0.989 31 H 0.263 0.737 32 H 0.149 0.851 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.593 5.576 9.146 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 N -0.218 5.218 4 C 0.081 3.919 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.197 1.197 13 C 0.137 3.863 14 N -0.234 5.234 15 C -0.037 4.037 16 C -0.208 4.208 17 C -0.014 4.014 18 C -0.074 4.074 19 Cl -0.042 7.042 20 C -0.099 4.099 21 C -0.159 4.159 22 C -0.056 4.056 23 C -0.093 4.093 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.139 5.149 8.944 15.933 hybrid contribution 0.272 0.273 -0.004 0.386 sum -11.867 5.422 8.940 15.816 Atomic orbital electron populations 1.21798 0.96406 1.00474 1.01552 1.22083 0.94086 0.88044 1.02639 1.60295 1.26799 1.19044 1.15676 1.19793 0.78925 0.97493 0.95712 1.21086 0.93567 1.45586 0.94939 0.91487 1.24977 0.95510 0.95372 0.98497 1.69968 0.98557 1.48064 1.36701 0.86467 0.77376 0.78734 0.84647 1.20594 1.21288 1.19730 1.20482 0.87045 0.89150 0.89625 1.67821 1.21216 1.34488 0.99882 1.22034 0.95049 0.92861 0.93779 1.21734 1.01449 0.98458 0.99161 1.17824 0.96351 0.93745 0.93522 1.20405 1.03544 0.96654 0.86838 1.98338 1.96852 1.83225 1.25782 1.20855 0.97906 0.99505 0.91638 1.20842 1.01445 0.97309 0.96275 1.21315 0.91542 0.93087 0.99626 1.18626 1.00696 0.97199 0.92817 0.92117 0.92942 0.94071 0.88655 0.94034 0.95382 0.97154 0.92765 0.83401 0.84644 0.85029 0.84853 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 10.07 37.16 0.37 -1.89 16 2 C 0.06 1.12 5.49 -3.82 -0.02 1.10 16 3 N -0.49 -10.44 3.61 -174.16 -0.63 -11.07 16 4 C 0.20 5.25 4.53 -4.98 -0.02 5.22 16 5 C -0.51 -13.80 8.24 -34.44 -0.28 -14.08 16 6 H 0.07 1.74 7.31 -52.49 -0.38 1.36 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.38 7.50 4.59 -155.13 -0.71 6.79 16 14 N -0.52 -10.26 9.41 -12.45 -0.12 -10.38 16 15 C 0.11 1.74 11.06 -17.98 -0.20 1.54 16 16 C -0.19 -2.79 9.51 -39.38 -0.37 -3.16 16 17 C -0.01 -0.13 5.75 -106.80 -0.61 -0.75 16 18 C -0.05 -0.65 6.32 -39.48 -0.25 -0.90 16 19 Cl -0.07 -0.83 27.64 -51.86 -1.43 -2.26 16 20 C -0.08 -0.95 9.73 -39.87 -0.39 -1.34 16 21 C -0.14 -1.74 9.95 -39.90 -0.40 -2.13 16 22 C -0.04 -0.55 9.56 -39.58 -0.38 -0.93 16 23 C -0.09 -1.56 5.75 -106.71 -0.61 -2.17 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.65 7.60 -51.92 -0.39 0.25 16 27 H 0.10 1.96 6.58 -51.93 -0.34 1.61 16 28 H 0.04 0.82 7.42 -51.92 -0.39 0.44 16 29 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 30 H 0.01 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.14 1.68 7.12 -52.49 -0.37 1.30 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.15 2.40 7.61 -52.49 -0.40 2.00 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -29.62 319.38 -9.99 -39.61 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.37 Total: -0.04 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.98 Total: -11.17 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.01 Total: -46.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.43 Total: -2.26 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.62 -9.99 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.723 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds